Wall clock time and date at job start Tue Mar 31 2020 06:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47224 * 2 1 4 4 N 1.46897 * 109.46945 * 181.74546 * 3 2 1 5 5 C 1.46894 * 111.00457 * 75.70335 * 4 3 2 6 6 C 1.50695 * 109.47330 * 195.59619 * 5 4 3 7 7 H 1.08000 * 119.99920 * 355.03477 * 6 5 4 8 8 C 1.37882 * 120.00345 * 175.03731 * 6 5 4 9 9 N 1.31518 * 119.99500 * 0.02562 * 8 6 5 10 10 Si 1.86790 * 120.00341 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47171 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.47058 * 119.99980 * 10 8 6 13 13 H 1.48506 * 109.47582 * 239.99966 * 10 8 6 14 14 C 1.46906 * 110.99912 * 199.65909 * 4 3 2 15 15 C 1.50704 * 109.47032 * 66.04158 * 14 4 3 16 16 C 1.38386 * 119.84692 * 259.72821 * 15 14 4 17 17 C 1.37930 * 120.14549 * 179.72518 * 16 15 14 18 18 C 1.39642 * 119.84699 * 0.56978 * 17 16 15 19 19 C 1.47722 * 120.14845 * 179.72421 * 18 17 16 20 20 O 1.21481 * 120.00203 * 179.97438 * 19 18 17 21 21 O 1.34713 * 120.00063 * 359.97438 * 19 18 17 22 22 C 1.39613 * 119.70546 * 359.70468 * 18 17 16 23 23 C 1.37967 * 119.84004 * 359.97438 * 22 18 17 24 24 C 1.50706 * 119.92030 * 179.97438 * 23 22 18 25 25 H 1.08998 * 109.47066 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46629 * 299.99956 * 1 2 3 27 27 H 1.08997 * 109.47278 * 59.99771 * 1 2 3 28 28 H 1.09000 * 109.46582 * 239.99499 * 2 1 3 29 29 H 1.09001 * 109.46711 * 119.99767 * 2 1 3 30 30 H 1.08997 * 109.47588 * 61.74185 * 3 2 1 31 31 H 1.09003 * 109.46690 * 301.74063 * 3 2 1 32 32 H 1.08998 * 109.47318 * 315.59715 * 5 4 3 33 33 H 1.09001 * 109.47189 * 75.59129 * 5 4 3 34 34 H 0.97000 * 119.99539 * 180.02562 * 9 8 6 35 35 H 1.08996 * 109.47056 * 186.04659 * 14 4 3 36 36 H 1.09002 * 109.46651 * 306.04587 * 14 4 3 37 37 H 1.07996 * 119.92879 * 0.02562 * 16 15 14 38 38 H 1.08002 * 120.07267 * 180.27276 * 17 16 15 39 39 H 0.96705 * 116.99878 * 179.97438 * 21 19 18 40 40 H 1.07991 * 120.08121 * 180.02562 * 22 18 17 41 41 H 1.08994 * 109.47120 * 270.02124 * 24 23 22 42 42 H 1.09004 * 109.46996 * 30.02164 * 24 23 22 43 43 H 1.08997 * 109.46964 * 150.02122 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5084 1.4426 -0.0422 5 6 3.9965 1.1175 -1.3890 6 6 5.4567 0.7517 -1.3194 7 1 5.9908 0.8369 -0.3846 8 6 6.1110 0.3082 -2.4492 9 7 5.4607 0.2049 -3.5877 10 14 7.9211 -0.1446 -2.3631 11 1 8.4170 0.0589 -0.9782 12 1 8.0938 -1.5691 -2.7459 13 1 8.6917 0.7157 -3.2967 14 6 4.0482 2.7294 0.4170 15 6 3.7314 2.9142 1.8787 16 6 2.6695 3.7169 2.2572 17 6 2.3706 3.8858 3.5931 18 6 3.1495 3.2541 4.5648 19 6 2.8390 3.4352 5.9976 20 8 3.5181 2.8840 6.8407 21 8 1.8028 4.2116 6.3694 22 6 4.2228 2.4502 4.1761 23 6 4.5065 2.2847 2.8361 24 6 5.6650 1.4178 2.4146 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.7025 1.9473 0.9051 31 1 1.6514 1.9652 -0.8740 32 1 3.4298 0.2761 -1.7876 33 1 3.8692 1.9823 -2.0402 34 1 5.9209 -0.1075 -4.3824 35 1 5.1288 2.7416 0.2750 36 1 3.5970 3.5384 -0.1576 37 1 2.0707 4.2084 1.5048 38 1 1.5389 4.5090 3.8870 39 1 1.6385 4.2996 7.3183 40 1 4.8289 1.9585 4.9225 41 1 6.5669 2.0257 2.3442 42 1 5.8152 0.6286 3.1513 43 1 5.4506 0.9720 1.4433 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238139262.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:26 Heat of formation + Delta-G solvation = -96.963573 kcal Electronic energy + Delta-G solvation = -23421.243775 eV Core-core repulsion = 20043.883159 eV Total energy + Delta-G solvation = -3377.360617 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.49887 -40.34288 -38.32608 -37.07521 -34.93362 -34.45589 -33.52530 -32.45154 -29.29263 -28.16110 -27.73704 -25.82837 -24.41616 -23.02022 -22.88391 -21.58476 -21.05835 -18.93191 -18.60205 -18.13430 -16.99571 -16.66199 -16.58418 -16.51426 -16.03926 -15.44016 -15.40515 -15.21698 -14.64808 -14.37385 -14.25944 -14.01452 -13.77366 -13.56734 -13.32391 -13.01610 -12.94183 -12.86395 -12.64947 -12.55531 -12.54085 -12.37422 -12.22007 -12.00302 -11.84356 -11.75604 -11.57618 -11.23324 -11.17234 -10.55547 -9.90106 -9.61831 -8.95368 -8.14881 -6.22793 -0.32797 0.40422 1.42601 1.44756 1.50678 1.56501 2.06954 2.43555 2.72396 3.18100 3.42591 3.75443 3.86523 3.98198 4.12023 4.14175 4.25306 4.31981 4.37101 4.56726 4.61543 4.71773 4.76498 4.79582 4.81849 4.89108 4.97940 5.00162 5.03853 5.18392 5.21041 5.25451 5.31941 5.34572 5.39422 5.48270 5.51142 5.56943 5.71830 5.81763 5.91041 6.13851 6.40512 6.67395 6.94275 6.98030 7.46402 8.96222 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016562 B = 0.004370 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.212465 B = 6405.106482 C = 7518.005741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.115 4.115 3 C 0.053 3.947 4 N -0.530 5.530 5 C 0.208 3.792 6 C -0.513 4.513 7 H 0.073 0.927 8 C 0.003 3.997 9 N -0.936 5.936 10 Si 0.958 3.042 11 H -0.259 1.259 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.095 3.905 15 C -0.038 4.038 16 C -0.127 4.127 17 C -0.056 4.056 18 C -0.145 4.145 19 C 0.538 3.462 20 O -0.551 6.551 21 O -0.501 6.501 22 C -0.064 4.064 23 C -0.077 4.077 24 C -0.126 4.126 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.036 0.964 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.018 0.982 32 H 0.011 0.989 33 H -0.040 1.040 34 H 0.261 0.739 35 H 0.077 0.923 36 H 0.035 0.965 37 H 0.146 0.854 38 H 0.162 0.838 39 H 0.433 0.567 40 H 0.134 0.866 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.780 7.876 15.548 19.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.153 4.153 3 C -0.074 4.074 4 N -0.254 5.254 5 C 0.082 3.918 6 C -0.551 4.551 7 H 0.091 0.909 8 C -0.195 4.195 9 N -0.577 5.577 10 Si 0.784 3.216 11 H -0.183 1.183 12 H -0.210 1.210 13 H -0.209 1.209 14 C -0.032 4.032 15 C -0.039 4.039 16 C -0.145 4.145 17 C -0.074 4.074 18 C -0.146 4.146 19 C 0.384 3.616 20 O -0.443 6.443 21 O -0.315 6.315 22 C -0.082 4.082 23 C -0.078 4.078 24 C -0.183 4.183 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.036 0.964 32 H 0.029 0.971 33 H -0.023 1.023 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.164 0.836 38 H 0.179 0.821 39 H 0.295 0.705 40 H 0.152 0.848 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.346 7.290 15.497 19.051 hybrid contribution 0.694 0.172 -0.566 0.912 sum -7.652 7.462 14.931 18.362 Atomic orbital electron populations 1.21672 0.93845 1.02171 1.02061 1.21429 0.96462 0.96284 1.01088 1.22203 0.87852 0.97282 1.00110 1.62047 1.07403 1.29238 1.26665 1.19422 0.95241 0.93301 0.83806 1.21595 0.95359 1.42595 0.95584 0.90928 1.25813 1.02653 0.95893 0.95092 1.70092 1.38152 1.48637 1.00817 0.85488 0.79931 0.77550 0.78626 1.18278 1.20994 1.20877 1.20973 1.01062 0.90571 0.90597 1.20133 0.94399 0.94530 0.94848 1.21263 0.97159 0.99350 0.96732 1.21538 0.98083 0.96422 0.91384 1.19085 1.00589 1.05100 0.89818 1.20850 0.76957 0.74455 0.89346 1.90873 1.51116 1.48222 1.54136 1.84513 1.47410 1.63760 1.35768 1.21147 0.95496 0.96022 0.95508 1.19751 0.97994 0.97994 0.92056 1.20976 0.95229 0.98559 1.03520 0.91984 0.91501 0.92922 0.94513 0.92287 0.89773 0.96367 0.97094 1.02275 0.92991 0.90465 0.94674 0.83633 0.82088 0.70459 0.84832 0.91001 0.91065 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.91 71.98 0.71 -2.77 16 2 C -0.11 -3.78 6.07 30.60 0.19 -3.59 16 3 C 0.05 1.82 4.84 86.30 0.42 2.24 16 4 N -0.53 -21.29 3.70 -905.39 -3.35 -24.64 16 5 C 0.21 10.56 4.55 85.56 0.39 10.95 16 6 C -0.51 -27.55 8.53 25.60 0.22 -27.33 16 7 H 0.07 3.75 5.54 -2.91 -0.02 3.73 16 8 C 0.00 0.17 5.46 84.66 0.46 0.64 16 9 N -0.94 -55.28 13.29 21.45 0.28 -55.00 16 10 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 11 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 14 C 0.10 3.39 4.06 85.56 0.35 3.74 16 15 C -0.04 -1.13 4.66 -19.80 -0.09 -1.22 16 16 C -0.13 -2.97 8.23 22.23 0.18 -2.78 16 17 C -0.06 -1.17 9.62 22.54 0.22 -0.95 16 18 C -0.14 -3.48 5.87 -20.10 -0.12 -3.60 16 19 C 0.54 12.13 8.27 70.33 0.58 12.71 16 20 O -0.55 -15.74 17.13 19.90 0.34 -15.40 16 21 O -0.50 -7.21 12.68 -56.23 -0.71 -7.92 16 22 C -0.06 -1.72 9.24 22.54 0.21 -1.51 16 23 C -0.08 -2.29 5.87 -19.90 -0.12 -2.41 16 24 C -0.13 -3.92 9.25 71.24 0.66 -3.26 16 25 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.04 1.42 6.71 -2.39 -0.02 1.41 16 29 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.08 2.47 5.76 -2.39 -0.01 2.46 16 31 H 0.02 0.64 8.00 -2.39 -0.02 0.62 16 32 H 0.01 0.61 6.51 -2.39 -0.02 0.60 16 33 H -0.04 -2.23 8.06 -2.39 -0.02 -2.25 16 34 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 35 H 0.08 3.03 6.11 -2.39 -0.01 3.02 16 36 H 0.04 1.20 7.97 -2.39 -0.02 1.19 16 37 H 0.15 2.85 8.03 -2.91 -0.02 2.83 16 38 H 0.16 2.42 7.61 -2.91 -0.02 2.40 16 39 H 0.43 2.17 9.11 -74.05 -0.67 1.49 16 40 H 0.13 3.54 7.65 -2.92 -0.02 3.52 16 41 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.07 1.98 8.08 -2.38 -0.02 1.96 16 43 H 0.08 2.99 4.48 -2.39 -0.01 2.98 16 Total: -1.00 -66.39 350.74 3.19 -63.20 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.35 Total: 13.58 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: 4.26 Total: -19.16 kcal Atomic # 7 Polarization: -76.57 SS G_CDS: -3.07 Total: -79.64 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.37 Total: -23.32 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -66.39 3.19 -63.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238139262.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.765 kcal (2) G-P(sol) polarization free energy of solvation -66.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds