Wall clock time and date at job start Tue Mar 31 2020 06:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08990 * 109.47170 * 54.99895 * 3 2 1 5 5 C 1.53002 * 109.46776 * 174.99999 * 3 2 1 6 6 O 1.45199 * 109.47181 * 294.99582 * 3 2 1 7 7 C 1.34632 * 117.00300 * 149.99929 * 6 3 2 8 8 O 1.21511 * 119.99651 * 0.02562 * 7 6 3 9 9 N 1.34773 * 120.00262 * 180.02562 * 7 6 3 10 10 C 1.46502 * 119.99996 * 0.02562 * 9 7 6 11 11 C 1.50695 * 109.47323 * 90.00015 * 10 9 7 12 12 H 1.08002 * 119.99939 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00441 * 180.02562 * 11 10 9 14 14 N 1.31523 * 119.99557 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00452 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47066 * 59.99887 * 15 13 11 17 17 H 1.48500 * 109.47151 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.46760 * 299.99610 * 15 13 11 19 19 C 1.46503 * 120.00126 * 179.97438 * 9 7 6 20 20 C 1.50706 * 109.46843 * 90.00314 * 19 9 7 21 21 C 1.38233 * 119.99943 * 269.72633 * 20 19 9 22 22 C 1.38234 * 119.99992 * 179.76620 * 21 20 19 23 23 C 1.38236 * 119.99811 * 0.50940 * 22 21 20 24 24 C 1.38232 * 120.00043 * 359.74349 * 23 22 21 25 25 C 1.38233 * 120.00096 * 0.02562 * 24 23 22 26 26 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 28 28 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 30 30 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 31 31 H 1.09004 * 109.46964 * 179.97438 * 5 3 2 32 32 H 1.08994 * 109.47359 * 299.99610 * 5 3 2 33 33 H 1.09000 * 109.47312 * 60.00037 * 5 3 2 34 34 H 1.09009 * 109.46688 * 209.99648 * 10 9 7 35 35 H 1.08994 * 109.47063 * 329.99018 * 10 9 7 36 36 H 0.96997 * 119.99756 * 180.02562 * 14 13 11 37 37 H 1.08997 * 109.47264 * 210.00316 * 19 9 7 38 38 H 1.08999 * 109.47243 * 330.00960 * 19 9 7 39 39 H 1.08005 * 120.00093 * 359.97438 * 21 20 19 40 40 H 1.07999 * 120.00375 * 180.23105 * 22 21 20 41 41 H 1.08004 * 120.00013 * 179.72837 * 23 22 21 42 42 H 1.07999 * 120.00287 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.00309 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5648 1.4443 0.1257 6 8 1.6559 2.0916 -1.2407 7 6 1.4461 3.4208 -1.1958 8 8 1.5808 4.0219 -0.1484 9 7 1.0868 4.0845 -2.3124 10 6 0.9240 3.3595 -3.5750 11 6 -0.5007 2.8851 -3.7017 12 1 -1.2135 3.1015 -2.9197 13 6 -0.8941 2.1739 -4.8154 14 7 -0.0259 1.9099 -5.7675 15 14 -2.6599 1.5851 -4.9722 16 1 -3.5752 2.7544 -4.9516 17 1 -2.8250 0.8504 -6.2521 18 1 -2.9834 0.6831 -3.8378 19 6 0.8580 5.5307 -2.2633 20 6 2.1485 6.2535 -2.5521 21 6 2.9983 6.5916 -1.5156 22 6 4.1843 7.2503 -1.7810 23 6 4.5155 7.5802 -3.0819 24 6 3.6632 7.2467 -4.1179 25 6 2.4795 6.5838 -3.8530 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9282 2.4719 0.1253 32 1 3.8532 0.9570 1.0571 33 1 3.9994 0.9052 -0.7161 34 1 1.1618 4.0219 -4.4075 35 1 1.5956 2.5012 -3.5904 36 1 -0.3027 1.4098 -6.5511 37 1 0.1125 5.8061 -3.0092 38 1 0.5001 5.8085 -1.2719 39 1 2.7372 6.3381 -0.4987 40 1 4.8500 7.5111 -0.9716 41 1 5.4400 8.0987 -3.2889 42 1 3.9217 7.5049 -5.1343 43 1 1.8134 6.3237 -4.6623 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195079544.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:29 Heat of formation + Delta-G solvation = -85.442699 kcal Electronic energy + Delta-G solvation = -23978.949408 eV Core-core repulsion = 20602.088374 eV Total energy + Delta-G solvation = -3376.861034 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.55236 -40.10978 -38.28314 -36.73107 -34.92399 -34.68343 -32.55252 -31.76293 -30.88773 -29.30685 -27.31283 -25.19986 -24.69225 -23.38060 -22.95088 -21.89199 -21.07762 -19.00626 -18.63177 -18.01291 -17.53886 -16.91771 -16.62817 -16.06125 -16.01694 -15.82193 -15.16264 -14.95002 -14.82609 -14.38532 -14.25203 -14.03727 -13.96563 -13.56728 -13.44579 -13.27940 -13.11743 -12.78206 -12.67872 -12.59567 -12.55231 -12.19175 -12.14340 -12.01809 -11.83169 -11.72103 -11.60570 -11.50855 -11.24823 -10.60103 -9.79751 -9.75644 -9.56904 -8.19875 -6.33853 0.35797 0.52419 1.40552 1.42035 1.48492 1.53660 1.92037 2.39979 2.88052 3.10582 3.23292 3.74981 3.89764 3.91961 3.97960 4.12185 4.18022 4.28950 4.31409 4.39597 4.57510 4.59967 4.65511 4.69804 4.74472 4.77305 4.85411 4.95123 5.00247 5.09988 5.13166 5.16732 5.18457 5.21190 5.39653 5.56863 5.59298 5.61413 5.64267 5.73663 5.79062 6.05723 6.13748 6.49970 6.76029 7.32709 7.48532 8.86732 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010619 B = 0.006707 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.112658 B = 4173.929326 C = 6174.946063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C 0.088 3.912 4 H 0.073 0.927 5 C -0.160 4.160 6 O -0.364 6.364 7 C 0.647 3.353 8 O -0.611 6.611 9 N -0.579 5.579 10 C 0.267 3.733 11 C -0.544 4.544 12 H 0.050 0.950 13 C 0.021 3.979 14 N -0.921 5.921 15 Si 0.958 3.042 16 H -0.268 1.268 17 H -0.279 1.279 18 H -0.274 1.274 19 C 0.173 3.827 20 C -0.118 4.118 21 C -0.111 4.111 22 C -0.129 4.129 23 C -0.117 4.117 24 C -0.128 4.128 25 C -0.115 4.115 26 H 0.074 0.926 27 H 0.056 0.944 28 H 0.027 0.973 29 H 0.067 0.933 30 H 0.118 0.882 31 H 0.042 0.958 32 H 0.105 0.895 33 H 0.063 0.937 34 H 0.026 0.974 35 H 0.014 0.986 36 H 0.268 0.732 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.114 0.886 40 H 0.143 0.857 41 H 0.152 0.848 42 H 0.144 0.856 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.326 4.114 8.054 11.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C 0.033 3.967 4 H 0.091 0.909 5 C -0.217 4.217 6 O -0.278 6.278 7 C 0.402 3.598 8 O -0.505 6.505 9 N -0.315 5.315 10 C 0.147 3.853 11 C -0.582 4.582 12 H 0.068 0.932 13 C -0.179 4.179 14 N -0.560 5.560 15 Si 0.782 3.218 16 H -0.193 1.193 17 H -0.204 1.204 18 H -0.199 1.199 19 C 0.051 3.949 20 C -0.119 4.119 21 C -0.130 4.130 22 C -0.147 4.147 23 C -0.135 4.135 24 C -0.145 4.145 25 C -0.134 4.134 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.086 0.914 30 H 0.136 0.864 31 H 0.061 0.939 32 H 0.123 0.877 33 H 0.082 0.918 34 H 0.044 0.956 35 H 0.032 0.968 36 H 0.077 0.923 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.133 0.867 40 H 0.161 0.839 41 H 0.170 0.830 42 H 0.162 0.838 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.386 4.123 8.202 11.782 hybrid contribution -1.062 -0.406 -0.374 1.197 sum 6.323 3.717 7.829 10.728 Atomic orbital electron populations 1.21741 0.95998 1.02327 1.01031 1.21687 0.96227 0.92695 1.04250 1.23012 0.96346 0.93712 0.83643 0.90868 1.22162 0.93395 1.02097 1.04071 1.86481 1.81496 1.20316 1.39515 1.18147 0.76410 0.81376 0.83841 1.90805 1.60495 1.68852 1.30359 1.47108 1.68340 1.07566 1.08522 1.18912 0.95840 0.90860 0.79734 1.21593 0.96030 1.35829 1.04796 0.93170 1.25655 1.01599 0.95569 0.95056 1.70024 1.36148 1.40410 1.09402 0.85618 0.79967 0.78690 0.77478 1.19320 1.20375 1.19938 1.20300 0.94526 0.76845 1.03188 1.20297 0.97695 0.99458 0.94428 1.21225 0.94939 0.98105 0.98709 1.21428 0.96396 0.98831 0.98066 1.21513 1.00188 0.99517 0.92257 1.21434 0.93880 0.98590 1.00627 1.21265 0.98137 0.98294 0.95699 0.90710 0.92485 0.95328 0.91387 0.86420 0.93901 0.87674 0.91794 0.95589 0.96843 0.92339 0.88976 0.89902 0.86749 0.83887 0.83000 0.83827 0.86450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.63 9.81 71.98 0.71 -3.93 16 2 C -0.11 -3.06 5.65 30.59 0.17 -2.89 16 3 C 0.09 2.95 2.56 30.60 0.08 3.03 16 4 H 0.07 2.54 7.16 -2.39 -0.02 2.52 16 5 C -0.16 -4.45 9.55 71.98 0.69 -3.76 16 6 O -0.36 -16.11 8.25 -55.42 -0.46 -16.57 16 7 C 0.65 29.78 8.37 129.79 1.09 30.87 16 8 O -0.61 -27.94 14.73 19.81 0.29 -27.65 16 9 N -0.58 -26.59 2.44 -960.91 -2.34 -28.93 16 10 C 0.27 13.90 5.17 85.63 0.44 14.35 16 11 C -0.54 -30.06 9.39 25.60 0.24 -29.82 16 12 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 13 C 0.02 1.17 5.46 84.65 0.46 1.63 16 14 N -0.92 -52.77 13.29 21.45 0.28 -52.49 16 15 Si 0.96 43.22 29.54 68.60 2.03 45.25 16 16 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 17 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 19 C 0.17 6.78 5.53 85.63 0.47 7.26 16 20 C -0.12 -4.16 5.46 -19.86 -0.11 -4.27 16 21 C -0.11 -3.63 9.70 22.27 0.22 -3.42 16 22 C -0.13 -3.41 10.05 22.27 0.22 -3.18 16 23 C -0.12 -2.78 10.05 22.27 0.22 -2.56 16 24 C -0.13 -3.40 10.05 22.27 0.22 -3.17 16 25 C -0.12 -3.78 9.70 22.27 0.22 -3.56 16 26 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.03 1.09 7.82 -2.39 -0.02 1.07 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.03 1.39 8.07 -2.38 -0.02 1.37 16 35 H 0.01 0.77 7.37 -2.39 -0.02 0.76 16 36 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 37 H 0.09 3.52 8.01 -2.39 -0.02 3.50 16 38 H 0.08 3.19 7.36 -2.39 -0.02 3.17 16 39 H 0.11 3.94 7.60 -2.91 -0.02 3.92 16 40 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 41 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 42 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 43 H 0.12 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -66.00 364.80 6.11 -59.89 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 0.97 Total: 23.94 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 5.34 Total: -3.43 kcal Atomic # 7 Polarization: -79.36 SS G_CDS: -2.06 Total: -81.42 kcal Atomic # 8 Polarization: -44.06 SS G_CDS: -0.17 Total: -44.22 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -66.00 6.11 -59.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195079544.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.557 kcal (2) G-P(sol) polarization free energy of solvation -65.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds