Wall clock time and date at job start Tue Mar 31 2020 06:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08990 * 109.47170 * 54.99895 * 3 2 1 5 5 C 1.53002 * 109.46776 * 174.99999 * 3 2 1 6 6 O 1.45199 * 109.47181 * 294.99582 * 3 2 1 7 7 C 1.34632 * 117.00300 * 149.99929 * 6 3 2 8 8 O 1.21511 * 119.99651 * 0.02562 * 7 6 3 9 9 N 1.34773 * 120.00262 * 180.02562 * 7 6 3 10 10 C 1.46502 * 119.99996 * 0.02562 * 9 7 6 11 11 C 1.50695 * 109.47323 * 90.00015 * 10 9 7 12 12 H 1.08002 * 119.99939 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00441 * 180.02562 * 11 10 9 14 14 N 1.31523 * 119.99557 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00452 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47066 * 59.99887 * 15 13 11 17 17 H 1.48500 * 109.47151 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.46760 * 299.99610 * 15 13 11 19 19 C 1.46503 * 120.00126 * 179.97438 * 9 7 6 20 20 C 1.50706 * 109.46843 * 90.00314 * 19 9 7 21 21 C 1.38233 * 119.99943 * 269.72633 * 20 19 9 22 22 C 1.38234 * 119.99992 * 179.76620 * 21 20 19 23 23 C 1.38236 * 119.99811 * 0.50940 * 22 21 20 24 24 C 1.38232 * 120.00043 * 359.74349 * 23 22 21 25 25 C 1.38233 * 120.00096 * 0.02562 * 24 23 22 26 26 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 28 28 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 30 30 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 31 31 H 1.09004 * 109.46964 * 179.97438 * 5 3 2 32 32 H 1.08994 * 109.47359 * 299.99610 * 5 3 2 33 33 H 1.09000 * 109.47312 * 60.00037 * 5 3 2 34 34 H 1.09009 * 109.46688 * 209.99648 * 10 9 7 35 35 H 1.08994 * 109.47063 * 329.99018 * 10 9 7 36 36 H 0.96997 * 119.99756 * 180.02562 * 14 13 11 37 37 H 1.08997 * 109.47264 * 210.00316 * 19 9 7 38 38 H 1.08999 * 109.47243 * 330.00960 * 19 9 7 39 39 H 1.08005 * 120.00093 * 359.97438 * 21 20 19 40 40 H 1.07999 * 120.00375 * 180.23105 * 22 21 20 41 41 H 1.08004 * 120.00013 * 179.72837 * 23 22 21 42 42 H 1.07999 * 120.00287 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.00309 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5648 1.4443 0.1257 6 8 1.6559 2.0916 -1.2407 7 6 1.4461 3.4208 -1.1958 8 8 1.5808 4.0219 -0.1484 9 7 1.0868 4.0845 -2.3124 10 6 0.9240 3.3595 -3.5750 11 6 -0.5007 2.8851 -3.7017 12 1 -1.2135 3.1015 -2.9197 13 6 -0.8941 2.1739 -4.8154 14 7 -0.0259 1.9099 -5.7675 15 14 -2.6599 1.5851 -4.9722 16 1 -3.5752 2.7544 -4.9516 17 1 -2.8250 0.8504 -6.2521 18 1 -2.9834 0.6831 -3.8378 19 6 0.8580 5.5307 -2.2633 20 6 2.1485 6.2535 -2.5521 21 6 2.9983 6.5916 -1.5156 22 6 4.1843 7.2503 -1.7810 23 6 4.5155 7.5802 -3.0819 24 6 3.6632 7.2467 -4.1179 25 6 2.4795 6.5838 -3.8530 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9282 2.4719 0.1253 32 1 3.8532 0.9570 1.0571 33 1 3.9994 0.9052 -0.7161 34 1 1.1618 4.0219 -4.4075 35 1 1.5956 2.5012 -3.5904 36 1 -0.3027 1.4098 -6.5511 37 1 0.1125 5.8061 -3.0092 38 1 0.5001 5.8085 -1.2719 39 1 2.7372 6.3381 -0.4987 40 1 4.8500 7.5111 -0.9716 41 1 5.4400 8.0987 -3.2889 42 1 3.9217 7.5049 -5.1343 43 1 1.8134 6.3237 -4.6623 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195079544.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:30 Heat of formation + Delta-G solvation = -71.252532 kcal Electronic energy + Delta-G solvation = -23978.334076 eV Core-core repulsion = 20602.088374 eV Total energy + Delta-G solvation = -3376.245702 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.92459 -38.84733 -36.76862 -34.97225 -33.54931 -32.70027 -31.13148 -30.58650 -29.65270 -27.38687 -25.80337 -23.67710 -22.99008 -22.15906 -21.60134 -20.59685 -19.52700 -17.24045 -16.82082 -16.42669 -16.02511 -15.33523 -14.92257 -14.78104 -14.64410 -14.24662 -13.85187 -13.59171 -13.35304 -13.10504 -12.86045 -12.68518 -12.30819 -12.23200 -11.99966 -11.60133 -11.46982 -11.39418 -11.19414 -11.01424 -10.88856 -10.78442 -10.73448 -10.58830 -10.34006 -10.13398 -9.90800 -9.76266 -9.64141 -8.61635 -8.53333 -8.46000 -7.80916 -6.10930 -4.16727 1.57908 1.71017 3.03918 3.27966 3.32593 3.35549 3.64482 4.10703 4.36954 4.81848 4.99827 5.15034 5.16206 5.21932 5.22896 5.27495 5.38863 5.45587 5.58045 5.65391 5.78337 5.81965 5.83712 5.90754 5.99682 6.14181 6.17684 6.19426 6.30755 6.34892 6.37063 6.40645 6.68732 6.71050 6.75119 6.77556 6.97931 7.15855 7.30357 7.32067 7.55698 7.82670 8.13987 8.31491 8.85111 9.17448 9.49544 10.96538 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010619 B = 0.006707 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.112658 B = 4173.929326 C = 6174.946063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.117 4.117 3 C 0.101 3.899 4 H 0.081 0.919 5 C -0.168 4.168 6 O -0.342 6.342 7 C 0.652 3.348 8 O -0.606 6.606 9 N -0.575 5.575 10 C 0.245 3.755 11 C -0.532 4.532 12 H 0.059 0.941 13 C 0.065 3.935 14 N -0.892 5.892 15 Si 0.895 3.105 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.276 1.276 19 C 0.173 3.827 20 C -0.099 4.099 21 C -0.097 4.097 22 C -0.131 4.131 23 C -0.125 4.125 24 C -0.127 4.127 25 C -0.098 4.098 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.036 0.964 35 H 0.043 0.957 36 H 0.264 0.736 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.126 0.874 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.419 4.128 7.418 10.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C 0.044 3.956 4 H 0.099 0.901 5 C -0.225 4.225 6 O -0.255 6.255 7 C 0.407 3.593 8 O -0.499 6.499 9 N -0.311 5.311 10 C 0.126 3.874 11 C -0.570 4.570 12 H 0.077 0.923 13 C -0.137 4.137 14 N -0.531 5.531 15 Si 0.723 3.277 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.201 1.201 19 C 0.051 3.949 20 C -0.100 4.100 21 C -0.115 4.115 22 C -0.149 4.149 23 C -0.143 4.143 24 C -0.145 4.145 25 C -0.117 4.117 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.144 0.856 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.475 4.124 7.549 10.767 hybrid contribution -0.850 -0.427 -0.222 0.977 sum 5.625 3.696 7.327 9.949 Atomic orbital electron populations 1.21767 0.95104 1.01497 1.02888 1.21623 0.97056 0.94217 1.02574 1.22561 0.94574 0.92858 0.85571 0.90109 1.22197 0.95440 1.02796 1.02095 1.86482 1.81447 1.20754 1.36830 1.18041 0.76421 0.80961 0.83922 1.90833 1.60078 1.68573 1.30395 1.47087 1.68195 1.06396 1.09422 1.19402 0.97341 0.91938 0.78719 1.21419 0.95395 1.35412 1.04816 0.92323 1.24900 0.97637 0.95673 0.95507 1.69924 1.34300 1.39912 1.08943 0.86598 0.84730 0.78994 0.77369 1.20202 1.21198 1.20136 1.20210 0.93123 0.78345 1.03269 1.20432 0.97959 0.98188 0.93447 1.21226 0.93809 0.96941 0.99564 1.21094 0.97162 1.00058 0.96577 1.21084 0.99366 1.00718 0.93114 1.21100 0.94864 0.99708 0.98871 1.21207 0.96936 0.97145 0.96399 0.92897 0.93258 0.90914 0.90755 0.90647 0.92055 0.91422 0.91830 0.94635 0.93940 0.92602 0.88898 0.89856 0.85572 0.86610 0.86680 0.86353 0.85607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.81 37.16 0.36 -2.01 16 2 C -0.12 -1.69 5.65 -26.73 -0.15 -1.84 16 3 C 0.10 1.69 2.56 -26.73 -0.07 1.62 16 4 H 0.08 1.40 7.16 -51.93 -0.37 1.03 16 5 C -0.17 -2.42 9.55 37.16 0.35 -2.07 16 6 O -0.34 -7.28 8.25 -40.30 -0.33 -7.62 16 7 C 0.65 14.41 8.37 54.05 0.45 14.87 16 8 O -0.61 -13.44 14.73 -19.28 -0.28 -13.72 16 9 N -0.57 -12.59 2.44 -182.25 -0.44 -13.03 16 10 C 0.25 6.08 5.17 -5.19 -0.03 6.06 16 11 C -0.53 -14.22 9.39 -34.44 -0.32 -14.54 16 12 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 13 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 14 N -0.89 -25.13 13.29 55.43 0.74 -24.39 16 15 Si 0.90 20.93 29.54 -169.99 -5.02 15.90 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 C 0.17 3.23 5.53 -5.19 -0.03 3.20 16 20 C -0.10 -1.70 5.46 -104.62 -0.57 -2.28 16 21 C -0.10 -1.58 9.70 -39.58 -0.38 -1.96 16 22 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 23 C -0.12 -1.66 10.05 -39.58 -0.40 -2.06 16 24 C -0.13 -1.81 10.05 -39.59 -0.40 -2.21 16 25 C -0.10 -1.59 9.70 -39.58 -0.38 -1.98 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 1.36 7.82 -51.93 -0.41 0.96 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.04 0.90 8.07 -51.92 -0.42 0.48 16 35 H 0.04 1.15 7.37 -51.93 -0.38 0.77 16 36 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 37 H 0.09 1.67 8.01 -51.93 -0.42 1.25 16 38 H 0.08 1.52 7.36 -51.93 -0.38 1.14 16 39 H 0.13 2.12 7.60 -52.48 -0.40 1.72 16 40 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 41 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 42 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 43 H 0.13 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 364.80 15.07 5.50 5.50 Total: -1.00 -29.81 364.80 -8.88 -38.69 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -6.97 Total: 4.44 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -2.06 Total: -5.76 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.29 Total: -37.43 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.62 Total: -21.34 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.81 -8.88 -38.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195079544.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.561 kcal (2) G-P(sol) polarization free energy of solvation -29.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds