Wall clock time and date at job start Tue Mar 31 2020 06:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47223 * 2 1 4 4 N 1.46901 * 109.47161 * 180.22556 * 3 2 1 5 5 C 1.46903 * 110.99842 * 59.78228 * 4 3 2 6 6 C 1.50694 * 109.47111 * 68.30743 * 5 4 3 7 7 H 1.08002 * 120.00172 * 5.21388 * 6 5 4 8 8 C 1.37873 * 119.99781 * 185.22053 * 6 5 4 9 9 N 1.31514 * 120.00473 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00048 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47267 * 59.99062 * 10 8 6 12 12 H 1.48500 * 109.47242 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46837 * 299.99726 * 10 8 6 14 14 C 1.46904 * 110.99953 * 295.82711 * 4 3 2 15 15 C 1.50694 * 109.47248 * 287.33872 * 14 4 3 16 16 C 1.38240 * 119.96744 * 265.65874 * 15 14 4 17 17 C 1.38218 * 120.11849 * 180.02562 * 16 15 14 18 18 C 1.38241 * 120.10881 * 0.06669 * 17 16 15 19 19 C 1.38655 * 120.06502 * 0.23023 * 18 17 16 20 20 C 1.38665 * 119.96970 * 85.68127 * 15 14 4 21 21 O 1.36103 * 119.40380 * 359.62533 * 20 15 14 22 22 C 1.43435 * 116.59813 * 162.27933 * 21 20 15 23 23 C 1.53471 * 108.03334 * 46.67926 * 22 21 20 24 24 O 1.36111 * 119.40267 * 179.48352 * 19 18 17 25 25 H 1.09001 * 109.47230 * 59.99490 * 1 2 3 26 26 H 1.09000 * 109.47752 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47410 * 300.00067 * 1 2 3 28 28 H 1.09002 * 109.46723 * 240.00230 * 2 1 3 29 29 H 1.09001 * 109.47230 * 120.00510 * 2 1 3 30 30 H 1.09002 * 109.46937 * 60.22779 * 3 2 1 31 31 H 1.08997 * 109.47527 * 300.22742 * 3 2 1 32 32 H 1.08999 * 109.46674 * 188.30903 * 5 4 3 33 33 H 1.08999 * 109.46897 * 308.30221 * 5 4 3 34 34 H 0.96999 * 120.00118 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.47120 * 167.33717 * 14 4 3 36 36 H 1.09001 * 109.46750 * 47.34016 * 14 4 3 37 37 H 1.08007 * 119.94445 * 0.03668 * 16 15 14 38 38 H 1.07992 * 119.94761 * 180.02562 * 17 16 15 39 39 H 1.08000 * 119.96564 * 179.97438 * 18 17 16 40 40 H 1.09000 * 110.07063 * 286.91347 * 22 21 20 41 41 H 1.08995 * 109.56290 * 166.15852 * 22 21 20 42 42 H 1.08998 * 109.70551 * 180.29243 * 23 22 21 43 43 H 1.09001 * 109.73934 * 59.69096 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0055 5 6 4.0310 0.7538 -1.1934 6 6 3.7162 1.5654 -2.4235 7 1 3.2572 2.5382 -2.3257 8 6 4.0138 1.0661 -3.6736 9 7 4.5730 -0.1183 -3.7927 10 14 3.6243 2.0725 -5.1984 11 1 4.3598 3.3613 -5.1422 12 1 4.0392 1.3185 -6.4086 13 1 2.1643 2.3380 -5.2565 14 6 4.0400 0.8433 1.2263 15 6 3.8290 1.7921 2.3779 16 6 4.8350 2.6661 2.7457 17 6 4.6450 3.5373 3.8018 18 6 3.4488 3.5367 4.4947 19 6 2.4380 2.6585 4.1348 20 6 2.6262 1.7874 3.0678 21 8 1.6423 0.9264 2.6896 22 6 0.6008 0.6818 3.6451 23 6 0.1447 2.0349 4.2075 24 8 1.2696 2.6621 4.8330 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6800 1.9551 0.8920 31 1 1.6734 1.9575 -0.8879 32 1 5.1109 0.6380 -1.1010 33 1 3.5662 -0.2286 -1.2774 34 1 4.7828 -0.4694 -4.6723 35 1 5.1059 0.6495 1.1058 36 1 3.5208 -0.0937 1.4276 37 1 5.7710 2.6683 2.2068 38 1 5.4326 4.2191 4.0866 39 1 3.3030 4.2181 5.3198 40 1 0.9753 0.0548 4.4542 41 1 -0.2366 0.1869 3.1534 42 1 -0.6453 1.8799 4.9424 43 1 -0.2247 2.6644 3.3980 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231885088.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:23 Heat of formation + Delta-G solvation = -62.272801 kcal Electronic energy + Delta-G solvation = -24537.738974 eV Core-core repulsion = 21161.882662 eV Total energy + Delta-G solvation = -3375.856312 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.22451 -39.50931 -38.38791 -37.84649 -34.81741 -33.77671 -32.07294 -32.03188 -29.26624 -29.01318 -27.56984 -25.65351 -25.52700 -23.72190 -22.67099 -21.83048 -20.84151 -19.32703 -18.40894 -18.32025 -17.83936 -16.90030 -16.73738 -16.18459 -15.97690 -15.75927 -15.50601 -15.33205 -15.13736 -14.93187 -14.76684 -14.17292 -14.04792 -13.76138 -13.26473 -13.03724 -12.84039 -12.74746 -12.65790 -12.47486 -12.45018 -12.25117 -12.17050 -11.97861 -11.81613 -11.76395 -11.40743 -11.25531 -11.06918 -10.56739 -9.42077 -8.96976 -8.81757 -8.16302 -6.25765 0.35967 0.44117 1.40134 1.43165 1.51041 2.16628 2.40080 2.41606 2.77204 3.15339 3.36192 3.58004 3.75417 3.96080 4.01164 4.12462 4.21343 4.26122 4.31192 4.40849 4.43687 4.56251 4.58667 4.63437 4.66630 4.73749 4.80251 4.94181 5.03532 5.10913 5.16760 5.19578 5.25267 5.35791 5.39862 5.48736 5.59373 5.64831 5.71634 5.79899 6.03954 6.11580 6.42668 6.52335 6.70128 6.90496 7.43159 8.93527 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019941 B = 0.004882 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.838758 B = 5733.441077 C = 6515.305642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.143 4.143 3 C 0.080 3.920 4 N -0.537 5.537 5 C 0.205 3.795 6 C -0.516 4.516 7 H 0.055 0.945 8 C 0.005 3.995 9 N -0.933 5.933 10 Si 0.964 3.036 11 H -0.270 1.270 12 H -0.282 1.282 13 H -0.270 1.270 14 C 0.098 3.902 15 C -0.080 4.080 16 C -0.112 4.112 17 C -0.111 4.111 18 C -0.123 4.123 19 C 0.035 3.965 20 C 0.047 3.953 21 O -0.307 6.307 22 C 0.009 3.991 23 C 0.019 3.981 24 O -0.319 6.319 25 H 0.042 0.958 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.027 0.973 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.043 0.957 32 H -0.004 1.004 33 H -0.019 1.019 34 H 0.263 0.737 35 H 0.066 0.934 36 H 0.039 0.961 37 H 0.132 0.868 38 H 0.160 0.840 39 H 0.152 0.848 40 H 0.079 0.921 41 H 0.142 0.858 42 H 0.153 0.847 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.398 3.762 18.881 21.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.182 4.182 3 C -0.048 4.048 4 N -0.260 5.260 5 C 0.079 3.921 6 C -0.555 4.555 7 H 0.073 0.927 8 C -0.193 4.193 9 N -0.574 5.574 10 Si 0.788 3.212 11 H -0.195 1.195 12 H -0.207 1.207 13 H -0.195 1.195 14 C -0.029 4.029 15 C -0.081 4.081 16 C -0.130 4.130 17 C -0.129 4.129 18 C -0.142 4.142 19 C -0.010 4.010 20 C 0.002 3.998 21 O -0.222 6.222 22 C -0.066 4.066 23 C -0.056 4.056 24 O -0.234 6.234 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.046 0.954 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.062 0.938 32 H 0.014 0.986 33 H -0.001 1.001 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.057 0.943 37 H 0.150 0.850 38 H 0.178 0.822 39 H 0.170 0.830 40 H 0.097 0.903 41 H 0.160 0.840 42 H 0.171 0.829 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.230 4.098 18.726 20.861 hybrid contribution -0.259 -0.869 -1.201 1.505 sum -8.489 3.229 17.525 19.739 Atomic orbital electron populations 1.21560 0.94001 1.01568 1.01648 1.21902 0.97705 0.98668 0.99888 1.21947 0.86972 0.95586 1.00244 1.62284 1.08065 1.54428 1.01210 1.19444 0.93018 0.92116 0.87524 1.21357 1.39675 1.03219 0.91233 0.92688 1.25820 0.95145 0.96117 1.02219 1.70073 1.43936 1.18844 1.24565 0.85528 0.78827 0.78675 0.78137 1.19464 1.20716 1.19482 1.20835 0.99436 0.94229 0.88410 1.19287 0.91755 0.99874 0.97189 1.21052 0.98915 0.95369 0.97699 1.21165 0.97458 0.99248 0.94992 1.20708 0.92351 0.98581 1.02550 1.19017 0.88831 0.97911 0.95243 1.18751 0.90187 0.93499 0.97394 1.86594 1.33781 1.60605 1.41195 1.23944 0.91367 0.97537 0.93745 1.23855 0.87638 0.93371 1.00722 1.86257 1.17054 1.76387 1.43750 0.93924 0.92319 0.91184 0.95431 0.91839 0.90532 0.93842 0.98574 1.00120 0.92805 0.91555 0.94342 0.84963 0.82246 0.83039 0.90277 0.84002 0.82945 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 9.91 71.98 0.71 -3.10 16 2 C -0.14 -5.45 4.55 30.59 0.14 -5.31 16 3 C 0.08 3.34 4.60 86.30 0.40 3.74 16 4 N -0.54 -24.64 4.63 -905.37 -4.19 -28.83 16 5 C 0.20 11.27 4.51 85.55 0.39 11.65 16 6 C -0.52 -30.20 8.45 25.60 0.22 -29.99 16 7 H 0.05 3.21 7.45 -2.91 -0.02 3.19 16 8 C 0.00 0.28 5.46 84.65 0.46 0.74 16 9 N -0.93 -57.09 13.29 21.45 0.28 -56.81 16 10 Si 0.96 45.40 29.54 68.60 2.03 47.42 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 14 C 0.10 3.87 4.85 85.55 0.41 4.29 16 15 C -0.08 -2.69 5.18 -19.76 -0.10 -2.79 16 16 C -0.11 -3.27 9.67 22.27 0.22 -3.06 16 17 C -0.11 -2.60 10.04 22.27 0.22 -2.38 16 18 C -0.12 -2.94 9.96 22.37 0.22 -2.72 16 19 C 0.03 0.95 6.49 22.56 0.15 1.10 16 20 C 0.05 1.45 5.49 22.56 0.12 1.57 16 21 O -0.31 -8.62 5.33 -82.51 -0.44 -9.06 16 22 C 0.01 0.16 7.27 72.14 0.52 0.69 16 23 C 0.02 0.32 7.25 72.14 0.52 0.84 16 24 O -0.32 -7.55 10.42 -82.60 -0.86 -8.41 16 25 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.07 1.69 7.73 -2.39 -0.02 1.67 16 28 H 0.03 1.27 6.22 -2.39 -0.01 1.25 16 29 H 0.06 2.34 5.12 -2.39 -0.01 2.33 16 30 H 0.08 2.93 5.01 -2.39 -0.01 2.92 16 31 H 0.04 2.01 7.13 -2.39 -0.02 1.99 16 32 H 0.00 -0.22 7.80 -2.39 -0.02 -0.24 16 33 H -0.02 -1.11 5.89 -2.39 -0.01 -1.12 16 34 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 35 H 0.07 2.63 7.68 -2.39 -0.02 2.61 16 36 H 0.04 1.53 5.47 -2.39 -0.01 1.51 16 37 H 0.13 3.72 8.06 -2.91 -0.02 3.70 16 38 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 39 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 40 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.14 1.82 7.73 -2.39 -0.02 1.80 16 42 H 0.15 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -70.06 334.62 2.43 -67.62 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 1.00 Total: 12.79 kcal Atomic # 6 Polarization: -29.34 SS G_CDS: 4.61 Total: -24.73 kcal Atomic # 7 Polarization: -81.73 SS G_CDS: -3.90 Total: -85.63 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -1.30 Total: -17.47 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -70.06 2.43 -67.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231885088.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.349 kcal (2) G-P(sol) polarization free energy of solvation -70.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds