Wall clock time and date at job start Tue Mar 31 2020 06:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42896 * 109.47089 * 2 1 4 4 C 1.35910 * 117.00124 * 179.97438 * 3 2 1 5 5 C 1.38853 * 119.98051 * 0.02562 * 4 3 2 6 6 C 1.38248 * 120.23882 * 180.02562 * 5 4 3 7 7 C 1.38008 * 120.20213 * 359.97438 * 6 5 4 8 8 C 1.50706 * 120.01303 * 179.97438 * 7 6 5 9 9 C 1.39565 * 119.97085 * 0.02562 * 7 6 5 10 10 C 1.47856 * 120.12139 * 179.97438 * 9 7 6 11 11 O 1.21557 * 119.99750 * 354.10018 * 10 9 7 12 12 N 1.34771 * 120.00132 * 174.10215 * 10 9 7 13 13 C 1.46507 * 119.99933 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.46707 * 34.99875 * 13 12 10 15 15 C 1.50700 * 109.46762 * 154.99635 * 13 12 10 16 16 H 1.07995 * 120.00521 * 5.47579 * 15 13 12 17 17 C 1.37880 * 119.99748 * 185.18951 * 15 13 12 18 18 N 1.31519 * 119.99914 * 7.60573 * 17 15 13 19 19 Si 1.86792 * 120.00166 * 187.59492 * 17 15 13 20 20 H 1.48507 * 109.46950 * 94.95277 * 19 17 15 21 21 H 1.48496 * 109.47629 * 214.95080 * 19 17 15 22 22 H 1.48499 * 109.47357 * 334.95665 * 19 17 15 23 23 C 1.52997 * 109.47250 * 274.99971 * 13 12 10 24 24 C 1.53002 * 109.47206 * 66.46635 * 23 13 12 25 25 C 1.38452 * 119.98873 * 180.27797 * 4 3 2 26 26 H 1.08995 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46792 * 300.00059 * 1 2 3 28 28 H 1.09003 * 109.46881 * 60.00060 * 1 2 3 29 29 H 1.08996 * 109.46792 * 239.99940 * 2 1 3 30 30 H 1.09003 * 109.46881 * 119.99940 * 2 1 3 31 31 H 1.07998 * 119.88388 * 359.97438 * 5 4 3 32 32 H 1.08001 * 119.89903 * 179.97438 * 6 5 4 33 33 H 1.09003 * 109.47263 * 263.10006 * 8 7 6 34 34 H 1.09001 * 109.47260 * 23.10306 * 8 7 6 35 35 H 1.09002 * 109.46642 * 143.10123 * 8 7 6 36 36 H 0.96996 * 119.99871 * 359.97438 * 12 10 9 37 37 H 0.96994 * 119.99936 * 179.97438 * 18 17 15 38 38 H 1.08998 * 109.47268 * 186.47344 * 23 13 12 39 39 H 1.09004 * 109.46999 * 306.47148 * 23 13 12 40 40 H 1.08997 * 109.46841 * 179.97438 * 24 23 13 41 41 H 1.08998 * 109.47586 * 300.00514 * 24 23 13 42 42 H 1.09004 * 109.46722 * 60.00344 * 24 23 13 43 43 H 1.07999 * 120.10416 * 0.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3538 1.5253 0.0005 5 6 4.1993 0.4239 0.0005 6 6 5.5706 0.5989 0.0016 7 6 6.1083 1.8699 0.0022 8 6 7.6039 2.0558 0.0039 9 6 5.2665 2.9831 0.0022 10 6 5.8389 4.3463 0.0034 11 8 7.0397 4.5012 0.1126 12 7 5.0295 5.4172 -0.1165 13 6 5.5968 6.7680 -0.1148 14 1 6.5659 6.7557 -0.6136 15 6 4.6680 7.7037 -0.8447 16 1 3.7076 7.3507 -1.1903 17 6 5.0418 9.0123 -1.0661 18 7 6.2629 9.4054 -0.7761 19 14 3.8141 10.2267 -1.7782 20 1 3.1578 10.9721 -0.6741 21 1 4.5218 11.1819 -2.6681 22 1 2.7864 9.4916 -2.5585 23 6 5.7719 7.2458 1.3281 24 6 6.8362 6.3934 2.0220 25 6 3.8827 2.8049 0.0064 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.7841 -0.5731 0.0005 32 1 6.2232 -0.2617 0.0020 33 1 7.9480 2.2231 1.0246 34 1 8.0815 1.1625 -0.3987 35 1 7.8637 2.9161 -0.6128 36 1 4.0715 5.2936 -0.2040 37 1 6.5260 10.3258 -0.9322 38 1 6.0847 8.2899 1.3297 39 1 4.8254 7.1493 1.8602 40 1 6.9612 6.7341 3.0498 41 1 6.5234 5.3493 2.0205 42 1 7.7826 6.4899 1.4900 43 1 3.2262 3.6624 0.0109 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197152567.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:44 Heat of formation + Delta-G solvation = -62.194314 kcal Electronic energy + Delta-G solvation = -23394.593245 eV Core-core repulsion = 20018.740337 eV Total energy + Delta-G solvation = -3375.852908 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.40129 -39.09869 -37.25544 -35.05738 -32.85121 -32.26869 -31.53218 -31.00094 -30.25404 -27.09929 -26.14879 -24.41205 -23.14925 -22.58999 -21.45630 -20.21365 -19.35881 -18.45861 -16.70460 -16.26684 -16.17891 -15.50340 -15.38777 -15.16313 -14.64667 -14.15864 -13.92023 -13.62038 -13.50657 -13.15595 -12.88242 -12.83545 -12.66091 -12.13951 -12.00475 -11.71767 -11.65494 -11.50927 -11.43527 -11.29387 -10.97861 -10.95739 -10.75876 -10.70247 -10.29899 -10.17792 -9.64179 -9.06771 -8.94452 -8.83490 -8.47290 -8.05864 -7.76468 -6.12574 -4.18554 1.01268 1.45428 3.05868 3.26243 3.32481 3.33887 3.35988 4.07796 4.16443 4.40051 4.64590 4.66706 4.80212 4.86651 4.98506 5.16212 5.19415 5.20760 5.35736 5.51211 5.52494 5.58123 5.77163 5.81789 6.00678 6.11977 6.20311 6.31164 6.38046 6.42466 6.45536 6.62702 6.67881 6.88998 7.03768 7.19696 7.34993 7.35628 7.44277 7.63416 7.73803 7.86996 8.09993 8.67995 8.80756 9.12856 9.47598 10.95388 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015097 B = 0.004341 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.196413 B = 6448.254100 C = 7821.700511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.316 6.316 4 C 0.112 3.888 5 C -0.189 4.189 6 C -0.095 4.095 7 C -0.064 4.064 8 C -0.114 4.114 9 C -0.088 4.088 10 C 0.542 3.458 11 O -0.535 6.535 12 N -0.700 5.700 13 C 0.269 3.731 14 H 0.058 0.942 15 C -0.537 4.537 16 H 0.061 0.939 17 C 0.069 3.931 18 N -0.880 5.880 19 Si 0.898 3.102 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.273 1.273 23 C -0.120 4.120 24 C -0.139 4.139 25 C -0.116 4.116 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.099 0.901 36 H 0.388 0.612 37 H 0.264 0.736 38 H 0.082 0.918 39 H 0.033 0.967 40 H 0.022 0.978 41 H 0.042 0.958 42 H 0.051 0.949 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.798 -18.843 2.300 20.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.230 6.230 4 C 0.067 3.933 5 C -0.208 4.208 6 C -0.113 4.113 7 C -0.065 4.065 8 C -0.170 4.170 9 C -0.091 4.091 10 C 0.328 3.672 11 O -0.415 6.415 12 N -0.348 5.348 13 C 0.167 3.833 14 H 0.075 0.925 15 C -0.575 4.575 16 H 0.079 0.921 17 C -0.135 4.135 18 N -0.517 5.517 19 Si 0.725 3.275 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.159 4.159 24 C -0.196 4.196 25 C -0.136 4.136 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.117 0.883 36 H 0.221 0.779 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.052 0.948 40 H 0.042 0.958 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.975 -18.360 2.364 19.452 hybrid contribution -1.196 0.345 -0.357 1.295 sum -7.171 -18.015 2.008 19.494 Atomic orbital electron populations 1.21775 0.92806 1.02685 1.03690 1.22749 0.95850 0.82238 1.01201 1.86087 1.18933 1.28958 1.89018 1.18758 0.82272 0.93826 0.98426 1.21298 0.94342 0.97804 1.07357 1.20794 0.94111 0.96623 0.99784 1.19987 0.96921 0.91479 0.98101 1.21008 0.89688 1.02749 1.03605 1.19995 0.92260 0.94721 1.02115 1.18051 0.86924 0.84029 0.78198 1.90692 1.14297 1.86020 1.50481 1.46492 1.09830 1.07736 1.70699 1.18833 0.96001 0.75554 0.92886 0.92458 1.21211 1.03069 0.95359 1.37849 0.92078 1.24876 0.95162 0.98229 0.95200 1.69976 1.16686 1.17604 1.47436 0.86496 0.81131 0.80954 0.78918 1.20560 1.21134 1.19813 1.21856 0.96044 1.01133 0.96895 1.21847 1.00416 0.99530 0.97800 1.20615 0.94272 0.95298 1.03403 0.90525 0.91460 0.91424 0.92160 0.92189 0.85566 0.85486 0.91077 0.93230 0.88274 0.77865 0.92600 0.89986 0.94796 0.95839 0.93870 0.92974 0.84631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.28 37.16 0.38 -0.66 16 2 C 0.05 0.47 5.46 37.16 0.20 0.67 16 3 O -0.32 -3.98 10.13 -19.46 -0.20 -4.17 16 4 C 0.11 1.52 6.68 -39.27 -0.26 1.26 16 5 C -0.19 -2.23 9.03 -39.35 -0.36 -2.59 16 6 C -0.09 -1.18 9.65 -39.66 -0.38 -1.56 16 7 C -0.06 -0.97 5.91 -104.21 -0.62 -1.58 16 8 C -0.11 -1.69 8.72 36.01 0.31 -1.38 16 9 C -0.09 -1.49 5.87 -104.99 -0.62 -2.11 16 10 C 0.54 11.03 6.34 -12.33 -0.08 10.95 16 11 O -0.53 -12.03 10.48 5.32 0.06 -11.97 16 12 N -0.70 -14.82 4.98 -55.87 -0.28 -15.10 16 13 C 0.27 6.75 2.09 -69.08 -0.14 6.61 16 14 H 0.06 1.66 7.54 -51.93 -0.39 1.27 16 15 C -0.54 -14.22 8.67 -34.44 -0.30 -14.52 16 16 H 0.06 1.56 7.73 -52.49 -0.41 1.16 16 17 C 0.07 1.86 5.18 -17.82 -0.09 1.77 16 18 N -0.88 -24.84 12.06 55.43 0.67 -24.17 16 19 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 C -0.12 -2.90 5.50 -26.73 -0.15 -3.04 16 24 C -0.14 -3.07 8.55 37.16 0.32 -2.75 16 25 C -0.12 -1.78 9.46 -39.02 -0.37 -2.15 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.45 7.66 -51.93 -0.40 0.06 16 30 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 31 H 0.13 1.12 6.28 -52.49 -0.33 0.79 16 32 H 0.13 1.22 8.05 -52.49 -0.42 0.80 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.05 0.59 8.04 -51.93 -0.42 0.17 16 35 H 0.10 1.74 5.86 -51.93 -0.30 1.44 16 36 H 0.39 7.35 6.60 -40.82 -0.27 7.08 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.08 2.16 6.68 -51.93 -0.35 1.82 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.04 0.94 5.61 -51.93 -0.29 0.65 16 42 H 0.05 1.22 7.93 -51.93 -0.41 0.81 16 43 H 0.14 1.99 6.45 -52.49 -0.34 1.65 16 LS Contribution 345.15 15.07 5.20 5.20 Total: -1.00 -29.93 345.15 -8.11 -38.04 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -6.40 Total: 7.57 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -2.15 Total: -11.09 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.39 Total: -39.27 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.14 Total: -16.14 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.93 -8.11 -38.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197152567.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.154 kcal (2) G-P(sol) polarization free energy of solvation -29.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds