Wall clock time and date at job start Tue Mar 31 2020 06:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47276 * 2 1 4 4 N 1.46902 * 109.47499 * 184.73339 * 3 2 1 5 5 C 1.46892 * 111.00281 * 199.79372 * 4 3 2 6 6 C 1.50701 * 109.47455 * 66.04610 * 5 4 3 7 7 H 1.08000 * 119.99377 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00099 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99964 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 119.99717 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47290 * 60.00235 * 10 8 6 12 12 H 1.48500 * 109.46893 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47178 * 299.99756 * 10 8 6 14 14 C 1.46900 * 110.99907 * 75.83680 * 4 3 2 15 15 C 1.53000 * 109.47715 * 199.86242 * 14 4 3 16 16 O 1.45200 * 109.46952 * 64.79350 * 15 14 4 17 17 C 1.34712 * 116.99824 * 184.86160 * 16 15 14 18 18 O 1.21473 * 120.00018 * 5.10615 * 17 16 15 19 19 C 1.47722 * 119.99916 * 185.10015 * 17 16 15 20 20 C 1.39630 * 120.14885 * 174.84898 * 19 17 16 21 21 C 1.37942 * 119.85125 * 179.97438 * 20 19 17 22 22 C 1.38371 * 120.14455 * 0.02562 * 21 20 19 23 23 C 1.38367 * 120.30683 * 359.97438 * 22 21 20 24 24 C 1.37945 * 120.14987 * 359.97438 * 23 22 21 25 25 H 1.09005 * 109.46670 * 304.96063 * 1 2 3 26 26 H 1.09002 * 109.47495 * 64.95697 * 1 2 3 27 27 H 1.08996 * 109.47650 * 184.96265 * 1 2 3 28 28 H 1.09004 * 109.46797 * 240.00574 * 2 1 3 29 29 H 1.08997 * 109.47264 * 120.00736 * 2 1 3 30 30 H 1.09002 * 109.47047 * 64.73882 * 3 2 1 31 31 H 1.09000 * 109.47752 * 304.73490 * 3 2 1 32 32 H 1.09007 * 109.46931 * 186.04589 * 5 4 3 33 33 H 1.08998 * 109.47297 * 306.04288 * 5 4 3 34 34 H 0.97001 * 119.99670 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.47051 * 79.85456 * 14 4 3 36 36 H 1.09002 * 109.47208 * 319.86169 * 14 4 3 37 37 H 1.09010 * 109.46430 * 304.80121 * 15 14 4 38 38 H 1.08990 * 109.47560 * 184.79963 * 15 14 4 39 39 H 1.07997 * 120.07737 * 359.70724 * 20 19 17 40 40 H 1.08000 * 119.92968 * 180.02562 * 21 20 19 41 41 H 1.08008 * 119.84538 * 179.97438 * 22 21 20 42 42 H 1.08001 * 119.92355 * 180.02562 * 23 22 21 43 43 H 1.07996 * 120.07363 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5046 1.4441 -0.1143 5 6 4.0669 2.7217 0.3430 6 6 3.8226 2.8775 1.8219 7 1 3.3020 2.1044 2.3675 8 6 4.2646 4.0064 2.4785 9 7 4.8990 4.9476 1.8141 10 14 3.9624 4.1991 4.3118 11 1 4.6140 3.0817 5.0411 12 1 4.5308 5.4908 4.7741 13 1 2.5015 4.1784 4.5775 14 6 3.9256 1.1458 -1.4897 15 6 5.3801 0.6713 -1.4864 16 8 5.4769 -0.5875 -0.7691 17 6 6.7118 -1.0939 -0.5864 18 8 7.6867 -0.4568 -0.9317 19 6 6.8803 -2.4239 0.0340 20 6 8.1495 -2.9984 0.1273 21 6 8.2999 -4.2405 0.7083 22 6 7.1965 -4.9170 1.1975 23 6 5.9359 -4.3535 1.1083 24 6 5.7713 -3.1117 0.5307 25 1 -0.3633 0.5889 0.8423 26 1 -0.3634 0.4350 -0.9310 27 1 -0.3634 -1.0237 0.0889 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.7476 1.9312 0.9294 31 1 1.6091 1.9803 -0.8445 32 1 5.1393 2.7371 0.1483 33 1 3.5886 3.5417 -0.1926 34 1 5.2103 5.7416 2.2762 35 1 3.8381 2.0450 -2.0995 36 1 3.2891 0.3633 -1.9029 37 1 6.0047 1.4180 -0.9958 38 1 5.7191 0.5316 -2.5128 39 1 9.0109 -2.4735 -0.2584 40 1 9.2811 -4.6859 0.7815 41 1 7.3197 -5.8894 1.6511 42 1 5.0789 -4.8868 1.4926 43 1 4.7868 -2.6732 0.4613 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209045403.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:45 Heat of formation + Delta-G solvation = -84.159926 kcal Electronic energy + Delta-G solvation = -23130.436796 eV Core-core repulsion = 19753.631388 eV Total energy + Delta-G solvation = -3376.805409 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.56901 -39.70365 -38.87584 -37.33520 -34.96620 -34.00699 -32.48512 -31.91346 -30.96221 -28.83558 -26.37967 -25.48621 -24.17237 -23.45916 -22.54726 -21.88697 -21.20971 -19.12359 -18.58198 -18.14625 -17.54656 -16.97309 -16.69859 -16.16875 -16.07295 -15.70206 -15.38078 -15.25932 -14.83902 -14.41957 -14.35012 -14.07710 -13.95325 -13.71931 -13.60517 -13.46552 -12.91153 -12.75018 -12.62767 -12.56745 -12.42450 -12.31312 -12.02562 -11.95418 -11.72834 -11.57794 -11.53087 -11.35807 -11.10293 -10.61766 -10.01597 -9.95217 -8.99401 -8.22012 -6.31327 -0.28521 0.42060 1.37821 1.41532 1.49161 1.53442 1.66795 2.38350 2.84400 3.09951 3.20306 3.59981 3.93425 3.97084 4.03700 4.06101 4.21978 4.24702 4.26612 4.42774 4.47100 4.48133 4.58806 4.60377 4.69778 4.80153 4.86377 4.97520 5.01491 5.08553 5.18903 5.20818 5.29265 5.32798 5.37665 5.46563 5.49486 5.51293 5.56748 5.64574 5.94278 6.05455 6.36847 6.61317 6.70781 6.84850 7.37940 8.89078 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011662 B = 0.004477 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.402566 B = 6252.256331 C = 6945.280162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C 0.063 3.937 4 N -0.539 5.539 5 C 0.207 3.793 6 C -0.520 4.520 7 H 0.062 0.938 8 C 0.001 3.999 9 N -0.936 5.936 10 Si 0.966 3.034 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.263 1.263 14 C 0.055 3.945 15 C 0.080 3.920 16 O -0.333 6.333 17 C 0.498 3.502 18 O -0.550 6.550 19 C -0.149 4.149 20 C -0.073 4.073 21 C -0.131 4.131 22 C -0.077 4.077 23 C -0.132 4.132 24 C -0.068 4.068 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.025 0.975 32 H -0.002 1.002 33 H -0.036 1.036 34 H 0.264 0.736 35 H 0.054 0.946 36 H 0.105 0.895 37 H 0.040 0.960 38 H 0.090 0.910 39 H 0.127 0.873 40 H 0.160 0.840 41 H 0.166 0.834 42 H 0.159 0.841 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.334 -21.272 -4.153 21.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.144 4.144 3 C -0.065 4.065 4 N -0.264 5.264 5 C 0.081 3.919 6 C -0.558 4.558 7 H 0.080 0.920 8 C -0.197 4.197 9 N -0.576 5.576 10 Si 0.791 3.209 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.188 1.188 14 C -0.073 4.073 15 C 0.006 3.994 16 O -0.248 6.248 17 C 0.346 3.654 18 O -0.443 6.443 19 C -0.150 4.150 20 C -0.092 4.092 21 C -0.148 4.148 22 C -0.095 4.095 23 C -0.150 4.150 24 C -0.086 4.086 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.043 0.957 32 H 0.016 0.984 33 H -0.019 1.019 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.123 0.877 37 H 0.058 0.942 38 H 0.108 0.892 39 H 0.145 0.855 40 H 0.178 0.822 41 H 0.184 0.816 42 H 0.177 0.823 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.832 -21.235 -3.938 21.613 hybrid contribution 0.121 2.006 0.099 2.012 sum -0.711 -19.230 -3.839 19.622 Atomic orbital electron populations 1.21703 0.94420 1.02316 1.01715 1.21430 0.95980 0.94911 1.02113 1.22074 0.86550 0.97776 1.00113 1.62003 1.10084 1.34016 1.20263 1.19399 0.93070 0.84495 0.94958 1.21409 1.36429 1.03656 0.94319 0.91957 1.25910 0.94897 0.95444 1.03470 1.70083 1.39866 1.09493 1.38166 0.85479 0.79001 0.77279 0.79153 1.19684 1.20842 1.18769 1.22210 0.93942 1.00346 0.90796 1.23149 0.98575 0.82293 0.95375 1.86559 1.30138 1.38456 1.69629 1.21893 0.81191 0.86964 0.75385 1.90774 1.41454 1.61568 1.50465 1.19262 0.96789 0.92013 1.06944 1.21418 0.95173 0.96041 0.96545 1.21475 1.01240 0.93603 0.98525 1.21923 0.91731 1.00656 0.95158 1.21558 0.99442 0.94609 0.99367 1.21666 0.98094 0.94875 0.93988 0.93395 0.92406 0.91042 0.91434 0.92584 0.92430 0.95705 0.98398 1.01858 0.92765 0.92761 0.87685 0.94178 0.89186 0.85512 0.82208 0.81614 0.82300 0.84587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 9.91 71.98 0.71 -2.63 16 2 C -0.11 -3.11 6.09 30.59 0.19 -2.92 16 3 C 0.06 2.38 4.79 86.30 0.41 2.79 16 4 N -0.54 -23.45 4.31 -900.80 -3.88 -27.33 16 5 C 0.21 11.32 4.55 85.56 0.39 11.71 16 6 C -0.52 -30.24 8.23 25.60 0.21 -30.03 16 7 H 0.06 3.56 7.31 -2.91 -0.02 3.53 16 8 C 0.00 0.04 5.46 84.65 0.46 0.50 16 9 N -0.94 -58.01 13.29 21.45 0.28 -57.72 16 10 Si 0.97 45.50 29.54 68.60 2.03 47.52 16 11 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 13 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 14 C 0.06 1.96 5.20 86.30 0.45 2.41 16 15 C 0.08 2.98 5.76 71.98 0.41 3.40 16 16 O -0.33 -12.36 9.44 -56.22 -0.53 -12.89 16 17 C 0.50 18.53 7.88 70.33 0.55 19.08 16 18 O -0.55 -23.44 16.06 19.92 0.32 -23.12 16 19 C -0.15 -4.39 5.87 -20.10 -0.12 -4.51 16 20 C -0.07 -1.82 9.59 22.54 0.22 -1.60 16 21 C -0.13 -2.19 10.03 22.23 0.22 -1.97 16 22 C -0.08 -1.06 10.04 22.33 0.22 -0.84 16 23 C -0.13 -2.22 10.03 22.23 0.22 -2.00 16 24 C -0.07 -1.65 9.62 22.54 0.22 -1.43 16 25 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 26 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.07 1.79 6.67 -2.38 -0.02 1.78 16 29 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.06 2.50 6.58 -2.39 -0.02 2.48 16 31 H 0.02 0.89 8.00 -2.39 -0.02 0.87 16 32 H 0.00 -0.12 6.58 -2.38 -0.02 -0.14 16 33 H -0.04 -2.12 8.12 -2.39 -0.02 -2.14 16 34 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 35 H 0.05 1.90 8.00 -2.39 -0.02 1.88 16 36 H 0.11 3.06 6.45 -2.39 -0.02 3.04 16 37 H 0.04 1.80 6.51 -2.38 -0.02 1.78 16 38 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 39 H 0.13 3.24 7.66 -2.91 -0.02 3.22 16 40 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 41 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 42 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 43 H 0.14 3.35 7.62 -2.91 -0.02 3.33 16 Total: -1.00 -73.81 359.69 3.98 -69.83 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 0.98 Total: 11.75 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: 4.78 Total: -8.04 kcal Atomic # 7 Polarization: -81.46 SS G_CDS: -3.59 Total: -85.05 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -0.21 Total: -36.01 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -73.81 3.98 -69.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209045403.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.334 kcal (2) G-P(sol) polarization free energy of solvation -73.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds