Wall clock time and date at job start Tue Mar 31 2020 06:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47276 * 2 1 4 4 N 1.46902 * 109.47499 * 184.73339 * 3 2 1 5 5 C 1.46892 * 111.00281 * 199.79372 * 4 3 2 6 6 C 1.50701 * 109.47455 * 66.04610 * 5 4 3 7 7 H 1.08000 * 119.99377 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00099 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99964 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 119.99717 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47290 * 60.00235 * 10 8 6 12 12 H 1.48500 * 109.46893 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47178 * 299.99756 * 10 8 6 14 14 C 1.46900 * 110.99907 * 75.83680 * 4 3 2 15 15 C 1.53000 * 109.47715 * 199.86242 * 14 4 3 16 16 O 1.45200 * 109.46952 * 64.79350 * 15 14 4 17 17 C 1.34712 * 116.99824 * 184.86160 * 16 15 14 18 18 O 1.21473 * 120.00018 * 5.10615 * 17 16 15 19 19 C 1.47722 * 119.99916 * 185.10015 * 17 16 15 20 20 C 1.39630 * 120.14885 * 174.84898 * 19 17 16 21 21 C 1.37942 * 119.85125 * 179.97438 * 20 19 17 22 22 C 1.38371 * 120.14455 * 0.02562 * 21 20 19 23 23 C 1.38367 * 120.30683 * 359.97438 * 22 21 20 24 24 C 1.37945 * 120.14987 * 359.97438 * 23 22 21 25 25 H 1.09005 * 109.46670 * 304.96063 * 1 2 3 26 26 H 1.09002 * 109.47495 * 64.95697 * 1 2 3 27 27 H 1.08996 * 109.47650 * 184.96265 * 1 2 3 28 28 H 1.09004 * 109.46797 * 240.00574 * 2 1 3 29 29 H 1.08997 * 109.47264 * 120.00736 * 2 1 3 30 30 H 1.09002 * 109.47047 * 64.73882 * 3 2 1 31 31 H 1.09000 * 109.47752 * 304.73490 * 3 2 1 32 32 H 1.09007 * 109.46931 * 186.04589 * 5 4 3 33 33 H 1.08998 * 109.47297 * 306.04288 * 5 4 3 34 34 H 0.97001 * 119.99670 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.47051 * 79.85456 * 14 4 3 36 36 H 1.09002 * 109.47208 * 319.86169 * 14 4 3 37 37 H 1.09010 * 109.46430 * 304.80121 * 15 14 4 38 38 H 1.08990 * 109.47560 * 184.79963 * 15 14 4 39 39 H 1.07997 * 120.07737 * 359.70724 * 20 19 17 40 40 H 1.08000 * 119.92968 * 180.02562 * 21 20 19 41 41 H 1.08008 * 119.84538 * 179.97438 * 22 21 20 42 42 H 1.08001 * 119.92355 * 180.02562 * 23 22 21 43 43 H 1.07996 * 120.07363 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5046 1.4441 -0.1143 5 6 4.0669 2.7217 0.3430 6 6 3.8226 2.8775 1.8219 7 1 3.3020 2.1044 2.3675 8 6 4.2646 4.0064 2.4785 9 7 4.8990 4.9476 1.8141 10 14 3.9624 4.1991 4.3118 11 1 4.6140 3.0817 5.0411 12 1 4.5308 5.4908 4.7741 13 1 2.5015 4.1784 4.5775 14 6 3.9256 1.1458 -1.4897 15 6 5.3801 0.6713 -1.4864 16 8 5.4769 -0.5875 -0.7691 17 6 6.7118 -1.0939 -0.5864 18 8 7.6867 -0.4568 -0.9317 19 6 6.8803 -2.4239 0.0340 20 6 8.1495 -2.9984 0.1273 21 6 8.2999 -4.2405 0.7083 22 6 7.1965 -4.9170 1.1975 23 6 5.9359 -4.3535 1.1083 24 6 5.7713 -3.1117 0.5307 25 1 -0.3633 0.5889 0.8423 26 1 -0.3634 0.4350 -0.9310 27 1 -0.3634 -1.0237 0.0889 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.7476 1.9312 0.9294 31 1 1.6091 1.9803 -0.8445 32 1 5.1393 2.7371 0.1483 33 1 3.5886 3.5417 -0.1926 34 1 5.2103 5.7416 2.2762 35 1 3.8381 2.0450 -2.0995 36 1 3.2891 0.3633 -1.9029 37 1 6.0047 1.4180 -0.9958 38 1 5.7191 0.5316 -2.5128 39 1 9.0109 -2.4735 -0.2584 40 1 9.2811 -4.6859 0.7815 41 1 7.3197 -5.8894 1.6511 42 1 5.0789 -4.8868 1.4926 43 1 4.7868 -2.6732 0.4613 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209045403.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:46 Heat of formation + Delta-G solvation = -65.724914 kcal Electronic energy + Delta-G solvation = -23129.637394 eV Core-core repulsion = 19753.631388 eV Total energy + Delta-G solvation = -3376.006007 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.26985 -38.68640 -37.29422 -35.86798 -33.13006 -32.38013 -31.47174 -31.06251 -29.38000 -26.98837 -24.94800 -24.11643 -22.71165 -22.37851 -21.14589 -20.67920 -19.61616 -17.95102 -16.86578 -16.51781 -16.01187 -15.92574 -15.06865 -14.71465 -14.58502 -14.51460 -14.37945 -13.62236 -13.58421 -13.35955 -13.06713 -12.68750 -12.56349 -12.28956 -12.02319 -11.73532 -11.69283 -11.49634 -11.21926 -11.09940 -10.85205 -10.72225 -10.69678 -10.31012 -10.26691 -10.18249 -9.96263 -9.59664 -9.17895 -9.11957 -9.10511 -8.41899 -7.23748 -6.01287 -4.02148 0.70656 1.25850 2.72942 2.96424 3.34522 3.38693 3.41676 3.77017 4.43243 4.69857 4.79206 4.79865 4.86088 5.02271 5.28217 5.34047 5.34796 5.42146 5.44147 5.50666 5.64862 5.69570 5.71745 5.86417 5.91449 5.99257 6.10289 6.14011 6.22939 6.28024 6.29590 6.32237 6.34053 6.45205 6.73797 6.75227 6.81152 6.86665 7.27668 7.33673 7.81661 8.06031 8.10583 8.21698 8.55153 9.05051 9.61781 11.09708 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011662 B = 0.004477 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.402566 B = 6252.256331 C = 6945.280162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.063 3.937 4 N -0.531 5.531 5 C 0.190 3.810 6 C -0.506 4.506 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.897 3.103 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.052 3.948 15 C 0.078 3.922 16 O -0.329 6.329 17 C 0.504 3.496 18 O -0.513 6.513 19 C -0.117 4.117 20 C -0.059 4.059 21 C -0.136 4.136 22 C -0.091 4.091 23 C -0.135 4.135 24 C -0.057 4.057 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.017 0.983 32 H 0.030 0.970 33 H -0.009 1.009 34 H 0.262 0.738 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.136 0.864 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.130 0.870 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.215 -17.981 -5.161 18.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.066 4.066 4 N -0.256 5.256 5 C 0.065 3.935 6 C -0.544 4.544 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.725 3.275 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.077 4.077 15 C 0.004 3.996 16 O -0.245 6.245 17 C 0.349 3.651 18 O -0.403 6.403 19 C -0.118 4.118 20 C -0.077 4.077 21 C -0.154 4.154 22 C -0.109 4.109 23 C -0.153 4.153 24 C -0.076 4.076 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.035 0.965 32 H 0.048 0.952 33 H 0.008 0.992 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.154 0.846 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.148 0.852 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.314 -17.918 -4.939 18.588 hybrid contribution -0.254 1.085 0.441 1.199 sum 0.060 -16.832 -4.498 17.423 Atomic orbital electron populations 1.21744 0.96754 1.00820 1.01406 1.21523 0.94089 0.97934 1.01961 1.22025 0.88064 0.95177 1.01294 1.62073 1.08568 1.37166 1.17785 1.19792 0.94973 0.82946 0.95773 1.21094 1.36598 1.03553 0.93180 0.91863 1.24980 0.95313 0.95849 0.98425 1.69947 1.38844 1.08903 1.36125 0.86579 0.78432 0.77227 0.85291 1.20194 1.21379 1.20266 1.22126 0.93681 0.99225 0.92620 1.23212 0.99002 0.82917 0.94430 1.86564 1.29600 1.38820 1.69467 1.21137 0.81923 0.85989 0.76072 1.90810 1.40683 1.60294 1.48545 1.19250 0.95021 0.93054 1.04510 1.21298 0.96201 0.94646 0.95587 1.21093 0.99245 0.95006 1.00035 1.21417 0.92761 0.99591 0.97178 1.21189 0.97702 0.95813 1.00603 1.21606 0.99020 0.93657 0.93280 0.92761 0.93410 0.93335 0.92792 0.91582 0.89590 0.96477 0.95244 0.99172 0.92887 0.93214 0.90919 0.90232 0.91858 0.84643 0.85277 0.85623 0.85230 0.83963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 37.16 0.37 -1.55 16 2 C -0.12 -1.80 6.09 -26.73 -0.16 -1.96 16 3 C 0.06 1.18 4.79 -3.83 -0.02 1.16 16 4 N -0.53 -11.23 4.31 -236.07 -1.02 -12.24 16 5 C 0.19 4.92 4.55 -4.98 -0.02 4.90 16 6 C -0.51 -14.21 8.23 -34.44 -0.28 -14.49 16 7 H 0.06 1.76 7.31 -52.49 -0.38 1.38 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 10 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 14 C 0.05 0.92 5.20 -3.82 -0.02 0.90 16 15 C 0.08 1.39 5.76 37.16 0.21 1.61 16 16 O -0.33 -5.89 9.44 -40.53 -0.38 -6.28 16 17 C 0.50 8.89 7.88 34.61 0.27 9.16 16 18 O -0.51 -10.23 16.06 -19.25 -0.31 -10.54 16 19 C -0.12 -1.70 5.87 -104.98 -0.62 -2.31 16 20 C -0.06 -0.74 9.59 -39.17 -0.38 -1.11 16 21 C -0.14 -1.33 10.03 -39.64 -0.40 -1.73 16 22 C -0.09 -0.82 10.04 -39.48 -0.40 -1.22 16 23 C -0.14 -1.35 10.03 -39.64 -0.40 -1.75 16 24 C -0.06 -0.72 9.62 -39.17 -0.38 -1.10 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.79 6.67 -51.93 -0.35 0.44 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.09 1.82 6.58 -51.93 -0.34 1.48 16 31 H 0.02 0.31 8.00 -51.93 -0.42 -0.11 16 32 H 0.03 0.83 6.58 -51.93 -0.34 0.48 16 33 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.05 0.86 8.00 -51.93 -0.42 0.44 16 36 H 0.07 1.12 6.45 -51.93 -0.34 0.78 16 37 H 0.08 1.64 6.51 -51.92 -0.34 1.31 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.14 1.66 7.66 -52.49 -0.40 1.25 16 40 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 42 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.14 1.77 7.62 -52.49 -0.40 1.37 16 LS Contribution 359.69 15.07 5.42 5.42 Total: -1.00 -32.08 359.69 -9.54 -41.62 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -6.66 Total: -0.65 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -2.31 Total: -7.99 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: -0.28 Total: -38.44 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.69 Total: -16.82 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.08 -9.54 -41.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209045403.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.109 kcal (2) G-P(sol) polarization free energy of solvation -32.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds