Wall clock time and date at job start Tue Mar 31 2020 06:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47101 * 2 1 4 4 N 1.46497 * 109.46983 * 120.00189 * 2 1 3 5 5 C 1.34780 * 119.99566 * 155.00136 * 4 2 1 6 6 O 1.21280 * 120.00423 * 359.97438 * 5 4 2 7 7 C 1.50701 * 119.99795 * 180.02562 * 5 4 2 8 8 O 1.42903 * 109.46878 * 179.97438 * 7 5 4 9 9 C 1.35904 * 116.99628 * 179.97438 * 8 7 5 10 10 C 1.38758 * 120.05922 * 359.72826 * 9 8 7 11 11 C 1.38121 * 119.94303 * 179.69478 * 10 9 8 12 12 C 1.38284 * 120.05670 * 0.60266 * 11 10 9 13 13 C 1.38245 * 120.11162 * 359.67148 * 12 11 10 14 14 C 1.50704 * 119.97222 * 179.97438 * 13 12 11 15 15 C 1.52989 * 109.47377 * 270.02397 * 14 13 12 16 16 C 1.50700 * 109.47162 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99922 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00085 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00201 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99992 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47240 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.46950 * 120.00277 * 20 18 16 23 23 H 1.48504 * 109.46741 * 240.00257 * 20 18 16 24 24 C 1.38173 * 120.05607 * 0.02881 * 13 12 11 25 25 H 1.09006 * 109.47080 * 299.99870 * 1 2 3 26 26 H 1.09001 * 109.47336 * 59.99311 * 1 2 3 27 27 H 1.08999 * 109.47583 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46683 * 240.00482 * 2 1 3 29 29 H 1.08993 * 109.47354 * 60.00033 * 3 2 1 30 30 H 1.09000 * 109.46920 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47178 * 300.00239 * 3 2 1 32 32 H 0.96995 * 120.00423 * 334.99441 * 4 2 1 33 33 H 1.09002 * 109.47060 * 299.99722 * 7 5 4 34 34 H 1.09001 * 109.47380 * 59.99809 * 7 5 4 35 35 H 1.08003 * 120.02200 * 359.97438 * 10 9 8 36 36 H 1.07998 * 119.96674 * 180.29445 * 11 10 9 37 37 H 1.08003 * 119.94493 * 179.69558 * 12 11 10 38 38 H 1.09002 * 109.46581 * 30.02752 * 14 13 12 39 39 H 1.08999 * 109.46711 * 150.02339 * 14 13 12 40 40 H 1.08995 * 109.47307 * 300.00059 * 15 14 13 41 41 H 1.08999 * 109.47248 * 60.00271 * 15 14 13 42 42 H 0.96993 * 119.99720 * 179.97438 * 19 18 16 43 43 H 1.07998 * 120.02728 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 3.2403 -1.2592 1.1943 6 8 3.9355 -1.1994 0.2023 7 6 3.7425 -1.9701 2.4245 8 8 5.0523 -2.4846 2.1760 9 6 5.6535 -3.1581 3.1918 10 6 4.9986 -3.3156 4.4049 11 6 5.6093 -4.0059 5.4336 12 6 6.8774 -4.5292 5.2596 13 6 7.5344 -4.3688 4.0538 14 6 8.9166 -4.9398 3.8678 15 6 9.9585 -3.8991 4.2824 16 6 11.3406 -4.4704 4.0969 17 1 11.4635 -5.4752 3.7205 18 6 12.4482 -3.7100 4.4067 19 7 12.2986 -2.4862 4.8647 20 14 14.1614 -4.4179 4.1761 21 1 14.0581 -5.8037 3.6525 22 1 14.9180 -3.5791 3.2122 23 1 14.8701 -4.4339 5.4811 24 6 6.9253 -3.6843 3.0195 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.4623 -0.7387 1.9894 33 1 3.7790 -1.2701 3.2592 34 1 3.0699 -2.7923 2.6690 35 1 4.0102 -2.9026 4.5430 36 1 5.0979 -4.1328 6.3764 37 1 7.3552 -5.0644 6.0668 38 1 9.0275 -5.8311 4.4853 39 1 9.0629 -5.2030 2.8202 40 1 9.8475 -3.0078 3.6649 41 1 9.8122 -3.6358 5.3299 42 1 13.0778 -1.9514 5.0830 43 1 7.4388 -3.5596 2.0777 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060171.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:08 Heat of formation + Delta-G solvation = -70.566288 kcal Electronic energy + Delta-G solvation = -21971.730908 eV Core-core repulsion = 18595.514963 eV Total energy + Delta-G solvation = -3376.215944 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.46908 -39.52338 -37.47555 -36.18933 -33.87193 -32.24615 -31.97925 -30.32142 -28.73940 -27.97850 -27.65576 -25.04589 -22.52061 -22.24575 -21.54286 -20.86833 -19.99687 -17.97338 -17.15443 -16.62913 -16.38405 -16.18613 -15.68031 -15.44675 -14.94278 -14.45492 -14.27588 -14.13708 -13.89497 -13.34041 -12.98572 -12.79625 -12.76862 -12.63485 -12.47645 -12.31716 -12.10025 -11.81674 -11.41366 -11.38754 -11.20985 -10.96735 -10.88367 -10.61478 -10.43641 -10.04061 -9.80855 -9.59687 -9.50257 -9.06348 -8.33395 -8.28636 -7.89294 -5.96738 -3.99686 1.69654 1.77470 2.30793 2.36277 3.33816 3.41100 3.45329 3.53989 4.12147 4.27891 4.48648 4.49260 4.59942 4.72406 4.80209 4.83390 5.08279 5.11915 5.13320 5.24421 5.34938 5.38913 5.48544 5.50878 5.65679 5.71385 5.78517 5.86871 5.93249 6.10408 6.23775 6.47800 6.54394 6.67494 6.73662 6.93723 7.05406 7.12775 7.19375 7.59320 7.71489 7.85128 7.89791 8.03321 8.43377 9.07508 9.64227 11.14404 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023516 B = 0.002516 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.402145 B =11126.234386 C =11900.098119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.137 3.863 3 C -0.166 4.166 4 N -0.728 5.728 5 C 0.516 3.484 6 O -0.511 6.511 7 C 0.043 3.957 8 O -0.292 6.292 9 C 0.123 3.877 10 C -0.229 4.229 11 C -0.082 4.082 12 C -0.154 4.154 13 C -0.016 4.016 14 C -0.082 4.082 15 C 0.029 3.971 16 C -0.521 4.521 17 H 0.057 0.943 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.892 3.108 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.146 4.146 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.400 0.600 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.019 0.981 41 H 0.018 0.982 42 H 0.260 0.740 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.118 3.824 -3.835 27.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.033 3.967 3 C -0.224 4.224 4 N -0.383 5.383 5 C 0.301 3.699 6 O -0.384 6.384 7 C -0.036 4.036 8 O -0.205 6.205 9 C 0.078 3.922 10 C -0.248 4.248 11 C -0.100 4.100 12 C -0.172 4.172 13 C -0.016 4.016 14 C -0.119 4.119 15 C -0.008 4.008 16 C -0.559 4.559 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.720 3.280 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.211 1.211 24 C -0.164 4.164 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.107 0.893 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.234 0.766 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.070 0.930 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -26.416 4.055 -4.723 27.140 hybrid contribution 0.489 -0.140 0.611 0.795 sum -25.927 3.915 -4.111 26.542 Atomic orbital electron populations 1.22080 0.93915 1.02712 1.03066 1.20962 0.93976 0.93123 0.88603 1.22206 1.02481 0.95576 1.02162 1.45951 1.17542 1.57554 1.17208 1.20187 0.81607 0.78900 0.89239 1.90772 1.55436 1.57829 1.34393 1.22355 0.85659 0.99067 0.96522 1.86152 1.28579 1.68605 1.37136 1.18977 0.92944 0.93539 0.86697 1.21000 1.01420 1.08119 0.94222 1.20829 0.95071 0.96382 0.97747 1.21036 0.95113 1.03318 0.97761 1.20209 0.96105 0.93355 0.91967 1.20892 0.89610 0.99872 1.01523 1.19082 0.91528 0.93255 0.96914 1.21289 0.91011 1.00206 1.43415 0.92479 1.25035 0.99294 0.94885 0.95293 1.69986 1.29867 1.08834 1.44647 0.86531 0.84502 0.79213 0.77729 1.19701 1.21009 1.21054 1.20375 0.92764 1.02152 1.01136 0.91982 0.90763 0.91893 0.89252 0.92397 0.91824 0.91493 0.76556 0.89108 0.89211 0.86319 0.86265 0.85890 0.91852 0.91911 0.96280 0.96348 0.93049 0.85160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.65 9.38 37.16 0.35 -0.30 16 2 C 0.14 0.96 3.18 -67.93 -0.22 0.74 16 3 C -0.17 -1.18 9.48 37.16 0.35 -0.82 16 4 N -0.73 -5.24 5.08 -53.80 -0.27 -5.51 16 5 C 0.52 5.89 7.87 -10.98 -0.09 5.81 16 6 O -0.51 -8.42 16.16 -14.35 -0.23 -8.65 16 7 C 0.04 0.45 5.22 36.01 0.19 0.64 16 8 O -0.29 -4.63 9.67 -39.35 -0.38 -5.01 16 9 C 0.12 2.01 6.69 -39.22 -0.26 1.75 16 10 C -0.23 -3.14 9.04 -39.43 -0.36 -3.50 16 11 C -0.08 -1.16 10.04 -39.61 -0.40 -1.56 16 12 C -0.15 -2.58 9.70 -39.56 -0.38 -2.96 16 13 C -0.02 -0.31 5.13 -104.64 -0.54 -0.84 16 14 C -0.08 -1.73 5.28 -27.89 -0.15 -1.88 16 15 C 0.03 0.77 4.95 -27.89 -0.14 0.63 16 16 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 17 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -27.41 13.29 55.43 0.74 -26.68 16 20 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 C -0.15 -2.70 9.64 -39.43 -0.38 -3.08 16 25 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.09 0.81 7.58 -51.93 -0.39 0.41 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.40 1.53 8.60 -40.82 -0.35 1.18 16 33 H 0.09 0.75 7.65 -51.93 -0.40 0.35 16 34 H 0.09 0.69 7.68 -51.93 -0.40 0.29 16 35 H 0.12 1.19 6.30 -52.48 -0.33 0.86 16 36 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.12 1.93 8.06 -52.48 -0.42 1.50 16 38 H 0.06 1.27 8.09 -51.93 -0.42 0.85 16 39 H 0.06 1.30 8.08 -51.93 -0.42 0.88 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.13 2.46 8.06 -52.49 -0.42 2.03 16 LS Contribution 364.57 15.07 5.49 5.49 Total: -1.00 -35.39 364.57 -9.01 -44.40 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -6.90 Total: -1.89 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: -2.43 Total: -19.10 kcal Atomic # 7 Polarization: -32.65 SS G_CDS: 0.46 Total: -32.19 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.61 Total: -13.66 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.39 -9.01 -44.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060171.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.170 kcal (2) G-P(sol) polarization free energy of solvation -35.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds