Wall clock time and date at job start Tue Mar 31 2020 06:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46826 * 2 1 4 4 N 1.46901 * 109.46810 * 185.49499 * 3 2 1 5 5 C 1.46900 * 111.00391 * 300.36124 * 4 3 2 6 6 C 1.50691 * 109.47214 * 288.98966 * 5 4 3 7 7 H 1.08008 * 120.00115 * 4.84109 * 6 5 4 8 8 C 1.37878 * 120.00283 * 184.83630 * 6 5 4 9 9 N 1.31520 * 119.99786 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00321 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46937 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47159 * 120.00494 * 10 8 6 13 13 H 1.48505 * 109.46783 * 240.00366 * 10 8 6 14 14 C 1.46901 * 111.00058 * 64.31782 * 4 3 2 15 15 C 1.50703 * 109.46991 * 66.04589 * 14 4 3 16 16 C 1.38271 * 119.93957 * 270.29800 * 15 14 4 17 17 C 1.38146 * 120.05022 * 180.30364 * 16 15 14 18 18 C 1.38730 * 119.94402 * 359.41894 * 17 16 15 19 19 O 1.35930 * 120.05465 * 180.30305 * 18 17 16 20 20 C 1.34261 * 117.00139 * 68.87282 * 19 18 17 21 21 C 1.50699 * 119.99871 * 185.74784 * 20 19 18 22 22 O 1.20831 * 120.00005 * 5.75071 * 20 19 18 23 23 C 1.38728 * 119.89137 * 0.28164 * 18 17 16 24 24 C 1.38145 * 119.94108 * 359.97438 * 23 18 17 25 25 H 1.09009 * 109.46729 * 299.99600 * 1 2 3 26 26 H 1.08997 * 109.47273 * 59.99422 * 1 2 3 27 27 H 1.09001 * 109.46733 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47244 * 240.00465 * 2 1 3 29 29 H 1.08996 * 109.47708 * 119.99732 * 2 1 3 30 30 H 1.08994 * 109.47038 * 65.50264 * 3 2 1 31 31 H 1.08996 * 109.47092 * 305.49124 * 3 2 1 32 32 H 1.09009 * 109.46645 * 48.98714 * 5 4 3 33 33 H 1.08998 * 109.47428 * 168.98305 * 5 4 3 34 34 H 0.96998 * 120.00133 * 180.02562 * 9 8 6 35 35 H 1.09005 * 109.47160 * 306.04631 * 14 4 3 36 36 H 1.08998 * 109.47567 * 186.04123 * 14 4 3 37 37 H 1.07999 * 119.97628 * 0.02562 * 16 15 14 38 38 H 1.08006 * 120.02731 * 179.70308 * 17 16 15 39 39 H 1.09002 * 109.47025 * 90.00872 * 21 20 19 40 40 H 1.09003 * 109.47018 * 210.00122 * 21 20 19 41 41 H 1.08993 * 109.47214 * 330.00408 * 21 20 19 42 42 H 1.07997 * 120.02838 * 180.02562 * 23 18 17 43 43 H 1.08002 * 119.96898 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5029 1.4447 -0.1326 5 6 4.1332 0.7149 0.9756 6 6 3.9946 1.5133 2.2461 7 1 3.4220 2.4291 2.2486 8 6 4.5987 1.0748 3.4053 9 7 5.2963 -0.0401 3.4021 10 14 4.4264 2.0642 4.9804 11 1 3.5973 3.2684 4.7202 12 1 3.7733 1.2293 6.0204 13 1 5.7712 2.4811 5.4526 14 6 3.9148 0.8909 -1.4294 15 6 3.4532 1.8047 -2.5353 16 6 2.2075 1.6219 -3.1068 17 6 1.7846 2.4543 -4.1250 18 6 2.6060 3.4817 -4.5657 19 8 2.1896 4.3059 -5.5632 20 6 1.1792 5.1435 -5.2801 21 6 0.5778 5.9939 -6.3691 22 8 0.7521 5.2154 -4.1520 23 6 3.8529 3.6669 -3.9864 24 6 4.2733 2.8285 -2.9722 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.7593 1.9271 0.9351 31 1 1.5985 1.9840 -0.8367 32 1 3.6442 -0.2516 1.0987 33 1 5.1898 0.5621 0.7558 34 1 5.7210 -0.3489 4.2177 35 1 3.4681 -0.0945 -1.5620 36 1 5.0009 0.8044 -1.4592 37 1 1.5664 0.8249 -2.7600 38 1 0.8134 2.3081 -4.5744 39 1 -0.2435 5.4538 -6.8401 40 1 0.2026 6.9227 -5.9393 41 1 1.3391 6.2204 -7.1154 42 1 4.4939 4.4663 -4.3275 43 1 5.2441 2.9719 -2.5212 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203949716.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:49 Heat of formation + Delta-G solvation = -53.757976 kcal Electronic energy + Delta-G solvation = -23202.919659 eV Core-core repulsion = 19827.432578 eV Total energy + Delta-G solvation = -3375.487081 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.33975 -39.13322 -37.46934 -36.46834 -32.82813 -32.37790 -31.11933 -30.91897 -30.01220 -27.02490 -26.09161 -24.10029 -22.81183 -22.34827 -22.13704 -20.69198 -19.21522 -18.28986 -17.06429 -16.73543 -16.28032 -15.39132 -15.25498 -15.05705 -14.60522 -14.44372 -14.21836 -13.65015 -13.52251 -13.32544 -13.19883 -13.07315 -12.90773 -12.36173 -12.26888 -11.96592 -11.60367 -11.46990 -11.25903 -11.05478 -10.92679 -10.87967 -10.76663 -10.65500 -10.56523 -10.44394 -9.88588 -9.73427 -9.20463 -8.85459 -8.47619 -8.36729 -7.15088 -6.00575 -4.00783 1.14819 1.46481 1.95313 2.69117 3.32590 3.40157 3.45862 3.82906 4.45919 4.48161 4.82751 4.87949 4.92639 4.97376 5.05819 5.19687 5.29620 5.36509 5.46455 5.49441 5.52738 5.56068 5.78484 5.82697 5.86499 6.07177 6.08985 6.16967 6.28098 6.33423 6.37827 6.40652 6.48462 6.51078 6.72852 6.82086 6.95629 6.98858 7.29597 7.39888 7.69076 7.83417 8.11088 8.22907 8.56198 9.06845 9.62995 11.10108 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019899 B = 0.003553 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.756152 B = 7879.793594 C = 8085.178440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.164 4.164 3 C 0.062 3.938 4 N -0.527 5.527 5 C 0.188 3.812 6 C -0.500 4.500 7 H 0.062 0.938 8 C 0.054 3.946 9 N -0.900 5.900 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.284 1.284 14 C 0.083 3.917 15 C -0.053 4.053 16 C -0.099 4.099 17 C -0.125 4.125 18 C 0.067 3.933 19 O -0.295 6.295 20 C 0.449 3.551 21 C -0.143 4.143 22 O -0.490 6.490 23 C -0.118 4.118 24 C -0.085 4.085 25 H 0.053 0.947 26 H 0.046 0.954 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.057 0.943 32 H -0.001 1.001 33 H 0.030 0.970 34 H 0.260 0.740 35 H 0.039 0.961 36 H 0.079 0.921 37 H 0.127 0.873 38 H 0.120 0.880 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.128 0.872 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.671 5.982 -19.767 22.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.203 4.203 3 C -0.067 4.067 4 N -0.250 5.250 5 C 0.063 3.937 6 C -0.539 4.539 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.045 4.045 15 C -0.054 4.054 16 C -0.118 4.118 17 C -0.144 4.144 18 C 0.026 3.974 19 O -0.211 6.211 20 C 0.293 3.707 21 C -0.200 4.200 22 O -0.375 6.375 23 C -0.136 4.136 24 C -0.103 4.103 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.016 0.984 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.097 0.903 37 H 0.145 0.855 38 H 0.138 0.862 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.113 0.887 42 H 0.146 0.854 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.497 6.391 -19.236 21.612 hybrid contribution -0.342 -0.426 0.966 1.110 sum -7.839 5.965 -18.270 20.757 Atomic orbital electron populations 1.21669 0.96481 1.00683 1.01305 1.22192 0.95465 1.00453 1.02216 1.22124 0.88435 0.94300 1.01826 1.62406 1.06800 1.54966 1.00841 1.19836 0.94215 0.92207 0.87403 1.21181 1.31487 1.08324 0.92907 0.91938 1.24967 0.95385 0.95223 0.99058 1.69964 1.34289 1.21771 1.27998 0.86476 0.77810 0.80174 0.83191 1.19665 1.21188 1.21060 1.21135 1.00521 0.93912 0.88963 1.20109 0.93564 0.96110 0.95624 1.20958 0.95949 0.99520 0.95323 1.21124 0.99393 0.95822 0.98051 1.18452 0.94815 0.91790 0.92325 1.84605 1.49426 1.46838 1.40226 1.24273 0.77430 0.78673 0.90354 1.21611 1.02157 0.99394 0.96841 1.90769 1.58655 1.64644 1.23467 1.21012 0.95797 1.00624 0.96174 1.20959 1.00534 0.93851 0.95004 0.92741 0.93500 0.93546 0.92927 0.90600 0.90377 0.92451 0.98360 0.95161 0.93060 0.94281 0.90306 0.85527 0.86188 0.87637 0.87771 0.88654 0.85447 0.84811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.91 37.16 0.37 -1.74 16 2 C -0.16 -2.89 5.17 -26.73 -0.14 -3.03 16 3 C 0.06 1.20 4.84 -3.82 -0.02 1.19 16 4 N -0.53 -11.25 4.65 -237.51 -1.11 -12.35 16 5 C 0.19 4.78 4.55 -4.98 -0.02 4.76 16 6 C -0.50 -14.01 8.66 -34.44 -0.30 -14.31 16 7 H 0.06 1.77 7.27 -52.48 -0.38 1.39 16 8 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -26.61 13.29 55.43 0.74 -25.88 16 10 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 C 0.08 1.46 4.94 -4.97 -0.02 1.44 16 15 C -0.05 -0.85 4.90 -104.60 -0.51 -1.36 16 16 C -0.10 -1.45 7.88 -39.60 -0.31 -1.77 16 17 C -0.13 -1.77 9.32 -39.43 -0.37 -2.14 16 18 C 0.07 0.96 5.28 -39.22 -0.21 0.75 16 19 O -0.30 -3.67 10.04 -23.63 -0.24 -3.91 16 20 C 0.45 5.15 7.84 36.01 0.28 5.43 16 21 C -0.14 -0.80 10.41 36.01 0.37 -0.43 16 22 O -0.49 -7.71 16.51 -18.75 -0.31 -8.02 16 23 C -0.12 -1.64 9.99 -39.43 -0.39 -2.04 16 24 C -0.08 -1.27 9.69 -39.61 -0.38 -1.65 16 25 H 0.05 0.81 8.14 -51.92 -0.42 0.38 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.87 5.85 -51.93 -0.30 0.57 16 29 H 0.08 1.55 6.47 -51.93 -0.34 1.21 16 30 H 0.08 1.69 7.12 -51.93 -0.37 1.32 16 31 H 0.06 1.05 5.84 -51.93 -0.30 0.75 16 32 H 0.00 -0.03 5.89 -51.92 -0.31 -0.34 16 33 H 0.03 0.83 7.83 -51.93 -0.41 0.42 16 34 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 35 H 0.04 0.67 5.99 -51.93 -0.31 0.36 16 36 H 0.08 1.38 7.81 -51.93 -0.41 0.98 16 37 H 0.13 1.73 7.58 -52.49 -0.40 1.33 16 38 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 39 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 43 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 353.18 15.07 5.32 5.32 Total: -1.00 -32.49 353.18 -8.83 -41.32 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -6.46 Total: 0.13 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -1.75 Total: -13.44 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: -0.37 Total: -38.23 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -0.55 Total: -11.93 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.49 -8.83 -41.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203949716.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.437 kcal (2) G-P(sol) polarization free energy of solvation -32.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds