Wall clock time and date at job start Tue Mar 31 2020 06:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47110 * 2 1 4 4 H 1.08996 * 109.47270 * 305.00652 * 3 2 1 5 5 C 1.50698 * 109.47154 * 185.00066 * 3 2 1 6 6 H 1.07999 * 120.00159 * 240.00081 * 5 3 2 7 7 C 1.37872 * 120.00059 * 60.00865 * 5 3 2 8 8 N 1.31515 * 120.00159 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99989 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47378 * 90.00016 * 9 7 5 11 11 H 1.48504 * 109.46745 * 209.99643 * 9 7 5 12 12 H 1.48494 * 109.47294 * 329.99472 * 9 7 5 13 13 N 1.46502 * 109.46584 * 65.00395 * 3 2 1 14 14 C 1.34779 * 120.00008 * 274.99863 * 13 3 2 15 15 O 1.21550 * 119.99948 * 0.02562 * 14 13 3 16 16 C 1.47849 * 120.00150 * 179.97438 * 14 13 3 17 17 C 1.39575 * 120.14487 * 180.02562 * 16 14 13 18 18 C 1.37955 * 119.85263 * 180.30542 * 17 16 14 19 19 C 1.38362 * 120.14149 * 359.43978 * 18 17 16 20 20 C 1.50708 * 119.85228 * 180.25848 * 19 18 17 21 21 C 1.52995 * 109.46866 * 330.30389 * 20 19 18 22 22 C 1.53004 * 109.46762 * 90.29971 * 20 19 18 23 23 O 1.42898 * 109.47068 * 210.29878 * 20 19 18 24 24 C 1.38356 * 120.29585 * 0.56434 * 19 18 17 25 25 C 1.37959 * 120.14427 * 359.71588 * 24 19 18 26 26 H 1.09005 * 109.47180 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47102 * 299.99203 * 1 2 3 28 28 H 1.09000 * 109.47546 * 59.99743 * 1 2 3 29 29 H 1.09008 * 109.47300 * 240.00705 * 2 1 3 30 30 H 1.08991 * 109.47702 * 120.00879 * 2 1 3 31 31 H 0.96994 * 120.00739 * 180.02562 * 8 7 5 32 32 H 0.96996 * 120.00414 * 95.00121 * 13 3 2 33 33 H 1.08002 * 120.07104 * 0.02562 * 17 16 14 34 34 H 1.07998 * 119.92975 * 179.72529 * 18 17 16 35 35 H 1.08996 * 109.47620 * 59.99965 * 21 20 19 36 36 H 1.09006 * 109.46834 * 179.97438 * 21 20 19 37 37 H 1.09001 * 109.47146 * 299.99300 * 21 20 19 38 38 H 1.08999 * 109.46847 * 60.00165 * 22 20 19 39 39 H 1.08997 * 109.46910 * 179.97438 * 22 20 19 40 40 H 1.08995 * 109.47227 * 300.00351 * 22 20 19 41 41 H 0.96704 * 114.00126 * 60.00181 * 23 20 19 42 42 H 1.07996 * 119.93336 * 179.74170 * 24 19 18 43 43 H 1.07997 * 120.07494 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8786 -1.2280 8 7 3.4062 0.3370 -2.1730 9 14 6.0049 0.8803 -1.3812 10 1 6.5538 -0.3518 -0.7601 11 1 6.3834 0.9218 -2.8166 12 1 6.5575 2.0721 -0.6889 13 7 1.6524 2.0974 1.2519 14 6 0.4351 2.6643 1.3671 15 8 -0.3414 2.6318 0.4325 16 6 0.0437 3.3246 2.6307 17 6 -1.2164 3.9122 2.7535 18 6 -1.5729 4.5323 3.9332 19 6 -0.6888 4.5624 4.9971 20 6 -1.0873 5.2365 6.2847 21 6 -2.0674 6.3721 5.9837 22 6 -1.7565 4.2167 7.2083 23 8 0.0752 5.7674 6.9241 24 6 0.5618 3.9820 4.8819 25 6 0.9330 3.3637 3.7059 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8898 31 1 3.8292 -0.0614 -2.9497 32 1 2.2719 2.1231 1.9979 33 1 -1.9090 3.8853 1.9253 34 1 -2.5459 4.9912 4.0280 35 1 -2.9541 5.9672 5.4961 36 1 -2.3559 6.8594 6.9151 37 1 -1.5906 7.0987 5.3257 38 1 -1.0583 3.4076 7.4227 39 1 -2.0443 4.7041 8.1398 40 1 -2.6432 3.8117 6.7207 41 1 0.5510 6.4220 6.3946 42 1 1.2488 4.0125 5.7146 43 1 1.9097 2.9113 3.6171 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192600730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:29 Heat of formation + Delta-G solvation = -96.061304 kcal Electronic energy + Delta-G solvation = -23213.640347 eV Core-core repulsion = 19836.318856 eV Total energy + Delta-G solvation = -3377.321491 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.36692 -40.22452 -38.00900 -36.90878 -34.47240 -33.83980 -32.83743 -31.92140 -30.81438 -28.87539 -28.22802 -25.57375 -24.68792 -23.41156 -22.29617 -21.50835 -20.83407 -19.49939 -18.45370 -17.66965 -17.36520 -16.63890 -16.29232 -15.99097 -15.91010 -15.69307 -15.28895 -14.97472 -14.60293 -14.48350 -14.10645 -13.85069 -13.53413 -13.41246 -13.25348 -13.17872 -13.08544 -12.92378 -12.83537 -12.67511 -12.59032 -12.19402 -12.11337 -12.07012 -11.66435 -11.62222 -11.09411 -11.03466 -10.76149 -10.54247 -9.96857 -9.88518 -9.59193 -8.17462 -6.35295 -0.15947 0.39918 1.44339 1.44937 1.55456 1.95803 2.33899 2.59602 2.88998 3.12055 3.30122 3.52366 3.83622 3.93507 4.03216 4.09986 4.18482 4.40587 4.46395 4.51626 4.54352 4.71450 4.73107 4.78451 4.89634 4.92731 5.01683 5.03922 5.07049 5.21179 5.23567 5.33159 5.35061 5.40246 5.42651 5.52153 5.53955 5.58865 5.76493 5.87911 5.93063 6.14164 6.71805 6.82646 6.93362 7.30854 7.50976 8.88070 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025040 B = 0.003436 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.925617 B = 8147.830811 C = 8817.908728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.278 3.722 4 H -0.001 1.001 5 C -0.551 4.551 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.971 3.029 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.265 1.265 13 N -0.699 5.699 14 C 0.537 3.463 15 O -0.586 6.586 16 C -0.144 4.144 17 C -0.076 4.076 18 C -0.113 4.113 19 C -0.093 4.093 20 C 0.170 3.830 21 C -0.177 4.177 22 C -0.138 4.138 23 O -0.566 6.566 24 C -0.109 4.109 25 C -0.088 4.088 26 H 0.047 0.953 27 H 0.040 0.960 28 H 0.026 0.974 29 H 0.074 0.926 30 H 0.040 0.960 31 H 0.266 0.734 32 H 0.401 0.599 33 H 0.124 0.876 34 H 0.157 0.843 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.390 0.610 42 H 0.149 0.851 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.213 9.863 19.219 23.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.017 0.983 5 C -0.589 4.589 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.796 3.204 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.189 1.189 13 N -0.348 5.348 14 C 0.325 3.675 15 O -0.469 6.469 16 C -0.148 4.148 17 C -0.095 4.095 18 C -0.131 4.131 19 C -0.094 4.094 20 C 0.130 3.870 21 C -0.234 4.234 22 C -0.195 4.195 23 O -0.374 6.374 24 C -0.127 4.127 25 C -0.107 4.107 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.046 0.954 29 H 0.092 0.908 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.237 0.763 33 H 0.142 0.858 34 H 0.174 0.826 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.240 0.760 42 H 0.167 0.833 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.896 9.327 18.837 22.825 hybrid contribution 1.362 0.039 -1.083 1.740 sum -7.534 9.366 17.754 21.440 Atomic orbital electron populations 1.21679 0.97054 0.99195 1.00170 1.21790 0.93709 0.99090 1.01386 1.18412 0.93802 0.89197 0.81102 0.98292 1.21563 0.91281 1.39180 1.06838 0.91075 1.25775 1.03423 0.94283 0.94921 1.70043 1.37124 1.38200 1.09877 0.85355 0.78956 0.78902 0.77189 1.19596 1.21204 1.18903 1.46226 1.15252 1.55585 1.17697 1.18852 0.82054 0.78548 0.88005 1.90701 1.52528 1.61678 1.41949 1.20097 0.97308 1.03463 0.93890 1.21328 0.94602 0.95012 0.98607 1.21271 1.01043 0.99409 0.91384 1.20983 0.94263 0.97867 0.96275 1.20070 0.85889 0.93182 0.87901 1.22546 0.99871 0.97887 1.03111 1.21804 1.00463 0.97809 0.99446 1.86526 1.41320 1.62059 1.47484 1.21106 0.97009 0.97246 0.97302 1.21499 0.99042 0.97773 0.92409 0.93428 0.94082 0.95446 0.90751 0.94081 0.92526 0.76298 0.85821 0.82573 0.90123 0.90686 0.91664 0.92591 0.90670 0.90056 0.76043 0.83323 0.84639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.75 8.51 71.98 0.61 -5.14 16 2 C -0.12 -6.08 5.45 30.59 0.17 -5.92 16 3 C 0.28 14.56 2.24 44.25 0.10 14.66 16 4 H 0.00 -0.05 7.58 -2.39 -0.02 -0.07 16 5 C -0.55 -29.41 8.73 25.60 0.22 -29.19 16 6 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 7 C 0.02 0.88 5.29 84.65 0.45 1.32 16 8 N -0.91 -52.52 11.29 21.45 0.24 -52.28 16 9 Si 0.97 42.13 29.54 68.60 2.03 44.15 16 10 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 11 H -0.29 -12.39 7.11 99.48 0.71 -11.69 16 12 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 13 N -0.70 -30.10 4.97 -448.97 -2.23 -32.33 16 14 C 0.54 22.64 6.34 86.79 0.55 23.19 16 15 O -0.59 -29.06 13.48 -3.87 -0.05 -29.11 16 16 C -0.14 -4.67 5.87 -20.09 -0.12 -4.79 16 17 C -0.08 -2.15 9.60 22.53 0.22 -1.93 16 18 C -0.11 -2.29 9.12 22.23 0.20 -2.08 16 19 C -0.09 -1.72 4.82 -19.80 -0.10 -1.82 16 20 C 0.17 2.41 1.23 -11.54 -0.01 2.40 16 21 C -0.18 -1.87 8.11 71.98 0.58 -1.28 16 22 C -0.14 -1.87 8.83 71.98 0.64 -1.23 16 23 O -0.57 -8.41 11.95 -148.98 -1.78 -10.19 16 24 C -0.11 -2.25 9.33 22.23 0.21 -2.04 16 25 C -0.09 -2.29 9.54 22.53 0.21 -2.07 16 26 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 27 H 0.04 1.86 5.64 -2.39 -0.01 1.85 16 28 H 0.03 1.36 7.84 -2.39 -0.02 1.34 16 29 H 0.07 4.15 5.95 -2.38 -0.01 4.14 16 30 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 32 H 0.40 14.75 6.57 -92.71 -0.61 14.14 16 33 H 0.12 3.71 7.65 -2.91 -0.02 3.68 16 34 H 0.16 2.21 6.14 -2.91 -0.02 2.19 16 35 H 0.08 0.71 6.50 -2.39 -0.02 0.69 16 36 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 37 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.39 3.67 9.04 -74.05 -0.67 3.01 16 42 H 0.15 2.57 7.47 -2.91 -0.02 2.54 16 43 H 0.14 3.21 6.41 -2.91 -0.02 3.20 16 Total: -1.00 -68.43 345.40 1.89 -66.54 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: -0.25 Total: 29.14 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: 3.93 Total: -15.92 kcal Atomic # 7 Polarization: -82.62 SS G_CDS: -1.99 Total: -84.61 kcal Atomic # 8 Polarization: -37.47 SS G_CDS: -1.83 Total: -39.30 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -68.43 1.89 -66.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192600730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.522 kcal (2) G-P(sol) polarization free energy of solvation -68.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds