Wall clock time and date at job start Tue Mar 31 2020 06:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36007 * 117.00379 * 2 1 4 4 C 1.38706 * 120.01925 * 359.72772 * 3 2 1 5 5 C 1.38782 * 120.53889 * 179.76322 * 4 3 2 6 6 C 1.36486 * 120.57494 * 0.50981 * 5 4 3 7 7 C 1.40773 * 120.02691 * 359.74968 * 6 5 4 8 8 C 1.41179 * 120.26644 * 179.97438 * 7 6 5 9 9 H 1.07998 * 120.00045 * 154.95456 * 8 7 6 10 10 C 1.39927 * 119.99907 * 334.95549 * 8 7 6 11 11 N 1.30875 * 119.99656 * 342.40808 * 10 8 7 12 12 Si 1.86799 * 120.00143 * 162.40458 * 10 8 7 13 13 H 1.48499 * 109.46803 * 94.65305 * 12 10 8 14 14 H 1.48493 * 109.47206 * 214.65222 * 12 10 8 15 15 H 1.48503 * 109.47127 * 334.65423 * 12 10 8 16 16 C 1.38878 * 120.02591 * 179.97438 * 3 2 1 17 17 O 1.35743 * 120.28170 * 0.02562 * 16 3 2 18 18 C 1.42891 * 117.00565 * 89.99397 * 17 16 3 19 19 C 1.53933 * 113.73632 * 246.72974 * 18 17 16 20 20 N 1.47965 * 86.18272 * 221.91960 * 19 18 17 21 21 C 1.46897 * 111.00183 * 137.57985 * 20 19 18 22 22 C 1.52998 * 109.47096 * 80.63882 * 21 20 19 23 23 C 1.52995 * 109.46874 * 200.64019 * 21 20 19 24 24 C 1.47963 * 90.76022 * 24.68837 * 20 19 18 25 25 H 1.09001 * 109.47196 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47052 * 59.99435 * 1 2 3 27 27 H 1.09000 * 109.47116 * 299.99860 * 1 2 3 28 28 H 1.08001 * 119.73191 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.70658 * 180.23586 * 5 4 3 30 30 H 1.08001 * 119.98660 * 179.76279 * 6 5 4 31 31 H 0.96998 * 119.99303 * 179.97438 * 11 10 8 32 32 H 1.09008 * 112.93836 * 18.43301 * 18 17 16 33 33 H 1.09003 * 113.75679 * 336.23594 * 19 18 17 34 34 H 1.08999 * 113.75986 * 107.59981 * 19 18 17 35 35 H 1.08995 * 109.47107 * 320.64014 * 21 20 19 36 36 H 1.09013 * 109.46961 * 60.00085 * 22 21 20 37 37 H 1.09000 * 109.47525 * 179.97438 * 22 21 20 38 38 H 1.08995 * 109.47213 * 300.00351 * 22 21 20 39 39 H 1.09001 * 109.47618 * 299.99678 * 23 21 20 40 40 H 1.09002 * 109.47504 * 60.00355 * 23 21 20 41 41 H 1.09003 * 109.47069 * 180.02562 * 23 21 20 42 42 H 1.09004 * 113.75541 * 220.99878 * 24 20 19 43 43 H 1.08993 * 113.76023 * 89.63124 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2916 2.3754 -0.0057 5 6 1.9104 3.6176 -0.0008 6 6 3.2718 3.7150 -0.0008 7 6 4.0614 2.5495 -0.0004 8 6 5.4700 2.6444 -0.0009 9 1 6.0659 1.8355 0.3953 10 6 6.0941 3.7865 -0.5147 11 7 5.4291 4.6010 -1.2939 12 14 7.8764 4.1487 -0.0885 13 1 8.7594 3.6104 -1.1543 14 1 8.0708 5.6168 0.0208 15 1 8.2159 3.5066 1.2068 16 6 3.4334 1.2850 0.0005 17 8 4.1787 0.1505 0.0005 18 6 4.5353 -0.3915 -1.2726 19 6 3.8804 -1.7519 -1.5723 20 7 5.1962 -2.1540 -2.1167 21 6 5.5451 -3.5178 -1.6969 22 6 4.8250 -4.5273 -2.5933 23 6 7.0573 -3.7171 -1.8168 24 6 5.8757 -1.1485 -1.2702 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 0.5138 0.8900 28 1 0.2133 2.3142 -0.0097 29 1 1.3095 4.5149 -0.0015 30 1 3.7435 4.6865 -0.0008 31 1 5.8616 5.3929 -1.6497 32 1 4.4409 0.3309 -2.0834 33 1 3.5871 -2.3043 -0.6795 34 1 3.0910 -1.7036 -2.3223 35 1 5.2397 -3.6687 -0.6616 36 1 5.1305 -4.3764 -3.6288 37 1 5.0842 -5.5392 -2.2821 38 1 3.7477 -4.3852 -2.5079 39 1 7.3628 -3.5663 -2.8522 40 1 7.5703 -2.9980 -1.1782 41 1 7.3162 -4.7292 -1.5058 42 1 6.6806 -0.6180 -1.7791 43 1 6.1661 -1.5244 -0.2892 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225843220.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:23 Heat of formation + Delta-G solvation = -24.002005 kcal Electronic energy + Delta-G solvation = -24027.788399 eV Core-core repulsion = 20653.591633 eV Total energy + Delta-G solvation = -3374.196766 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.82429 -38.83009 -36.82495 -35.55496 -33.51683 -33.30035 -29.47112 -28.59265 -27.58127 -26.50802 -26.05229 -25.09982 -24.93969 -21.15451 -20.83852 -20.07725 -19.34971 -17.89907 -16.75980 -16.01341 -15.83856 -15.49593 -14.97430 -14.81482 -14.63168 -14.35357 -13.88315 -13.41840 -13.21034 -13.10406 -12.81298 -12.49116 -12.06980 -12.01979 -12.00269 -11.77273 -11.52428 -11.41550 -11.14315 -11.05501 -11.02689 -10.76141 -10.65842 -10.49874 -10.19716 -10.01449 -9.96573 -9.56858 -9.20329 -8.62020 -8.52579 -7.46300 -6.96795 -6.79389 -4.46174 2.61392 2.87082 3.03019 3.07516 3.16662 3.85267 4.17986 4.24749 4.49182 4.78660 4.95083 5.08809 5.29252 5.35910 5.52888 5.62073 5.65304 5.67497 5.69221 5.78280 5.81345 5.86645 5.91324 5.95456 6.04066 6.16859 6.21072 6.21989 6.27880 6.29511 6.45027 6.63149 6.66775 6.80946 6.92005 7.08401 7.18191 7.41301 7.59987 7.71428 7.88338 8.00820 8.37195 8.40187 8.68811 8.76765 9.17177 10.04071 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011224 B = 0.006670 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2494.074006 B = 4197.038952 C = 6422.527156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.320 6.320 3 C 0.138 3.862 4 C -0.321 4.321 5 C -0.076 4.076 6 C -0.180 4.180 7 C 0.127 3.873 8 C -0.435 4.435 9 H 0.087 0.913 10 C 0.076 3.924 11 N -0.782 5.782 12 Si 0.909 3.091 13 H -0.268 1.268 14 H -0.274 1.274 15 H -0.258 1.258 16 C -0.067 4.067 17 O -0.296 6.296 18 C 0.073 3.927 19 C -0.008 4.008 20 N -0.477 5.477 21 C 0.043 3.957 22 C -0.137 4.137 23 C -0.146 4.146 24 C 0.006 3.994 25 H 0.082 0.918 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.121 0.879 31 H 0.283 0.717 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.046 0.954 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.089 0.911 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.013 -8.975 -0.957 9.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.234 6.234 3 C 0.093 3.907 4 C -0.341 4.341 5 C -0.095 4.095 6 C -0.199 4.199 7 C 0.124 3.876 8 C -0.464 4.464 9 H 0.105 0.895 10 C -0.144 4.144 11 N -0.407 5.407 12 Si 0.733 3.267 13 H -0.194 1.194 14 H -0.199 1.199 15 H -0.181 1.181 16 C -0.113 4.113 17 O -0.211 6.211 18 C 0.016 3.984 19 C -0.137 4.137 20 N -0.202 5.202 21 C -0.066 4.066 22 C -0.195 4.195 23 C -0.203 4.203 24 C -0.122 4.122 25 H 0.101 0.899 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.139 0.861 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.108 0.892 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.710 -9.075 -1.649 9.251 hybrid contribution 0.210 0.424 0.689 0.836 sum -0.500 -8.651 -0.960 8.719 Atomic orbital electron populations 1.22783 0.80887 1.01850 1.00607 1.86063 1.19308 1.28485 1.89522 1.19161 0.91278 0.83166 0.97084 1.20289 0.97274 0.92282 1.24238 1.20223 0.95023 0.95112 0.99109 1.20930 0.92029 0.98900 1.08059 1.17612 0.93675 0.89120 0.87205 1.19543 0.91564 1.01727 1.33535 0.89502 1.26006 1.00884 0.94958 0.92538 1.69860 1.38603 1.11035 1.21161 0.86271 0.81606 0.78432 0.80408 1.19355 1.19932 1.18136 1.17854 0.84896 0.86233 1.22302 1.86100 1.69894 1.39432 1.25717 1.24071 0.92682 0.92968 0.88719 1.24470 0.93152 0.97396 0.98645 1.68512 1.04680 1.01558 1.45423 1.22141 0.95981 0.91014 0.97445 1.21715 1.00217 0.97354 1.00204 1.21845 0.94771 1.01153 1.02543 1.24181 0.98175 0.93383 0.96507 0.89907 0.93668 0.93637 0.88499 0.89074 0.86111 0.90606 0.89380 0.90944 0.90031 0.93606 0.92069 0.92768 0.92828 0.91998 0.92454 0.92592 0.89249 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 9.81 101.05 0.99 1.53 16 2 O -0.32 -6.71 10.28 -34.30 -0.35 -7.06 16 3 C 0.14 3.24 6.69 -39.17 -0.26 2.98 16 4 C -0.32 -7.20 9.05 -39.21 -0.35 -7.55 16 5 C -0.08 -1.76 9.96 -40.01 -0.40 -2.16 16 6 C -0.18 -4.57 8.63 -39.26 -0.34 -4.91 16 7 C 0.13 3.35 5.58 -106.70 -0.60 2.76 16 8 C -0.44 -11.24 8.71 -37.83 -0.33 -11.57 16 9 H 0.09 2.23 7.66 -52.49 -0.40 1.83 16 10 C 0.08 1.83 5.14 -17.33 -0.09 1.74 16 11 N -0.78 -19.37 10.98 55.55 0.61 -18.76 16 12 Si 0.91 18.13 29.59 -169.99 -5.03 13.10 16 13 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 14 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 15 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 16 C -0.07 -1.70 5.66 -38.22 -0.22 -1.92 16 17 O -0.30 -7.05 9.16 -33.48 -0.31 -7.36 16 18 C 0.07 1.51 4.56 -25.80 -0.12 1.39 16 19 C -0.01 -0.14 7.43 -2.76 -0.02 -0.16 16 20 N -0.48 -7.78 5.99 -230.50 -1.38 -9.16 16 21 C 0.04 0.59 2.32 -67.72 -0.16 0.43 16 22 C -0.14 -1.63 9.37 37.16 0.35 -1.28 16 23 C -0.15 -1.75 9.09 37.16 0.34 -1.41 16 24 C 0.01 0.11 6.56 -2.76 -0.02 0.09 16 25 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.04 0.67 7.65 -51.93 -0.40 0.28 16 27 H 0.05 0.68 7.67 -51.93 -0.40 0.28 16 28 H 0.10 1.91 6.27 -52.49 -0.33 1.58 16 29 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 30 H 0.12 3.12 6.18 -52.49 -0.32 2.80 16 31 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 32 H 0.09 1.99 7.96 -51.92 -0.41 1.58 16 33 H 0.07 1.29 7.62 -51.93 -0.40 0.89 16 34 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 35 H 0.05 0.65 7.62 -51.93 -0.40 0.26 16 36 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.65 7.91 -51.93 -0.41 0.24 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.71 7.02 -51.93 -0.36 0.35 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 43 H 0.07 1.26 7.66 -51.93 -0.40 0.86 16 LS Contribution 350.45 15.07 5.28 5.28 Total: -1.00 -27.41 350.45 -9.14 -36.56 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -6.74 Total: 7.43 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: -1.22 Total: -20.03 kcal Atomic # 7 Polarization: -27.15 SS G_CDS: -0.77 Total: -27.92 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.66 Total: -14.42 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -27.41 -9.14 -36.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225843220.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.554 kcal (2) G-P(sol) polarization free energy of solvation -27.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds