Wall clock time and date at job start Tue Mar 31 2020 06:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47375 * 2 1 4 4 N 1.46894 * 109.47176 * 181.14581 * 3 2 1 5 5 C 1.46895 * 111.00334 * 299.46231 * 4 3 2 6 6 C 1.50699 * 109.47159 * 294.08256 * 5 4 3 7 7 H 1.08009 * 119.99850 * 355.10657 * 6 5 4 8 8 C 1.37875 * 120.00315 * 175.11352 * 6 5 4 9 9 N 1.31512 * 120.00038 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00034 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47540 * 89.99539 * 10 8 6 12 12 H 1.48501 * 109.47060 * 209.99587 * 10 8 6 13 13 H 1.48493 * 109.47334 * 329.99246 * 10 8 6 14 14 C 1.46900 * 111.00208 * 63.41693 * 4 3 2 15 15 C 1.50698 * 109.47251 * 66.04461 * 14 4 3 16 16 C 1.38371 * 119.85065 * 270.28072 * 15 14 4 17 17 C 1.37944 * 120.15397 * 180.28132 * 16 15 14 18 18 C 1.39624 * 119.84370 * 359.44020 * 17 16 15 19 19 C 1.47730 * 120.14958 * 180.30399 * 18 17 16 20 20 O 1.21467 * 119.99881 * 359.97438 * 19 18 17 21 21 O 1.34709 * 119.99929 * 179.97438 * 19 18 17 22 22 C 1.45206 * 116.99803 * 179.97438 * 21 19 18 23 23 C 1.39630 * 119.70498 * 0.27828 * 18 17 16 24 24 C 1.37944 * 119.84523 * 0.02562 * 23 18 17 25 25 H 1.08993 * 109.47180 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46582 * 300.00027 * 1 2 3 27 27 H 1.08997 * 109.47340 * 59.99265 * 1 2 3 28 28 H 1.09006 * 109.47103 * 240.00033 * 2 1 3 29 29 H 1.09000 * 109.47557 * 120.00004 * 2 1 3 30 30 H 1.08997 * 109.47154 * 61.14679 * 3 2 1 31 31 H 1.09000 * 109.46934 * 301.14584 * 3 2 1 32 32 H 1.09001 * 109.47413 * 54.07847 * 5 4 3 33 33 H 1.09004 * 109.47824 * 174.08038 * 5 4 3 34 34 H 0.97001 * 120.00516 * 180.02562 * 9 8 6 35 35 H 1.09007 * 109.47197 * 306.04750 * 14 4 3 36 36 H 1.08998 * 109.47463 * 186.04781 * 14 4 3 37 37 H 1.08001 * 119.92370 * 0.02562 * 16 15 14 38 38 H 1.07999 * 120.07917 * 179.72326 * 17 16 15 39 39 H 1.09000 * 109.46670 * 180.02562 * 22 21 19 40 40 H 1.08993 * 109.47120 * 300.00286 * 22 21 19 41 41 H 1.09000 * 109.46883 * 60.00117 * 22 21 19 42 42 H 1.08001 * 120.07976 * 180.02562 * 23 18 17 43 43 H 1.08003 * 119.92892 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5087 1.4425 -0.0277 5 6 4.0576 0.7601 1.1517 6 6 3.7197 1.5484 2.3908 7 1 3.2232 2.5037 2.3044 8 6 4.0444 1.0502 3.6347 9 7 4.6485 -0.1131 3.7400 10 14 3.6261 2.0278 5.1705 11 1 2.2717 1.6474 5.6460 12 1 4.6235 1.7343 6.2309 13 1 3.6508 3.4788 4.8558 14 6 4.0120 0.8370 -1.2679 15 6 3.6313 1.7036 -2.4405 16 6 2.4283 1.4927 -3.0910 17 6 2.0762 2.2785 -4.1687 18 6 2.9315 3.2962 -4.5954 19 6 2.5581 4.1461 -5.7446 20 8 1.5051 3.9600 -6.3208 21 8 3.3854 5.1275 -6.1534 22 6 2.9541 5.9227 -7.2893 23 6 4.1412 3.5075 -3.9308 24 6 4.4838 2.7102 -2.8585 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6936 1.9503 0.9001 31 1 1.6600 1.9622 -0.8795 32 1 3.6264 -0.2381 1.2273 33 1 5.1405 0.6816 1.0550 34 1 4.8766 -0.4638 4.6151 35 1 3.5752 -0.1540 -1.3917 36 1 5.0974 0.7518 -1.2163 37 1 1.7654 0.7083 -2.7568 38 1 1.1391 2.1099 -4.6783 39 1 3.7102 6.6749 -7.5142 40 1 2.8174 5.2751 -8.1552 41 1 2.0110 6.4148 -7.0511 42 1 4.8072 4.2933 -4.2556 43 1 5.4193 2.8721 -2.3438 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204147882.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:35 Heat of formation + Delta-G solvation = -80.124410 kcal Electronic energy + Delta-G solvation = -22981.373273 eV Core-core repulsion = 19604.742857 eV Total energy + Delta-G solvation = -3376.630416 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.63260 -40.38319 -38.58854 -37.48124 -34.86116 -33.95483 -32.65912 -31.97002 -29.52618 -28.53093 -27.56481 -25.90212 -23.90945 -23.60507 -23.55223 -21.80624 -20.75065 -19.06229 -18.36086 -18.13819 -17.38885 -16.95714 -16.65063 -16.38401 -16.14741 -15.71603 -15.37041 -15.16779 -14.79866 -14.46166 -14.39140 -14.19698 -14.16892 -13.47833 -13.26422 -13.11984 -12.95747 -12.83489 -12.66047 -12.62296 -12.43741 -12.24058 -12.21567 -11.94697 -11.82263 -11.80072 -11.58718 -11.30479 -11.21468 -10.57173 -9.93899 -9.88908 -8.86111 -8.16686 -6.25072 -0.35041 0.42000 1.41697 1.42395 1.45802 1.53874 1.68573 2.42029 2.74517 3.16399 3.50406 3.66497 3.80801 3.94454 4.00989 4.14530 4.17449 4.31016 4.32772 4.34540 4.40325 4.51759 4.63165 4.67229 4.70507 4.76807 4.82790 4.93816 5.04893 5.09966 5.13831 5.16329 5.21544 5.28115 5.35134 5.38686 5.47395 5.54593 5.64383 5.71011 5.86902 6.10861 6.37492 6.64385 6.67099 6.91382 7.44004 8.93520 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022381 B = 0.003325 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.781008 B = 8419.023823 C = 8898.582863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.156 4.156 3 C 0.067 3.933 4 N -0.536 5.536 5 C 0.205 3.795 6 C -0.516 4.516 7 H 0.058 0.942 8 C 0.005 3.995 9 N -0.933 5.933 10 Si 0.960 3.040 11 H -0.275 1.275 12 H -0.283 1.283 13 H -0.267 1.267 14 C 0.080 3.920 15 C -0.031 4.031 16 C -0.126 4.126 17 C -0.056 4.056 18 C -0.149 4.149 19 C 0.514 3.486 20 O -0.537 6.537 21 O -0.357 6.357 22 C 0.029 3.971 23 C -0.053 4.053 24 C -0.119 4.119 25 H 0.058 0.942 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.037 0.963 30 H 0.055 0.945 31 H 0.078 0.922 32 H -0.017 1.017 33 H 0.001 0.999 34 H 0.263 0.737 35 H 0.046 0.954 36 H 0.076 0.924 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.135 0.865 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.156 0.844 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.519 6.995 -19.012 20.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.195 4.195 3 C -0.061 4.061 4 N -0.259 5.259 5 C 0.079 3.921 6 C -0.554 4.554 7 H 0.076 0.924 8 C -0.193 4.193 9 N -0.574 5.574 10 Si 0.786 3.214 11 H -0.201 1.201 12 H -0.209 1.209 13 H -0.191 1.191 14 C -0.047 4.047 15 C -0.032 4.032 16 C -0.144 4.144 17 C -0.074 4.074 18 C -0.151 4.151 19 C 0.361 3.639 20 O -0.429 6.429 21 O -0.273 6.273 22 C -0.064 4.064 23 C -0.071 4.071 24 C -0.138 4.138 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.001 0.999 33 H 0.019 0.981 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.095 0.905 37 H 0.158 0.842 38 H 0.159 0.841 39 H 0.153 0.847 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.173 0.827 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.563 7.359 -19.062 20.742 hybrid contribution -0.343 -0.686 1.017 1.274 sum -3.906 6.673 -18.045 19.632 Atomic orbital electron populations 1.21623 0.94049 1.01888 1.02046 1.22058 0.97655 0.98868 1.00877 1.22072 0.87201 0.95441 1.01396 1.62268 1.07897 1.54503 1.01226 1.19436 0.93263 0.92075 0.87350 1.21412 1.37767 1.05027 0.91195 0.92411 1.25782 0.95241 0.96004 1.02249 1.70065 1.42605 1.19820 1.24884 0.85515 0.77912 0.79211 0.78806 1.20065 1.20902 1.19108 1.21165 1.00536 0.94881 0.88116 1.20180 0.94054 0.95012 0.93941 1.21141 0.96571 1.00964 0.95768 1.21266 0.98765 0.92379 0.94987 1.19161 0.98639 0.99613 0.97658 1.21354 0.81198 0.78635 0.82675 1.90799 1.25339 1.70014 1.56763 1.86545 1.48221 1.43512 1.49016 1.23600 1.02845 0.94628 0.85349 1.21571 0.94528 0.97870 0.93140 1.21215 1.00946 0.94860 0.96748 0.92259 0.93469 0.91184 0.91648 0.94411 0.92694 0.90333 0.99887 0.98131 0.92844 0.93590 0.90513 0.84244 0.84120 0.84740 0.91721 0.91916 0.82674 0.84281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.91 71.98 0.71 -3.04 16 2 C -0.16 -5.26 5.16 30.59 0.16 -5.10 16 3 C 0.07 2.46 4.78 86.30 0.41 2.87 16 4 N -0.54 -21.85 4.69 -905.39 -4.25 -26.10 16 5 C 0.20 10.41 4.48 85.56 0.38 10.80 16 6 C -0.52 -28.54 8.41 25.60 0.22 -28.33 16 7 H 0.06 3.19 7.29 -2.91 -0.02 3.17 16 8 C 0.01 0.29 5.46 84.65 0.46 0.75 16 9 N -0.93 -55.17 13.29 21.45 0.28 -54.88 16 10 Si 0.96 43.99 29.54 68.60 2.03 46.01 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 13 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 14 C 0.08 2.65 4.92 85.56 0.42 3.08 16 15 C -0.03 -0.86 4.90 -19.80 -0.10 -0.96 16 16 C -0.13 -3.12 7.87 22.23 0.18 -2.95 16 17 C -0.06 -1.34 9.60 22.53 0.22 -1.12 16 18 C -0.15 -3.63 5.87 -20.10 -0.12 -3.74 16 19 C 0.51 12.73 7.90 70.33 0.56 13.28 16 20 O -0.54 -15.61 16.14 19.94 0.32 -15.29 16 21 O -0.36 -7.23 9.82 -56.19 -0.55 -7.78 16 22 C 0.03 0.38 10.56 113.37 1.20 1.58 16 23 C -0.05 -1.19 9.62 22.54 0.22 -0.97 16 24 C -0.12 -3.00 9.68 22.23 0.22 -2.78 16 25 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 27 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.07 2.00 5.70 -2.38 -0.01 1.98 16 29 H 0.04 1.58 6.35 -2.39 -0.02 1.56 16 30 H 0.05 2.29 6.93 -2.39 -0.02 2.28 16 31 H 0.08 2.52 5.90 -2.39 -0.01 2.51 16 32 H -0.02 -0.90 6.04 -2.39 -0.01 -0.92 16 33 H 0.00 0.03 7.93 -2.38 -0.02 0.01 16 34 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 35 H 0.05 1.48 6.03 -2.38 -0.01 1.46 16 36 H 0.08 2.55 7.87 -2.39 -0.02 2.53 16 37 H 0.14 3.14 7.24 -2.91 -0.02 3.12 16 38 H 0.14 3.13 7.65 -2.91 -0.02 3.11 16 39 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.16 2.77 7.61 -2.91 -0.02 2.75 16 43 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -65.70 351.68 3.96 -61.74 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 1.00 Total: 12.93 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: 5.13 Total: -16.63 kcal Atomic # 7 Polarization: -77.02 SS G_CDS: -3.96 Total: -80.98 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.23 Total: -23.07 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -65.70 3.96 -61.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204147882.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.385 kcal (2) G-P(sol) polarization free energy of solvation -65.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds