Wall clock time and date at job start Tue Mar 31 2020 06:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42896 * 109.47089 * 2 1 4 4 C 1.35910 * 117.00124 * 179.97438 * 3 2 1 5 5 C 1.38853 * 119.98051 * 0.02562 * 4 3 2 6 6 C 1.38248 * 120.23882 * 180.02562 * 5 4 3 7 7 C 1.38008 * 120.20213 * 359.97438 * 6 5 4 8 8 C 1.50706 * 120.01303 * 179.97438 * 7 6 5 9 9 C 1.39565 * 119.97085 * 0.02562 * 7 6 5 10 10 C 1.47856 * 120.12139 * 179.97438 * 9 7 6 11 11 O 1.21557 * 119.99750 * 354.10018 * 10 9 7 12 12 N 1.34771 * 120.00132 * 174.10215 * 10 9 7 13 13 C 1.46507 * 119.99933 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.46707 * 34.99875 * 13 12 10 15 15 C 1.50700 * 109.46762 * 154.99635 * 13 12 10 16 16 H 1.07995 * 120.00521 * 5.47579 * 15 13 12 17 17 C 1.37880 * 119.99748 * 185.18951 * 15 13 12 18 18 N 1.31519 * 119.99914 * 7.60573 * 17 15 13 19 19 Si 1.86792 * 120.00166 * 187.59492 * 17 15 13 20 20 H 1.48507 * 109.46950 * 94.95277 * 19 17 15 21 21 H 1.48496 * 109.47629 * 214.95080 * 19 17 15 22 22 H 1.48499 * 109.47357 * 334.95665 * 19 17 15 23 23 C 1.52997 * 109.47250 * 274.99971 * 13 12 10 24 24 C 1.53002 * 109.47206 * 66.46635 * 23 13 12 25 25 C 1.38452 * 119.98873 * 180.27797 * 4 3 2 26 26 H 1.08995 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46792 * 300.00059 * 1 2 3 28 28 H 1.09003 * 109.46881 * 60.00060 * 1 2 3 29 29 H 1.08996 * 109.46792 * 239.99940 * 2 1 3 30 30 H 1.09003 * 109.46881 * 119.99940 * 2 1 3 31 31 H 1.07998 * 119.88388 * 359.97438 * 5 4 3 32 32 H 1.08001 * 119.89903 * 179.97438 * 6 5 4 33 33 H 1.09003 * 109.47263 * 263.10006 * 8 7 6 34 34 H 1.09001 * 109.47260 * 23.10306 * 8 7 6 35 35 H 1.09002 * 109.46642 * 143.10123 * 8 7 6 36 36 H 0.96996 * 119.99871 * 359.97438 * 12 10 9 37 37 H 0.96994 * 119.99936 * 179.97438 * 18 17 15 38 38 H 1.08998 * 109.47268 * 186.47344 * 23 13 12 39 39 H 1.09004 * 109.46999 * 306.47148 * 23 13 12 40 40 H 1.08997 * 109.46841 * 179.97438 * 24 23 13 41 41 H 1.08998 * 109.47586 * 300.00514 * 24 23 13 42 42 H 1.09004 * 109.46722 * 60.00344 * 24 23 13 43 43 H 1.07999 * 120.10416 * 0.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3538 1.5253 0.0005 5 6 4.1993 0.4239 0.0005 6 6 5.5706 0.5989 0.0016 7 6 6.1083 1.8699 0.0022 8 6 7.6039 2.0558 0.0039 9 6 5.2665 2.9831 0.0022 10 6 5.8389 4.3463 0.0034 11 8 7.0397 4.5012 0.1126 12 7 5.0295 5.4172 -0.1165 13 6 5.5968 6.7680 -0.1148 14 1 6.5659 6.7557 -0.6136 15 6 4.6680 7.7037 -0.8447 16 1 3.7076 7.3507 -1.1903 17 6 5.0418 9.0123 -1.0661 18 7 6.2629 9.4054 -0.7761 19 14 3.8141 10.2267 -1.7782 20 1 3.1578 10.9721 -0.6741 21 1 4.5218 11.1819 -2.6681 22 1 2.7864 9.4916 -2.5585 23 6 5.7719 7.2458 1.3281 24 6 6.8362 6.3934 2.0220 25 6 3.8827 2.8049 0.0064 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.7841 -0.5731 0.0005 32 1 6.2232 -0.2617 0.0020 33 1 7.9480 2.2231 1.0246 34 1 8.0815 1.1625 -0.3987 35 1 7.8637 2.9161 -0.6128 36 1 4.0715 5.2936 -0.2040 37 1 6.5260 10.3258 -0.9322 38 1 6.0847 8.2899 1.3297 39 1 4.8254 7.1493 1.8602 40 1 6.9612 6.7341 3.0498 41 1 6.5234 5.3493 2.0205 42 1 7.7826 6.4899 1.4900 43 1 3.2262 3.6624 0.0109 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197152567.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:44 Heat of formation + Delta-G solvation = -79.919783 kcal Electronic energy + Delta-G solvation = -23395.361879 eV Core-core repulsion = 20018.740337 eV Total energy + Delta-G solvation = -3376.621542 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.57443 -40.42980 -38.44221 -36.87398 -34.50358 -33.46114 -33.10696 -31.98610 -31.58418 -28.96100 -27.37191 -25.53188 -24.86415 -23.62743 -22.77480 -21.62829 -21.10921 -19.71750 -18.36258 -17.50744 -17.08606 -17.03071 -16.80939 -16.44108 -16.28353 -15.86253 -15.10836 -14.77567 -14.63557 -14.49879 -14.41552 -13.93536 -13.70930 -13.41778 -13.37639 -13.28034 -13.02651 -13.00398 -12.76713 -12.61084 -12.52705 -12.48277 -12.17752 -12.08306 -11.87511 -11.60129 -11.50244 -11.08343 -10.56050 -10.42729 -10.06776 -9.61627 -9.05524 -8.19525 -6.33367 -0.14484 0.39126 1.43610 1.44176 1.55005 2.00026 2.19394 2.36651 2.63794 2.85358 3.12059 3.75622 3.78123 4.01414 4.11203 4.12416 4.22978 4.32640 4.41976 4.44575 4.46654 4.54147 4.71646 4.73014 4.85412 4.91201 4.94335 4.98382 5.06553 5.10168 5.21608 5.24087 5.32258 5.32723 5.42397 5.49795 5.59517 5.62349 5.73508 5.79981 5.92151 6.07766 6.45044 6.74644 6.95848 7.32125 7.53126 8.88922 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015097 B = 0.004341 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.196413 B = 6448.254100 C = 7821.700511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.043 3.957 3 O -0.333 6.333 4 C 0.111 3.889 5 C -0.172 4.172 6 C -0.084 4.084 7 C -0.078 4.078 8 C -0.109 4.109 9 C -0.111 4.111 10 C 0.538 3.462 11 O -0.564 6.564 12 N -0.702 5.702 13 C 0.278 3.722 14 H 0.007 0.993 15 C -0.552 4.552 16 H 0.068 0.932 17 C 0.019 3.981 18 N -0.914 5.914 19 Si 0.967 3.033 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.265 1.265 23 C -0.113 4.113 24 C -0.124 4.124 25 C -0.130 4.130 26 H 0.102 0.898 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.166 0.834 32 H 0.165 0.835 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.398 0.602 37 H 0.265 0.735 38 H 0.056 0.944 39 H 0.044 0.956 40 H 0.047 0.953 41 H 0.044 0.956 42 H 0.029 0.971 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.760 -21.721 2.439 23.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.031 4.031 3 O -0.248 6.248 4 C 0.066 3.934 5 C -0.191 4.191 6 C -0.102 4.102 7 C -0.079 4.079 8 C -0.165 4.165 9 C -0.114 4.114 10 C 0.327 3.673 11 O -0.445 6.445 12 N -0.350 5.350 13 C 0.175 3.825 14 H 0.025 0.975 15 C -0.590 4.590 16 H 0.086 0.914 17 C -0.181 4.181 18 N -0.552 5.552 19 Si 0.792 3.208 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.189 1.189 23 C -0.152 4.152 24 C -0.181 4.181 25 C -0.149 4.149 26 H 0.121 0.879 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.183 0.817 32 H 0.182 0.818 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.234 0.766 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.048 0.952 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.968 -21.272 2.506 22.853 hybrid contribution -0.621 1.086 -0.410 1.317 sum -8.589 -20.186 2.095 22.037 Atomic orbital electron populations 1.21819 0.91806 1.04191 1.03008 1.23131 0.96755 0.80553 1.02700 1.86087 1.18209 1.31720 1.88755 1.18811 0.83241 0.93571 0.97800 1.21723 0.93848 0.98947 1.04581 1.21153 0.94958 0.96250 0.97804 1.20163 0.96689 0.92304 0.98794 1.20890 0.90243 1.02757 1.02607 1.19690 0.93336 0.92913 1.05496 1.18639 0.86514 0.85241 0.76934 1.90680 1.15576 1.86765 1.51528 1.46277 1.10479 1.06745 1.71547 1.18410 0.93692 0.77509 0.92877 0.97470 1.21550 1.03431 0.95979 1.38035 0.91400 1.25740 0.96796 1.00037 0.95548 1.70117 1.18569 1.17993 1.48550 0.85411 0.78763 0.78391 0.78261 1.19759 1.21104 1.18879 1.21706 0.96974 0.99792 0.96721 1.21677 0.98575 0.99298 0.98578 1.20584 0.93524 0.96525 1.04313 0.87898 0.92118 0.92174 0.90598 0.90531 0.81708 0.81791 0.91833 0.89945 0.91788 0.76637 0.92560 0.92575 0.93712 0.93386 0.93702 0.95187 0.85090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 10.28 71.98 0.74 -0.91 16 2 C 0.04 0.58 5.46 71.98 0.39 0.97 16 3 O -0.33 -7.61 10.13 -92.54 -0.94 -8.55 16 4 C 0.11 2.77 6.68 22.47 0.15 2.92 16 5 C -0.17 -3.36 9.03 22.42 0.20 -3.15 16 6 C -0.08 -1.76 9.65 22.22 0.21 -1.55 16 7 C -0.08 -2.29 5.91 -19.60 -0.12 -2.40 16 8 C -0.11 -3.20 8.72 71.24 0.62 -2.58 16 9 C -0.11 -3.82 5.87 -20.10 -0.12 -3.93 16 10 C 0.54 22.95 6.34 86.79 0.55 23.50 16 11 O -0.56 -26.93 10.48 -3.89 -0.04 -26.97 16 12 N -0.70 -31.09 4.98 -448.96 -2.24 -33.32 16 13 C 0.28 14.68 2.09 44.24 0.09 14.77 16 14 H 0.01 0.46 7.54 -2.39 -0.02 0.44 16 15 C -0.55 -30.08 8.67 25.60 0.22 -29.86 16 16 H 0.07 3.51 7.73 -2.91 -0.02 3.49 16 17 C 0.02 1.06 5.18 84.65 0.44 1.50 16 18 N -0.91 -53.46 12.06 21.45 0.26 -53.21 16 19 Si 0.97 42.94 29.54 68.60 2.03 44.96 16 20 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 21 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 22 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 23 C -0.11 -5.64 5.50 30.59 0.17 -5.47 16 24 C -0.12 -5.68 8.55 71.98 0.62 -5.06 16 25 C -0.13 -3.94 9.46 22.63 0.21 -3.73 16 26 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.08 0.81 7.66 -2.39 -0.02 0.79 16 30 H 0.08 0.80 7.66 -2.39 -0.02 0.78 16 31 H 0.17 1.93 6.28 -2.91 -0.02 1.92 16 32 H 0.16 2.25 8.05 -2.91 -0.02 2.22 16 33 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.08 1.80 8.04 -2.39 -0.02 1.79 16 35 H 0.06 2.35 5.86 -2.39 -0.01 2.34 16 36 H 0.40 15.67 6.60 -92.71 -0.61 15.06 16 37 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 38 H 0.06 3.09 6.68 -2.39 -0.02 3.07 16 39 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.04 2.01 5.61 -2.39 -0.01 2.00 16 42 H 0.03 1.46 7.93 -2.39 -0.02 1.45 16 43 H 0.13 3.92 6.45 -2.91 -0.02 3.90 16 Total: -1.00 -68.32 345.15 3.86 -64.46 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: 0.40 Total: 27.59 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: 4.39 Total: -14.97 kcal Atomic # 7 Polarization: -84.55 SS G_CDS: -1.98 Total: -86.53 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -0.98 Total: -35.52 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -68.32 3.86 -64.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197152567.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.464 kcal (2) G-P(sol) polarization free energy of solvation -68.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds