Wall clock time and date at job start Tue Mar 31 2020 06:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47223 * 2 1 4 4 N 1.46901 * 109.47161 * 180.22556 * 3 2 1 5 5 C 1.46903 * 110.99842 * 59.78228 * 4 3 2 6 6 C 1.50694 * 109.47111 * 68.30743 * 5 4 3 7 7 H 1.08002 * 120.00172 * 5.21388 * 6 5 4 8 8 C 1.37873 * 119.99781 * 185.22053 * 6 5 4 9 9 N 1.31514 * 120.00473 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00048 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47267 * 59.99062 * 10 8 6 12 12 H 1.48500 * 109.47242 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46837 * 299.99726 * 10 8 6 14 14 C 1.46904 * 110.99953 * 295.82711 * 4 3 2 15 15 C 1.50694 * 109.47248 * 287.33872 * 14 4 3 16 16 C 1.38240 * 119.96744 * 265.65874 * 15 14 4 17 17 C 1.38218 * 120.11849 * 180.02562 * 16 15 14 18 18 C 1.38241 * 120.10881 * 0.06669 * 17 16 15 19 19 C 1.38655 * 120.06502 * 0.23023 * 18 17 16 20 20 C 1.38665 * 119.96970 * 85.68127 * 15 14 4 21 21 O 1.36103 * 119.40380 * 359.62533 * 20 15 14 22 22 C 1.43435 * 116.59813 * 162.27933 * 21 20 15 23 23 C 1.53471 * 108.03334 * 46.67926 * 22 21 20 24 24 O 1.36111 * 119.40267 * 179.48352 * 19 18 17 25 25 H 1.09001 * 109.47230 * 59.99490 * 1 2 3 26 26 H 1.09000 * 109.47752 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47410 * 300.00067 * 1 2 3 28 28 H 1.09002 * 109.46723 * 240.00230 * 2 1 3 29 29 H 1.09001 * 109.47230 * 120.00510 * 2 1 3 30 30 H 1.09002 * 109.46937 * 60.22779 * 3 2 1 31 31 H 1.08997 * 109.47527 * 300.22742 * 3 2 1 32 32 H 1.08999 * 109.46674 * 188.30903 * 5 4 3 33 33 H 1.08999 * 109.46897 * 308.30221 * 5 4 3 34 34 H 0.96999 * 120.00118 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.47120 * 167.33717 * 14 4 3 36 36 H 1.09001 * 109.46750 * 47.34016 * 14 4 3 37 37 H 1.08007 * 119.94445 * 0.03668 * 16 15 14 38 38 H 1.07992 * 119.94761 * 180.02562 * 17 16 15 39 39 H 1.08000 * 119.96564 * 179.97438 * 18 17 16 40 40 H 1.09000 * 110.07063 * 286.91347 * 22 21 20 41 41 H 1.08995 * 109.56290 * 166.15852 * 22 21 20 42 42 H 1.08998 * 109.70551 * 180.29243 * 23 22 21 43 43 H 1.09001 * 109.73934 * 59.69096 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0055 5 6 4.0310 0.7538 -1.1934 6 6 3.7162 1.5654 -2.4235 7 1 3.2572 2.5382 -2.3257 8 6 4.0138 1.0661 -3.6736 9 7 4.5730 -0.1183 -3.7927 10 14 3.6243 2.0725 -5.1984 11 1 4.3598 3.3613 -5.1422 12 1 4.0392 1.3185 -6.4086 13 1 2.1643 2.3380 -5.2565 14 6 4.0400 0.8433 1.2263 15 6 3.8290 1.7921 2.3779 16 6 4.8350 2.6661 2.7457 17 6 4.6450 3.5373 3.8018 18 6 3.4488 3.5367 4.4947 19 6 2.4380 2.6585 4.1348 20 6 2.6262 1.7874 3.0678 21 8 1.6423 0.9264 2.6896 22 6 0.6008 0.6818 3.6451 23 6 0.1447 2.0349 4.2075 24 8 1.2696 2.6621 4.8330 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6800 1.9551 0.8920 31 1 1.6734 1.9575 -0.8879 32 1 5.1109 0.6380 -1.1010 33 1 3.5662 -0.2286 -1.2774 34 1 4.7828 -0.4694 -4.6723 35 1 5.1059 0.6495 1.1058 36 1 3.5208 -0.0937 1.4276 37 1 5.7710 2.6683 2.2068 38 1 5.4326 4.2191 4.0866 39 1 3.3030 4.2181 5.3198 40 1 0.9753 0.0548 4.4542 41 1 -0.2366 0.1869 3.1534 42 1 -0.6453 1.8799 4.9424 43 1 -0.2247 2.6644 3.3980 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231885088.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:24 Heat of formation + Delta-G solvation = -42.876173 kcal Electronic energy + Delta-G solvation = -24536.897873 eV Core-core repulsion = 21161.882662 eV Total energy + Delta-G solvation = -3375.015211 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.19749 -38.16225 -37.29006 -36.54376 -32.71193 -32.35721 -31.14502 -30.59075 -28.27659 -27.10118 -26.12778 -24.56838 -23.88323 -22.00802 -21.37455 -20.87434 -19.24674 -18.25988 -17.34685 -16.85944 -16.14370 -15.52720 -15.17579 -14.94798 -14.60699 -14.45015 -14.39439 -13.94714 -13.89664 -13.68198 -13.26817 -12.79639 -12.75583 -12.21932 -11.79605 -11.74946 -11.50297 -11.15848 -11.08533 -10.98675 -10.94729 -10.82550 -10.65223 -10.58786 -10.34860 -10.26005 -9.84877 -9.50446 -9.17036 -8.38174 -8.24773 -7.90434 -7.02841 -5.96525 -3.96878 1.49184 1.51697 3.10064 3.32085 3.36839 3.40531 3.44034 3.88890 4.23449 4.48366 4.72181 4.75505 4.83781 5.15721 5.16781 5.26328 5.38143 5.38802 5.40716 5.51535 5.62687 5.68218 5.73012 5.94002 5.99370 6.00383 6.25515 6.29793 6.33513 6.46655 6.51191 6.56717 6.67974 6.76986 6.84032 6.90486 7.05667 7.15919 7.39797 7.52675 7.55786 7.89006 8.18500 8.31367 8.64553 9.11310 9.66784 11.13920 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019941 B = 0.004882 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.838758 B = 5733.441077 C = 6515.305642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.155 4.155 3 C 0.072 3.928 4 N -0.529 5.529 5 C 0.188 3.812 6 C -0.500 4.500 7 H 0.061 0.939 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.895 3.105 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.278 1.278 14 C 0.090 3.910 15 C -0.052 4.052 16 C -0.100 4.100 17 C -0.118 4.118 18 C -0.125 4.125 19 C 0.043 3.957 20 C 0.055 3.945 21 O -0.286 6.286 22 C 0.016 3.984 23 C 0.022 3.978 24 O -0.312 6.312 25 H 0.049 0.951 26 H 0.041 0.959 27 H 0.043 0.957 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.023 0.977 33 H 0.005 0.995 34 H 0.260 0.740 35 H 0.074 0.926 36 H 0.044 0.956 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.072 0.928 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.804 2.413 17.355 18.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.194 4.194 3 C -0.057 4.057 4 N -0.252 5.252 5 C 0.063 3.937 6 C -0.539 4.539 7 H 0.079 0.921 8 C -0.145 4.145 9 N -0.540 5.540 10 Si 0.723 3.277 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.204 1.204 14 C -0.038 4.038 15 C -0.053 4.053 16 C -0.119 4.119 17 C -0.136 4.136 18 C -0.144 4.144 19 C -0.002 4.002 20 C 0.009 3.991 21 O -0.200 6.200 22 C -0.060 4.060 23 C -0.054 4.054 24 O -0.227 6.227 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.041 0.959 33 H 0.022 0.978 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.150 0.850 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.091 0.909 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.619 2.746 17.176 18.611 hybrid contribution -0.719 -0.435 -0.853 1.197 sum -7.338 2.311 16.323 18.045 Atomic orbital electron populations 1.21612 0.97025 1.00123 1.00742 1.22072 0.95102 1.00413 1.01780 1.22037 0.88072 0.94655 1.00903 1.62383 1.06824 1.54659 1.01285 1.19815 0.94835 0.93059 0.85960 1.21105 1.39567 1.03251 0.89986 0.92103 1.24956 0.95551 0.95049 0.98985 1.69947 1.43136 1.17272 1.23683 0.86611 0.78686 0.80182 0.82214 1.20237 1.21450 1.20380 1.20947 1.00295 0.93647 0.88875 1.19417 0.90028 0.98826 0.97055 1.20893 0.99180 0.95040 0.96767 1.20850 0.96681 0.99814 0.96302 1.20306 0.92817 0.98932 1.02348 1.18830 0.87805 0.97988 0.95561 1.18721 0.90322 0.92927 0.97088 1.86671 1.33131 1.60747 1.39427 1.23614 0.91784 0.96813 0.93784 1.23563 0.87971 0.94181 0.99636 1.86264 1.16897 1.76045 1.43516 0.93199 0.94012 0.93774 0.91255 0.92380 0.92239 0.91170 0.95933 0.97770 0.93012 0.90745 0.93821 0.85047 0.85448 0.85512 0.90930 0.86480 0.86672 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.91 37.16 0.37 -1.73 16 2 C -0.15 -2.89 4.55 -26.73 -0.12 -3.01 16 3 C 0.07 1.45 4.60 -3.82 -0.02 1.43 16 4 N -0.53 -11.61 4.63 -237.52 -1.10 -12.71 16 5 C 0.19 4.88 4.51 -4.98 -0.02 4.86 16 6 C -0.50 -14.12 8.45 -34.44 -0.29 -14.41 16 7 H 0.06 1.73 7.45 -52.49 -0.39 1.34 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 10 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 C 0.09 1.70 4.85 -4.98 -0.02 1.68 16 15 C -0.05 -0.87 5.18 -104.47 -0.54 -1.41 16 16 C -0.10 -1.49 9.67 -39.59 -0.38 -1.87 16 17 C -0.12 -1.52 10.04 -39.59 -0.40 -1.92 16 18 C -0.13 -1.66 9.96 -39.43 -0.39 -2.05 16 19 C 0.04 0.62 6.49 -39.14 -0.25 0.37 16 20 C 0.05 0.86 5.49 -39.13 -0.21 0.65 16 21 O -0.29 -4.18 5.33 -32.84 -0.18 -4.36 16 22 C 0.02 0.17 7.27 37.40 0.27 0.44 16 23 C 0.02 0.22 7.25 37.40 0.27 0.49 16 24 O -0.31 -4.12 10.42 -32.87 -0.34 -4.46 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.59 7.73 -51.93 -0.40 0.19 16 28 H 0.07 1.52 6.22 -51.93 -0.32 1.20 16 29 H 0.06 1.05 5.12 -51.93 -0.27 0.79 16 30 H 0.06 1.14 5.01 -51.93 -0.26 0.88 16 31 H 0.07 1.57 7.13 -51.93 -0.37 1.20 16 32 H 0.02 0.62 7.80 -51.93 -0.41 0.22 16 33 H 0.00 0.13 5.89 -51.93 -0.31 -0.18 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.07 1.38 7.68 -51.93 -0.40 0.98 16 36 H 0.04 0.83 5.47 -51.93 -0.28 0.54 16 37 H 0.13 1.83 8.06 -52.48 -0.42 1.40 16 38 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.12 0.96 7.73 -51.93 -0.40 0.55 16 42 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 334.62 15.07 5.04 5.04 Total: -1.00 -31.36 334.62 -9.03 -40.38 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -6.32 Total: 0.27 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -1.85 Total: -15.00 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: -0.36 Total: -38.75 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: -0.52 Total: -8.82 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.36 -9.03 -40.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231885088.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.493 kcal (2) G-P(sol) polarization free energy of solvation -31.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds