Wall clock time and date at job start Tue Mar 31 2020 06:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47375 * 2 1 4 4 N 1.46894 * 109.47176 * 181.14581 * 3 2 1 5 5 C 1.46895 * 111.00334 * 299.46231 * 4 3 2 6 6 C 1.50699 * 109.47159 * 294.08256 * 5 4 3 7 7 H 1.08009 * 119.99850 * 355.10657 * 6 5 4 8 8 C 1.37875 * 120.00315 * 175.11352 * 6 5 4 9 9 N 1.31512 * 120.00038 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00034 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47540 * 89.99539 * 10 8 6 12 12 H 1.48501 * 109.47060 * 209.99587 * 10 8 6 13 13 H 1.48493 * 109.47334 * 329.99246 * 10 8 6 14 14 C 1.46900 * 111.00208 * 63.41693 * 4 3 2 15 15 C 1.50698 * 109.47251 * 66.04461 * 14 4 3 16 16 C 1.38371 * 119.85065 * 270.28072 * 15 14 4 17 17 C 1.37944 * 120.15397 * 180.28132 * 16 15 14 18 18 C 1.39624 * 119.84370 * 359.44020 * 17 16 15 19 19 C 1.47730 * 120.14958 * 180.30399 * 18 17 16 20 20 O 1.21467 * 119.99881 * 359.97438 * 19 18 17 21 21 O 1.34709 * 119.99929 * 179.97438 * 19 18 17 22 22 C 1.45206 * 116.99803 * 179.97438 * 21 19 18 23 23 C 1.39630 * 119.70498 * 0.27828 * 18 17 16 24 24 C 1.37944 * 119.84523 * 0.02562 * 23 18 17 25 25 H 1.08993 * 109.47180 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46582 * 300.00027 * 1 2 3 27 27 H 1.08997 * 109.47340 * 59.99265 * 1 2 3 28 28 H 1.09006 * 109.47103 * 240.00033 * 2 1 3 29 29 H 1.09000 * 109.47557 * 120.00004 * 2 1 3 30 30 H 1.08997 * 109.47154 * 61.14679 * 3 2 1 31 31 H 1.09000 * 109.46934 * 301.14584 * 3 2 1 32 32 H 1.09001 * 109.47413 * 54.07847 * 5 4 3 33 33 H 1.09004 * 109.47824 * 174.08038 * 5 4 3 34 34 H 0.97001 * 120.00516 * 180.02562 * 9 8 6 35 35 H 1.09007 * 109.47197 * 306.04750 * 14 4 3 36 36 H 1.08998 * 109.47463 * 186.04781 * 14 4 3 37 37 H 1.08001 * 119.92370 * 0.02562 * 16 15 14 38 38 H 1.07999 * 120.07917 * 179.72326 * 17 16 15 39 39 H 1.09000 * 109.46670 * 180.02562 * 22 21 19 40 40 H 1.08993 * 109.47120 * 300.00286 * 22 21 19 41 41 H 1.09000 * 109.46883 * 60.00117 * 22 21 19 42 42 H 1.08001 * 120.07976 * 180.02562 * 23 18 17 43 43 H 1.08003 * 119.92892 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5087 1.4425 -0.0277 5 6 4.0576 0.7601 1.1517 6 6 3.7197 1.5484 2.3908 7 1 3.2232 2.5037 2.3044 8 6 4.0444 1.0502 3.6347 9 7 4.6485 -0.1131 3.7400 10 14 3.6261 2.0278 5.1705 11 1 2.2717 1.6474 5.6460 12 1 4.6235 1.7343 6.2309 13 1 3.6508 3.4788 4.8558 14 6 4.0120 0.8370 -1.2679 15 6 3.6313 1.7036 -2.4405 16 6 2.4283 1.4927 -3.0910 17 6 2.0762 2.2785 -4.1687 18 6 2.9315 3.2962 -4.5954 19 6 2.5581 4.1461 -5.7446 20 8 1.5051 3.9600 -6.3208 21 8 3.3854 5.1275 -6.1534 22 6 2.9541 5.9227 -7.2893 23 6 4.1412 3.5075 -3.9308 24 6 4.4838 2.7102 -2.8585 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6936 1.9503 0.9001 31 1 1.6600 1.9622 -0.8795 32 1 3.6264 -0.2381 1.2273 33 1 5.1405 0.6816 1.0550 34 1 4.8766 -0.4638 4.6151 35 1 3.5752 -0.1540 -1.3917 36 1 5.0974 0.7518 -1.2163 37 1 1.7654 0.7083 -2.7568 38 1 1.1391 2.1099 -4.6783 39 1 3.7102 6.6749 -7.5142 40 1 2.8174 5.2751 -8.1552 41 1 2.0110 6.4148 -7.0511 42 1 4.8072 4.2933 -4.2556 43 1 5.4193 2.8721 -2.3438 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204147882.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:35 Heat of formation + Delta-G solvation = -63.340226 kcal Electronic energy + Delta-G solvation = -22980.645456 eV Core-core repulsion = 19604.742857 eV Total energy + Delta-G solvation = -3375.902599 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.64700 -39.23203 -37.19516 -36.49230 -32.86837 -32.70437 -31.28619 -30.91397 -28.32676 -27.12311 -26.28995 -24.36604 -22.59293 -22.48289 -22.14253 -20.71157 -19.25853 -18.08818 -17.19764 -16.49261 -16.30294 -15.41330 -15.26504 -15.13566 -14.68852 -14.51675 -14.10630 -13.73758 -13.59506 -13.51493 -13.31117 -13.08286 -12.43293 -12.32351 -12.29143 -11.73191 -11.61269 -11.39640 -11.13578 -11.00505 -10.98013 -10.88759 -10.83046 -10.71746 -10.62417 -10.44176 -9.96478 -9.76555 -9.25333 -8.92342 -8.77485 -8.45025 -7.22033 -6.05025 -4.05953 0.70071 1.43155 2.49296 2.54461 3.30239 3.36961 3.41261 3.80104 4.41628 4.60186 4.84004 4.87963 4.94476 4.97131 4.98250 5.14520 5.26537 5.31042 5.39704 5.43307 5.50706 5.54068 5.78769 5.82548 5.84230 6.04279 6.06426 6.09639 6.13185 6.28140 6.30670 6.38868 6.40211 6.48825 6.69453 6.74415 6.90757 6.93811 7.26215 7.38283 7.61026 7.77664 8.04327 8.14304 8.50426 9.02021 9.58383 11.05562 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022381 B = 0.003325 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.781008 B = 8419.023823 C = 8898.582863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.164 4.164 3 C 0.062 3.938 4 N -0.528 5.528 5 C 0.189 3.811 6 C -0.504 4.504 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.895 3.105 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.076 3.924 15 C -0.018 4.018 16 C -0.128 4.128 17 C -0.055 4.055 18 C -0.143 4.143 19 C 0.512 3.488 20 O -0.513 6.513 21 O -0.356 6.356 22 C 0.037 3.963 23 C -0.062 4.062 24 C -0.115 4.115 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.055 0.945 32 H 0.005 0.995 33 H 0.025 0.975 34 H 0.261 0.739 35 H 0.042 0.958 36 H 0.080 0.920 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.101 0.899 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.134 0.866 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.838 5.645 -17.755 18.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.203 4.203 3 C -0.066 4.066 4 N -0.251 5.251 5 C 0.064 3.936 6 C -0.543 4.543 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.723 3.277 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.051 4.051 15 C -0.019 4.019 16 C -0.147 4.147 17 C -0.073 4.073 18 C -0.145 4.145 19 C 0.358 3.642 20 O -0.403 6.403 21 O -0.272 6.272 22 C -0.057 4.057 23 C -0.080 4.080 24 C -0.133 4.133 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.022 0.978 33 H 0.043 0.957 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.098 0.902 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.120 0.880 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.152 0.848 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.883 5.992 -17.784 18.986 hybrid contribution -0.584 -0.322 0.760 1.011 sum -3.467 5.670 -17.023 18.275 Atomic orbital electron populations 1.21658 0.96440 1.00735 1.01294 1.22184 0.95590 1.00337 1.02184 1.22119 0.88260 0.94523 1.01721 1.62415 1.06761 1.54636 1.01250 1.19818 0.94876 0.93014 0.85892 1.21123 1.38166 1.05090 0.89910 0.91920 1.24961 0.95375 0.95069 0.99103 1.69948 1.41487 1.18305 1.24125 0.86535 0.77995 0.80492 0.82646 1.20777 1.21305 1.19767 1.21205 1.00766 0.94260 0.88918 1.20356 0.92930 0.94418 0.94173 1.21094 0.96973 1.00755 0.95829 1.21155 0.98405 0.92569 0.95203 1.18980 0.98349 0.99581 0.97559 1.21343 0.81444 0.78448 0.82944 1.90810 1.24303 1.69214 1.55942 1.86559 1.48674 1.43964 1.48010 1.23261 1.01565 0.94378 0.86482 1.21413 0.94635 0.97933 0.94028 1.21098 1.00818 0.95046 0.96370 0.93565 0.92696 0.93493 0.93105 0.90405 0.90070 0.92625 0.97772 0.95654 0.92948 0.93981 0.90171 0.85183 0.84962 0.88023 0.91929 0.91866 0.84769 0.84818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.91 37.16 0.37 -1.69 16 2 C -0.16 -2.78 5.16 -26.73 -0.14 -2.92 16 3 C 0.06 1.15 4.78 -3.83 -0.02 1.13 16 4 N -0.53 -10.61 4.69 -237.52 -1.11 -11.72 16 5 C 0.19 4.62 4.48 -4.98 -0.02 4.60 16 6 C -0.50 -13.63 8.41 -34.44 -0.29 -13.92 16 7 H 0.06 1.70 7.29 -52.48 -0.38 1.32 16 8 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -25.98 13.29 55.43 0.74 -25.24 16 10 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 13 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 14 C 0.08 1.26 4.92 -4.98 -0.02 1.24 16 15 C -0.02 -0.26 4.90 -104.53 -0.51 -0.77 16 16 C -0.13 -1.70 7.87 -39.64 -0.31 -2.02 16 17 C -0.06 -0.72 9.60 -39.17 -0.38 -1.09 16 18 C -0.14 -1.88 5.87 -104.98 -0.62 -2.50 16 19 C 0.51 6.81 7.90 34.61 0.27 7.09 16 20 O -0.51 -7.83 16.14 -19.24 -0.31 -8.14 16 21 O -0.36 -4.02 9.82 -40.52 -0.40 -4.41 16 22 C 0.04 0.29 10.56 101.05 1.07 1.36 16 23 C -0.06 -0.76 9.62 -39.17 -0.38 -1.14 16 24 C -0.11 -1.53 9.68 -39.64 -0.38 -1.91 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.80 5.70 -51.93 -0.30 0.50 16 29 H 0.08 1.58 6.35 -51.93 -0.33 1.25 16 30 H 0.08 1.67 6.93 -51.93 -0.36 1.31 16 31 H 0.06 0.93 5.90 -51.93 -0.31 0.63 16 32 H 0.00 0.12 6.04 -51.93 -0.31 -0.20 16 33 H 0.03 0.67 7.93 -51.93 -0.41 0.25 16 34 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.04 0.68 6.03 -51.92 -0.31 0.37 16 36 H 0.08 1.31 7.87 -51.93 -0.41 0.90 16 37 H 0.13 1.62 7.24 -52.49 -0.38 1.24 16 38 H 0.13 1.61 7.65 -52.49 -0.40 1.20 16 39 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.13 1.39 7.61 -52.49 -0.40 0.99 16 43 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 351.68 15.07 5.30 5.30 Total: -1.00 -30.24 351.68 -8.66 -38.90 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -6.40 Total: 0.16 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -1.46 Total: -11.09 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: -0.38 Total: -36.97 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: -0.71 Total: -12.55 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.24 -8.66 -38.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204147882.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.440 kcal (2) G-P(sol) polarization free energy of solvation -30.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds