Wall clock time and date at job start Tue Mar 31 2020 06:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36007 * 117.00379 * 2 1 4 4 C 1.38706 * 120.01925 * 359.72772 * 3 2 1 5 5 C 1.38782 * 120.53889 * 179.76322 * 4 3 2 6 6 C 1.36486 * 120.57494 * 0.50981 * 5 4 3 7 7 C 1.40773 * 120.02691 * 359.74968 * 6 5 4 8 8 C 1.41179 * 120.26644 * 179.97438 * 7 6 5 9 9 H 1.07998 * 120.00045 * 154.95456 * 8 7 6 10 10 C 1.39927 * 119.99907 * 334.95549 * 8 7 6 11 11 N 1.30875 * 119.99656 * 342.40808 * 10 8 7 12 12 Si 1.86799 * 120.00143 * 162.40458 * 10 8 7 13 13 H 1.48499 * 109.46803 * 94.65305 * 12 10 8 14 14 H 1.48493 * 109.47206 * 214.65222 * 12 10 8 15 15 H 1.48503 * 109.47127 * 334.65423 * 12 10 8 16 16 C 1.38878 * 120.02591 * 179.97438 * 3 2 1 17 17 O 1.35743 * 120.28170 * 0.02562 * 16 3 2 18 18 C 1.42891 * 117.00565 * 89.99397 * 17 16 3 19 19 C 1.53933 * 113.73632 * 246.72974 * 18 17 16 20 20 N 1.47965 * 86.18272 * 221.91960 * 19 18 17 21 21 C 1.46897 * 111.00183 * 137.57985 * 20 19 18 22 22 C 1.52998 * 109.47096 * 80.63882 * 21 20 19 23 23 C 1.52995 * 109.46874 * 200.64019 * 21 20 19 24 24 C 1.47963 * 90.76022 * 24.68837 * 20 19 18 25 25 H 1.09001 * 109.47196 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47052 * 59.99435 * 1 2 3 27 27 H 1.09000 * 109.47116 * 299.99860 * 1 2 3 28 28 H 1.08001 * 119.73191 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.70658 * 180.23586 * 5 4 3 30 30 H 1.08001 * 119.98660 * 179.76279 * 6 5 4 31 31 H 0.96998 * 119.99303 * 179.97438 * 11 10 8 32 32 H 1.09008 * 112.93836 * 18.43301 * 18 17 16 33 33 H 1.09003 * 113.75679 * 336.23594 * 19 18 17 34 34 H 1.08999 * 113.75986 * 107.59981 * 19 18 17 35 35 H 1.08995 * 109.47107 * 320.64014 * 21 20 19 36 36 H 1.09013 * 109.46961 * 60.00085 * 22 21 20 37 37 H 1.09000 * 109.47525 * 179.97438 * 22 21 20 38 38 H 1.08995 * 109.47213 * 300.00351 * 22 21 20 39 39 H 1.09001 * 109.47618 * 299.99678 * 23 21 20 40 40 H 1.09002 * 109.47504 * 60.00355 * 23 21 20 41 41 H 1.09003 * 109.47069 * 180.02562 * 23 21 20 42 42 H 1.09004 * 113.75541 * 220.99878 * 24 20 19 43 43 H 1.08993 * 113.76023 * 89.63124 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2916 2.3754 -0.0057 5 6 1.9104 3.6176 -0.0008 6 6 3.2718 3.7150 -0.0008 7 6 4.0614 2.5495 -0.0004 8 6 5.4700 2.6444 -0.0009 9 1 6.0659 1.8355 0.3953 10 6 6.0941 3.7865 -0.5147 11 7 5.4291 4.6010 -1.2939 12 14 7.8764 4.1487 -0.0885 13 1 8.7594 3.6104 -1.1543 14 1 8.0708 5.6168 0.0208 15 1 8.2159 3.5066 1.2068 16 6 3.4334 1.2850 0.0005 17 8 4.1787 0.1505 0.0005 18 6 4.5353 -0.3915 -1.2726 19 6 3.8804 -1.7519 -1.5723 20 7 5.1962 -2.1540 -2.1167 21 6 5.5451 -3.5178 -1.6969 22 6 4.8250 -4.5273 -2.5933 23 6 7.0573 -3.7171 -1.8168 24 6 5.8757 -1.1485 -1.2702 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 0.5138 0.8900 28 1 0.2133 2.3142 -0.0097 29 1 1.3095 4.5149 -0.0015 30 1 3.7435 4.6865 -0.0008 31 1 5.8616 5.3929 -1.6497 32 1 4.4409 0.3309 -2.0834 33 1 3.5871 -2.3043 -0.6795 34 1 3.0910 -1.7036 -2.3223 35 1 5.2397 -3.6687 -0.6616 36 1 5.1305 -4.3764 -3.6288 37 1 5.0842 -5.5392 -2.2821 38 1 3.7477 -4.3852 -2.5079 39 1 7.3628 -3.5663 -2.8522 40 1 7.5703 -2.9980 -1.1782 41 1 7.3162 -4.7292 -1.5058 42 1 6.6806 -0.6180 -1.7791 43 1 6.1661 -1.5244 -0.2892 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225843220.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:22 Heat of formation + Delta-G solvation = -40.099636 kcal Electronic energy + Delta-G solvation = -24028.486445 eV Core-core repulsion = 20653.591633 eV Total energy + Delta-G solvation = -3374.894811 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.33419 -40.45883 -38.49091 -37.26976 -35.32671 -34.54538 -31.32483 -30.27125 -28.65229 -28.00419 -27.55698 -26.68603 -26.41088 -22.84003 -22.62647 -21.47030 -20.79759 -19.65985 -18.46885 -17.63961 -17.35915 -17.21128 -16.52344 -16.39834 -16.08057 -15.66760 -15.30933 -15.00886 -14.68730 -14.66479 -14.38886 -13.77433 -13.64175 -13.53299 -13.27102 -13.02491 -12.95021 -12.84767 -12.64103 -12.56875 -12.39715 -12.20663 -12.12487 -11.92663 -11.73979 -11.64498 -11.56309 -11.26946 -11.00925 -10.28817 -9.90536 -9.33480 -8.77831 -8.60447 -6.38553 0.80647 1.05048 1.38094 1.48146 1.54488 2.18740 2.61716 2.71114 2.86821 3.13286 3.64610 3.72588 3.95696 4.04517 4.12362 4.20275 4.33617 4.42081 4.45036 4.47320 4.52873 4.61709 4.70162 4.78058 4.79037 4.81466 4.87621 4.91046 4.98397 5.01722 5.05505 5.09446 5.11357 5.25817 5.32859 5.37004 5.47637 5.74973 5.90557 6.02515 6.10706 6.11544 6.48624 6.66236 6.80312 6.89373 7.35021 8.25405 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011224 B = 0.006670 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2494.074006 B = 4197.038952 C = 6422.527156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.333 6.333 3 C 0.132 3.868 4 C -0.318 4.318 5 C -0.077 4.077 6 C -0.205 4.205 7 C 0.099 3.901 8 C -0.465 4.465 9 H 0.075 0.925 10 C 0.040 3.960 11 N -0.811 5.811 12 Si 0.978 3.022 13 H -0.261 1.261 14 H -0.262 1.262 15 H -0.260 1.260 16 C -0.088 4.088 17 O -0.312 6.312 18 C 0.060 3.940 19 C 0.009 3.991 20 N -0.475 5.475 21 C 0.037 3.963 22 C -0.132 4.132 23 C -0.142 4.142 24 C 0.016 3.984 25 H 0.117 0.883 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.129 0.871 29 H 0.119 0.881 30 H 0.109 0.891 31 H 0.292 0.708 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.043 0.957 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.048 0.952 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.299 -10.366 -1.070 10.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.247 6.247 3 C 0.087 3.913 4 C -0.337 4.337 5 C -0.095 4.095 6 C -0.225 4.225 7 C 0.095 3.905 8 C -0.494 4.494 9 H 0.093 0.907 10 C -0.176 4.176 11 N -0.435 5.435 12 Si 0.798 3.202 13 H -0.186 1.186 14 H -0.186 1.186 15 H -0.184 1.184 16 C -0.134 4.134 17 O -0.227 6.227 18 C 0.003 3.997 19 C -0.120 4.120 20 N -0.200 5.200 21 C -0.072 4.072 22 C -0.190 4.190 23 C -0.199 4.199 24 C -0.112 4.112 25 H 0.135 0.865 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.147 0.853 29 H 0.137 0.863 30 H 0.126 0.874 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.023 -10.479 -1.771 10.677 hybrid contribution 0.143 0.748 0.703 1.036 sum -0.881 -9.731 -1.068 9.829 Atomic orbital electron populations 1.23164 0.77888 1.04536 1.01433 1.86035 1.22337 1.27216 1.89157 1.19257 0.91082 0.84545 0.96412 1.20645 0.98880 0.91528 1.22688 1.20548 0.94454 0.96713 0.97798 1.20920 0.93180 0.98154 1.10247 1.17971 0.94418 0.90095 0.87984 1.19617 0.91754 1.02691 1.35294 0.90710 1.26760 1.04974 0.94149 0.91764 1.69889 1.40479 1.11567 1.21601 0.85250 0.76264 0.78731 0.79942 1.18574 1.18578 1.18366 1.18126 0.86159 0.86373 1.22728 1.86015 1.70204 1.39086 1.27417 1.24201 0.95490 0.93358 0.86698 1.24296 0.93810 0.95215 0.98674 1.68530 1.03499 1.02997 1.44989 1.22306 0.97522 0.89595 0.97727 1.21691 0.99619 0.97961 0.99712 1.21828 0.93230 1.02419 1.02451 1.24089 0.96837 0.93282 0.97003 0.86476 0.92809 0.92666 0.85281 0.86280 0.87356 0.89734 0.92440 0.90805 0.89780 0.93906 0.92142 0.90371 0.93311 0.92040 0.93219 0.90191 0.89314 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.70 9.81 113.37 1.11 1.81 16 2 O -0.33 -13.65 10.28 -79.74 -0.82 -14.47 16 3 C 0.13 6.24 6.69 22.54 0.15 6.39 16 4 C -0.32 -13.93 9.05 22.51 0.20 -13.72 16 5 C -0.08 -3.54 9.96 21.99 0.22 -3.32 16 6 C -0.21 -10.79 8.63 22.48 0.19 -10.59 16 7 C 0.10 5.42 5.58 -21.21 -0.12 5.30 16 8 C -0.47 -25.18 8.71 23.40 0.20 -24.98 16 9 H 0.07 4.07 7.66 -2.91 -0.02 4.04 16 10 C 0.04 2.01 5.14 85.24 0.44 2.44 16 11 N -0.81 -41.30 10.98 21.83 0.24 -41.06 16 12 Si 0.98 37.77 29.59 68.60 2.03 39.80 16 13 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 14 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 15 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 16 C -0.09 -4.62 5.66 23.15 0.13 -4.49 16 17 O -0.31 -15.40 9.16 -76.78 -0.70 -16.10 16 18 C 0.06 2.56 4.56 31.24 0.14 2.70 16 19 C 0.01 0.31 7.43 86.40 0.64 0.95 16 20 N -0.47 -15.25 5.99 -886.38 -5.31 -20.55 16 21 C 0.04 0.95 2.32 44.91 0.10 1.06 16 22 C -0.13 -2.82 9.37 71.98 0.67 -2.14 16 23 C -0.14 -3.12 9.09 71.98 0.65 -2.46 16 24 C 0.02 0.59 6.56 86.41 0.57 1.16 16 25 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 26 H 0.05 1.45 7.65 -2.39 -0.02 1.43 16 27 H 0.05 1.48 7.67 -2.39 -0.02 1.46 16 28 H 0.13 4.72 6.27 -2.91 -0.02 4.70 16 29 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 30 H 0.11 5.84 6.18 -2.91 -0.02 5.82 16 31 H 0.29 13.32 8.30 -92.71 -0.77 12.55 16 32 H 0.06 2.76 7.96 -2.38 -0.02 2.74 16 33 H 0.07 2.58 7.62 -2.39 -0.02 2.56 16 34 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 35 H 0.04 1.14 7.62 -2.39 -0.02 1.13 16 36 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.05 1.08 7.91 -2.39 -0.02 1.06 16 39 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.05 1.16 7.02 -2.39 -0.02 1.14 16 41 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.09 3.16 8.14 -2.38 -0.02 3.14 16 43 H 0.08 2.68 7.66 -2.39 -0.02 2.66 16 Total: -1.00 -61.34 350.45 1.75 -59.59 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: 0.99 Total: 32.68 kcal Atomic # 6 Polarization: -45.21 SS G_CDS: 5.32 Total: -39.89 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: -5.07 Total: -61.61 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -1.52 Total: -30.57 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.03 Total: 39.80 kcal Total: -61.34 1.75 -59.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225843220.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.493 kcal (2) G-P(sol) polarization free energy of solvation -61.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds