Wall clock time and date at job start Tue Mar 31 2020 06:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46826 * 2 1 4 4 N 1.46901 * 109.46810 * 185.49499 * 3 2 1 5 5 C 1.46900 * 111.00391 * 300.36124 * 4 3 2 6 6 C 1.50691 * 109.47214 * 288.98966 * 5 4 3 7 7 H 1.08008 * 120.00115 * 4.84109 * 6 5 4 8 8 C 1.37878 * 120.00283 * 184.83630 * 6 5 4 9 9 N 1.31520 * 119.99786 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00321 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46937 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47159 * 120.00494 * 10 8 6 13 13 H 1.48505 * 109.46783 * 240.00366 * 10 8 6 14 14 C 1.46901 * 111.00058 * 64.31782 * 4 3 2 15 15 C 1.50703 * 109.46991 * 66.04589 * 14 4 3 16 16 C 1.38271 * 119.93957 * 270.29800 * 15 14 4 17 17 C 1.38146 * 120.05022 * 180.30364 * 16 15 14 18 18 C 1.38730 * 119.94402 * 359.41894 * 17 16 15 19 19 O 1.35930 * 120.05465 * 180.30305 * 18 17 16 20 20 C 1.34261 * 117.00139 * 68.87282 * 19 18 17 21 21 C 1.50699 * 119.99871 * 185.74784 * 20 19 18 22 22 O 1.20831 * 120.00005 * 5.75071 * 20 19 18 23 23 C 1.38728 * 119.89137 * 0.28164 * 18 17 16 24 24 C 1.38145 * 119.94108 * 359.97438 * 23 18 17 25 25 H 1.09009 * 109.46729 * 299.99600 * 1 2 3 26 26 H 1.08997 * 109.47273 * 59.99422 * 1 2 3 27 27 H 1.09001 * 109.46733 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47244 * 240.00465 * 2 1 3 29 29 H 1.08996 * 109.47708 * 119.99732 * 2 1 3 30 30 H 1.08994 * 109.47038 * 65.50264 * 3 2 1 31 31 H 1.08996 * 109.47092 * 305.49124 * 3 2 1 32 32 H 1.09009 * 109.46645 * 48.98714 * 5 4 3 33 33 H 1.08998 * 109.47428 * 168.98305 * 5 4 3 34 34 H 0.96998 * 120.00133 * 180.02562 * 9 8 6 35 35 H 1.09005 * 109.47160 * 306.04631 * 14 4 3 36 36 H 1.08998 * 109.47567 * 186.04123 * 14 4 3 37 37 H 1.07999 * 119.97628 * 0.02562 * 16 15 14 38 38 H 1.08006 * 120.02731 * 179.70308 * 17 16 15 39 39 H 1.09002 * 109.47025 * 90.00872 * 21 20 19 40 40 H 1.09003 * 109.47018 * 210.00122 * 21 20 19 41 41 H 1.08993 * 109.47214 * 330.00408 * 21 20 19 42 42 H 1.07997 * 120.02838 * 180.02562 * 23 18 17 43 43 H 1.08002 * 119.96898 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5029 1.4447 -0.1326 5 6 4.1332 0.7149 0.9756 6 6 3.9946 1.5133 2.2461 7 1 3.4220 2.4291 2.2486 8 6 4.5987 1.0748 3.4053 9 7 5.2963 -0.0401 3.4021 10 14 4.4264 2.0642 4.9804 11 1 3.5973 3.2684 4.7202 12 1 3.7733 1.2293 6.0204 13 1 5.7712 2.4811 5.4526 14 6 3.9148 0.8909 -1.4294 15 6 3.4532 1.8047 -2.5353 16 6 2.2075 1.6219 -3.1068 17 6 1.7846 2.4543 -4.1250 18 6 2.6060 3.4817 -4.5657 19 8 2.1896 4.3059 -5.5632 20 6 1.1792 5.1435 -5.2801 21 6 0.5778 5.9939 -6.3691 22 8 0.7521 5.2154 -4.1520 23 6 3.8529 3.6669 -3.9864 24 6 4.2733 2.8285 -2.9722 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.7593 1.9271 0.9351 31 1 1.5985 1.9840 -0.8367 32 1 3.6442 -0.2516 1.0987 33 1 5.1898 0.5621 0.7558 34 1 5.7210 -0.3489 4.2177 35 1 3.4681 -0.0945 -1.5620 36 1 5.0009 0.8044 -1.4592 37 1 1.5664 0.8249 -2.7600 38 1 0.8134 2.3081 -4.5744 39 1 -0.2435 5.4538 -6.8401 40 1 0.2026 6.9227 -5.9393 41 1 1.3391 6.2204 -7.1154 42 1 4.4939 4.4663 -4.3275 43 1 5.2441 2.9719 -2.5212 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203949716.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:48 Heat of formation + Delta-G solvation = -72.395228 kcal Electronic energy + Delta-G solvation = -23203.727831 eV Core-core repulsion = 19827.432578 eV Total energy + Delta-G solvation = -3376.295253 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.32861 -40.38069 -38.80142 -37.67516 -34.87233 -33.78657 -32.27781 -32.03342 -30.95632 -28.88926 -27.47091 -25.69865 -24.02448 -23.77884 -23.46201 -21.83596 -20.79730 -19.28535 -18.39207 -17.97294 -17.74199 -16.92814 -16.74166 -16.39645 -16.16256 -15.63560 -15.53023 -15.21047 -14.83563 -14.42527 -14.34173 -14.20494 -13.82355 -13.56808 -13.35246 -13.19488 -13.06478 -12.93562 -12.82488 -12.65178 -12.53754 -12.41836 -12.26215 -12.25167 -11.85355 -11.69484 -11.63288 -11.36387 -11.25861 -10.58813 -9.98415 -9.62201 -8.87412 -8.18557 -6.27084 0.02514 0.34036 1.07694 1.38938 1.39984 1.53264 1.79644 2.40326 2.69281 3.13191 3.50850 3.66714 3.78094 3.85915 3.92984 4.08657 4.13357 4.30387 4.35150 4.41872 4.45990 4.56431 4.59055 4.63045 4.71259 4.75444 4.86498 4.97728 5.01945 5.04869 5.11067 5.14849 5.20453 5.23989 5.32016 5.40946 5.47235 5.50206 5.63082 5.68695 5.89012 6.08890 6.39801 6.64462 6.75738 6.87988 7.41518 8.91723 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019899 B = 0.003553 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.756152 B = 7879.793594 C = 8085.178440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.155 4.155 3 C 0.067 3.933 4 N -0.539 5.539 5 C 0.205 3.795 6 C -0.516 4.516 7 H 0.054 0.946 8 C 0.004 3.996 9 N -0.933 5.933 10 Si 0.963 3.037 11 H -0.268 1.268 12 H -0.278 1.278 13 H -0.278 1.278 14 C 0.088 3.912 15 C -0.070 4.070 16 C -0.099 4.099 17 C -0.130 4.130 18 C 0.061 3.939 19 O -0.293 6.293 20 C 0.448 3.552 21 C -0.134 4.134 22 O -0.539 6.539 23 C -0.122 4.122 24 C -0.093 4.093 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.040 0.960 30 H 0.051 0.949 31 H 0.073 0.927 32 H -0.018 1.018 33 H 0.004 0.996 34 H 0.263 0.737 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.130 0.870 40 H 0.114 0.886 41 H 0.119 0.881 42 H 0.148 0.852 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.090 7.227 -21.455 24.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.194 4.194 3 C -0.061 4.061 4 N -0.262 5.262 5 C 0.079 3.921 6 C -0.554 4.554 7 H 0.073 0.927 8 C -0.194 4.194 9 N -0.574 5.574 10 Si 0.788 3.212 11 H -0.192 1.192 12 H -0.204 1.204 13 H -0.204 1.204 14 C -0.040 4.040 15 C -0.071 4.071 16 C -0.118 4.118 17 C -0.148 4.148 18 C 0.020 3.980 19 O -0.209 6.209 20 C 0.295 3.705 21 C -0.191 4.191 22 O -0.427 6.427 23 C -0.140 4.140 24 C -0.111 4.111 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.092 0.908 32 H -0.001 1.001 33 H 0.022 0.978 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.148 0.852 40 H 0.132 0.868 41 H 0.137 0.863 42 H 0.166 0.834 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.923 7.643 -20.962 24.030 hybrid contribution 0.090 -0.773 1.361 1.568 sum -8.833 6.870 -19.601 22.570 Atomic orbital electron populations 1.21627 0.93820 1.02067 1.02016 1.22061 0.97755 0.98580 1.01038 1.22052 0.87424 0.95588 1.01019 1.62262 1.07886 1.54806 1.01275 1.19452 0.92728 0.91551 0.88347 1.21449 1.31418 1.08246 0.94332 0.92735 1.25805 0.94953 0.96223 1.02400 1.70073 1.35038 1.23200 1.29057 0.85431 0.77998 0.78742 0.79036 1.19236 1.20375 1.20352 1.21082 1.00330 0.94739 0.87808 1.19950 0.94679 0.96675 0.95786 1.21046 0.95467 0.99857 0.95396 1.21329 1.00110 0.95529 0.97845 1.18675 0.94922 0.92062 0.92312 1.84641 1.49957 1.46777 1.39478 1.25484 0.76140 0.77903 0.91018 1.21811 1.03129 0.98718 0.95397 1.90755 1.60020 1.66131 1.25818 1.21226 0.96176 1.00819 0.95753 1.21072 1.00702 0.93863 0.95473 0.93239 0.91565 0.91854 0.91732 0.94073 0.93025 0.90828 1.00083 0.97825 0.92768 0.93615 0.90853 0.84507 0.84503 0.85176 0.86792 0.86284 0.83421 0.84545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 9.91 71.98 0.71 -3.12 16 2 C -0.16 -5.48 5.17 30.60 0.16 -5.32 16 3 C 0.07 2.66 4.84 86.31 0.42 3.08 16 4 N -0.54 -23.69 4.65 -905.35 -4.21 -27.90 16 5 C 0.21 10.90 4.55 85.55 0.39 11.29 16 6 C -0.52 -29.78 8.66 25.60 0.22 -29.56 16 7 H 0.05 3.17 7.27 -2.91 -0.02 3.15 16 8 C 0.00 0.23 5.46 84.65 0.46 0.69 16 9 N -0.93 -56.38 13.29 21.45 0.28 -56.09 16 10 Si 0.96 45.35 29.54 68.60 2.03 47.37 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 14 C 0.09 3.17 4.94 85.56 0.42 3.60 16 15 C -0.07 -2.21 4.90 -19.85 -0.10 -2.31 16 16 C -0.10 -2.79 7.88 22.26 0.18 -2.62 16 17 C -0.13 -3.45 9.32 22.37 0.21 -3.24 16 18 C 0.06 1.66 5.28 22.50 0.12 1.78 16 19 O -0.29 -6.65 10.04 4.50 0.05 -6.60 16 20 C 0.45 9.30 7.84 71.24 0.56 9.85 16 21 C -0.13 -1.04 10.41 71.24 0.74 -0.30 16 22 O -0.54 -16.31 16.51 21.95 0.36 -15.95 16 23 C -0.12 -3.25 9.99 22.36 0.22 -3.03 16 24 C -0.09 -2.73 9.69 22.25 0.22 -2.52 16 25 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 26 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.06 2.10 5.85 -2.39 -0.01 2.09 16 29 H 0.04 1.73 6.47 -2.39 -0.02 1.72 16 30 H 0.05 2.29 7.12 -2.39 -0.02 2.28 16 31 H 0.07 2.67 5.84 -2.39 -0.01 2.66 16 32 H -0.02 -1.03 5.89 -2.38 -0.01 -1.04 16 33 H 0.00 0.21 7.83 -2.39 -0.02 0.19 16 34 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 35 H 0.05 1.58 5.99 -2.38 -0.01 1.56 16 36 H 0.07 2.68 7.81 -2.39 -0.02 2.66 16 37 H 0.14 3.49 7.58 -2.91 -0.02 3.47 16 38 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 39 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 43 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -71.92 353.18 4.43 -67.49 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 0.99 Total: 13.41 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: 4.93 Total: -21.72 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -3.93 Total: -83.99 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: 0.41 Total: -22.56 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -71.92 4.43 -67.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203949716.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.906 kcal (2) G-P(sol) polarization free energy of solvation -71.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds