Wall clock time and date at job start Tue Mar 31 2020 06:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47224 * 2 1 4 4 N 1.46897 * 109.46945 * 181.74546 * 3 2 1 5 5 C 1.46894 * 111.00457 * 75.70335 * 4 3 2 6 6 C 1.50695 * 109.47330 * 195.59619 * 5 4 3 7 7 H 1.08000 * 119.99920 * 355.03477 * 6 5 4 8 8 C 1.37882 * 120.00345 * 175.03731 * 6 5 4 9 9 N 1.31518 * 119.99500 * 0.02562 * 8 6 5 10 10 Si 1.86790 * 120.00341 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47171 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.47058 * 119.99980 * 10 8 6 13 13 H 1.48506 * 109.47582 * 239.99966 * 10 8 6 14 14 C 1.46906 * 110.99912 * 199.65909 * 4 3 2 15 15 C 1.50704 * 109.47032 * 66.04158 * 14 4 3 16 16 C 1.38386 * 119.84692 * 259.72821 * 15 14 4 17 17 C 1.37930 * 120.14549 * 179.72518 * 16 15 14 18 18 C 1.39642 * 119.84699 * 0.56978 * 17 16 15 19 19 C 1.47722 * 120.14845 * 179.72421 * 18 17 16 20 20 O 1.21481 * 120.00203 * 179.97438 * 19 18 17 21 21 O 1.34713 * 120.00063 * 359.97438 * 19 18 17 22 22 C 1.39613 * 119.70546 * 359.70468 * 18 17 16 23 23 C 1.37967 * 119.84004 * 359.97438 * 22 18 17 24 24 C 1.50706 * 119.92030 * 179.97438 * 23 22 18 25 25 H 1.08998 * 109.47066 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46629 * 299.99956 * 1 2 3 27 27 H 1.08997 * 109.47278 * 59.99771 * 1 2 3 28 28 H 1.09000 * 109.46582 * 239.99499 * 2 1 3 29 29 H 1.09001 * 109.46711 * 119.99767 * 2 1 3 30 30 H 1.08997 * 109.47588 * 61.74185 * 3 2 1 31 31 H 1.09003 * 109.46690 * 301.74063 * 3 2 1 32 32 H 1.08998 * 109.47318 * 315.59715 * 5 4 3 33 33 H 1.09001 * 109.47189 * 75.59129 * 5 4 3 34 34 H 0.97000 * 119.99539 * 180.02562 * 9 8 6 35 35 H 1.08996 * 109.47056 * 186.04659 * 14 4 3 36 36 H 1.09002 * 109.46651 * 306.04587 * 14 4 3 37 37 H 1.07996 * 119.92879 * 0.02562 * 16 15 14 38 38 H 1.08002 * 120.07267 * 180.27276 * 17 16 15 39 39 H 0.96705 * 116.99878 * 179.97438 * 21 19 18 40 40 H 1.07991 * 120.08121 * 180.02562 * 22 18 17 41 41 H 1.08994 * 109.47120 * 270.02124 * 24 23 22 42 42 H 1.09004 * 109.46996 * 30.02164 * 24 23 22 43 43 H 1.08997 * 109.46964 * 150.02122 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5084 1.4426 -0.0422 5 6 3.9965 1.1175 -1.3890 6 6 5.4567 0.7517 -1.3194 7 1 5.9908 0.8369 -0.3846 8 6 6.1110 0.3082 -2.4492 9 7 5.4607 0.2049 -3.5877 10 14 7.9211 -0.1446 -2.3631 11 1 8.4170 0.0589 -0.9782 12 1 8.0938 -1.5691 -2.7459 13 1 8.6917 0.7157 -3.2967 14 6 4.0482 2.7294 0.4170 15 6 3.7314 2.9142 1.8787 16 6 2.6695 3.7169 2.2572 17 6 2.3706 3.8858 3.5931 18 6 3.1495 3.2541 4.5648 19 6 2.8390 3.4352 5.9976 20 8 3.5181 2.8840 6.8407 21 8 1.8028 4.2116 6.3694 22 6 4.2228 2.4502 4.1761 23 6 4.5065 2.2847 2.8361 24 6 5.6650 1.4178 2.4146 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.7025 1.9473 0.9051 31 1 1.6514 1.9652 -0.8740 32 1 3.4298 0.2761 -1.7876 33 1 3.8692 1.9823 -2.0402 34 1 5.9209 -0.1075 -4.3824 35 1 5.1288 2.7416 0.2750 36 1 3.5970 3.5384 -0.1576 37 1 2.0707 4.2084 1.5048 38 1 1.5389 4.5090 3.8870 39 1 1.6385 4.2996 7.3183 40 1 4.8289 1.9585 4.9225 41 1 6.5669 2.0257 2.3442 42 1 5.8152 0.6286 3.1513 43 1 5.4506 0.9720 1.4433 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238139262.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:27 Heat of formation + Delta-G solvation = -79.441994 kcal Electronic energy + Delta-G solvation = -23420.483983 eV Core-core repulsion = 20043.883159 eV Total energy + Delta-G solvation = -3376.600824 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.49322 -39.21668 -36.88439 -36.17591 -33.40478 -32.85397 -32.28739 -31.12108 -27.56903 -26.84232 -26.55384 -24.36820 -22.94687 -21.88749 -21.52745 -20.41860 -19.66155 -17.99919 -17.17636 -16.60412 -15.71312 -15.55673 -15.33485 -14.98614 -14.41685 -14.28701 -14.06168 -13.91724 -13.36439 -13.20991 -12.99031 -12.61898 -12.51949 -11.98197 -11.89275 -11.79670 -11.59825 -11.57458 -11.38944 -11.13953 -11.03083 -10.84666 -10.77391 -10.66744 -10.52409 -10.40190 -10.15069 -9.64294 -9.24872 -8.78769 -8.51433 -8.44771 -7.32058 -6.06695 -4.08168 0.74185 1.46521 2.53028 2.92497 3.28256 3.36664 3.39787 3.81631 4.39206 4.81055 4.85975 4.99395 5.04869 5.17183 5.30055 5.38581 5.46083 5.46471 5.55792 5.78000 5.86038 5.87920 5.95970 6.01153 6.07529 6.13338 6.16582 6.24316 6.29695 6.34321 6.35918 6.41661 6.46854 6.67426 6.70661 6.80952 6.90655 7.02462 7.21502 7.29417 7.78072 7.78847 8.05404 8.13608 8.47667 8.99300 9.56394 11.03961 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016562 B = 0.004370 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.212465 B = 6405.106482 C = 7518.005741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C 0.052 3.948 4 N -0.527 5.527 5 C 0.191 3.809 6 C -0.507 4.507 7 H 0.067 0.933 8 C 0.057 3.943 9 N -0.897 5.897 10 Si 0.893 3.107 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.286 1.286 14 C 0.090 3.910 15 C -0.025 4.025 16 C -0.131 4.131 17 C -0.071 4.071 18 C -0.140 4.140 19 C 0.530 3.470 20 O -0.520 6.520 21 O -0.514 6.514 22 C -0.058 4.058 23 C -0.067 4.067 24 C -0.131 4.131 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.023 0.977 32 H 0.039 0.961 33 H -0.012 1.012 34 H 0.260 0.740 35 H 0.098 0.902 36 H 0.032 0.968 37 H 0.127 0.873 38 H 0.132 0.868 39 H 0.411 0.589 40 H 0.133 0.867 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.747 6.761 13.345 16.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.076 4.076 4 N -0.251 5.251 5 C 0.066 3.934 6 C -0.546 4.546 7 H 0.085 0.915 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.721 3.279 11 H -0.195 1.195 12 H -0.211 1.211 13 H -0.212 1.212 14 C -0.038 4.038 15 C -0.025 4.025 16 C -0.150 4.150 17 C -0.089 4.089 18 C -0.142 4.142 19 C 0.375 3.625 20 O -0.410 6.410 21 O -0.326 6.326 22 C -0.077 4.077 23 C -0.068 4.068 24 C -0.187 4.187 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.042 0.958 32 H 0.057 0.943 33 H 0.006 0.994 34 H 0.070 0.930 35 H 0.116 0.884 36 H 0.050 0.950 37 H 0.145 0.855 38 H 0.150 0.850 39 H 0.269 0.731 40 H 0.151 0.849 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.288 6.151 13.256 16.330 hybrid contribution 0.465 0.448 0.028 0.646 sum -6.823 6.598 13.284 16.326 Atomic orbital electron populations 1.21738 0.96766 1.01030 1.01045 1.21462 0.93923 0.97194 1.02918 1.22125 0.89584 0.96594 0.99346 1.62140 1.05666 1.27504 1.29832 1.19814 0.96054 0.95591 0.81896 1.21229 0.94368 1.43566 0.95435 0.91517 1.24970 0.98314 0.95769 0.95407 1.69964 1.36333 1.47293 1.00083 0.86512 0.85102 0.78090 0.78156 1.19544 1.21065 1.21185 1.21097 1.02383 0.91691 0.88607 1.20340 0.92782 0.92719 0.96705 1.21086 0.98021 1.00227 0.95653 1.21285 0.98045 0.97237 0.92339 1.18893 1.00922 1.05570 0.88788 1.21045 0.76775 0.74680 0.89998 1.90872 1.49854 1.46835 1.53481 1.84578 1.49252 1.65234 1.33506 1.21146 0.94881 0.95551 0.96094 1.19792 0.97908 0.97575 0.91490 1.21084 0.94511 0.98076 1.05007 0.93099 0.93367 0.93179 0.91358 0.91820 0.92132 0.95831 0.94306 0.99405 0.92983 0.88369 0.95011 0.85539 0.85026 0.73120 0.84918 0.91545 0.92121 0.87134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 37.16 0.37 -1.60 16 2 C -0.12 -1.92 6.07 -26.73 -0.16 -2.09 16 3 C 0.05 0.89 4.84 -3.83 -0.02 0.87 16 4 N -0.53 -10.33 3.70 -237.52 -0.88 -11.21 16 5 C 0.19 4.61 4.55 -4.98 -0.02 4.59 16 6 C -0.51 -13.19 8.53 -34.44 -0.29 -13.48 16 7 H 0.07 1.68 5.54 -52.49 -0.29 1.38 16 8 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 9 N -0.90 -25.65 13.29 55.43 0.74 -24.92 16 10 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 11 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 14 C 0.09 1.58 4.06 -4.97 -0.02 1.56 16 15 C -0.02 -0.38 4.66 -104.53 -0.49 -0.86 16 16 C -0.13 -1.73 8.23 -39.64 -0.33 -2.05 16 17 C -0.07 -0.87 9.62 -39.17 -0.38 -1.24 16 18 C -0.14 -1.89 5.87 -104.99 -0.62 -2.50 16 19 C 0.53 6.75 8.27 34.61 0.29 7.04 16 20 O -0.52 -7.96 17.13 -19.25 -0.33 -8.28 16 21 O -0.51 -4.74 12.68 -40.53 -0.51 -5.25 16 22 C -0.06 -0.83 9.24 -39.17 -0.36 -1.20 16 23 C -0.07 -1.02 5.87 -104.68 -0.61 -1.63 16 24 C -0.13 -2.02 9.25 36.01 0.33 -1.68 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.07 1.27 6.71 -51.93 -0.35 0.92 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.06 0.95 5.76 -51.93 -0.30 0.65 16 31 H 0.02 0.41 8.00 -51.93 -0.42 0.00 16 32 H 0.04 1.02 6.51 -51.93 -0.34 0.68 16 33 H -0.01 -0.31 8.06 -51.93 -0.42 -0.73 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.10 1.86 6.11 -51.93 -0.32 1.55 16 36 H 0.03 0.54 7.97 -51.93 -0.41 0.13 16 37 H 0.13 1.46 8.03 -52.49 -0.42 1.04 16 38 H 0.13 1.33 7.61 -52.49 -0.40 0.94 16 39 H 0.41 1.85 9.11 45.56 0.42 2.26 16 40 H 0.13 1.82 7.65 -52.49 -0.40 1.42 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.06 0.85 8.08 -51.93 -0.42 0.43 16 43 H 0.11 2.03 4.48 -51.93 -0.23 1.80 16 LS Contribution 350.74 15.07 5.29 5.29 Total: -1.00 -30.02 350.74 -8.68 -38.70 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -5.55 Total: 2.77 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -2.41 Total: -12.85 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: -0.14 Total: -36.13 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -0.84 Total: -13.54 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.02 -8.68 -38.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238139262.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.743 kcal (2) G-P(sol) polarization free energy of solvation -30.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds