Wall clock time and date at job start Tue Mar 31 2020 06:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47101 * 2 1 4 4 N 1.46497 * 109.46983 * 120.00189 * 2 1 3 5 5 C 1.34780 * 119.99566 * 155.00136 * 4 2 1 6 6 O 1.21280 * 120.00423 * 359.97438 * 5 4 2 7 7 C 1.50701 * 119.99795 * 180.02562 * 5 4 2 8 8 O 1.42903 * 109.46878 * 179.97438 * 7 5 4 9 9 C 1.35904 * 116.99628 * 179.97438 * 8 7 5 10 10 C 1.38758 * 120.05922 * 359.72826 * 9 8 7 11 11 C 1.38121 * 119.94303 * 179.69478 * 10 9 8 12 12 C 1.38284 * 120.05670 * 0.60266 * 11 10 9 13 13 C 1.38245 * 120.11162 * 359.67148 * 12 11 10 14 14 C 1.50704 * 119.97222 * 179.97438 * 13 12 11 15 15 C 1.52989 * 109.47377 * 270.02397 * 14 13 12 16 16 C 1.50700 * 109.47162 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99922 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00085 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00201 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99992 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47240 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.46950 * 120.00277 * 20 18 16 23 23 H 1.48504 * 109.46741 * 240.00257 * 20 18 16 24 24 C 1.38173 * 120.05607 * 0.02881 * 13 12 11 25 25 H 1.09006 * 109.47080 * 299.99870 * 1 2 3 26 26 H 1.09001 * 109.47336 * 59.99311 * 1 2 3 27 27 H 1.08999 * 109.47583 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46683 * 240.00482 * 2 1 3 29 29 H 1.08993 * 109.47354 * 60.00033 * 3 2 1 30 30 H 1.09000 * 109.46920 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47178 * 300.00239 * 3 2 1 32 32 H 0.96995 * 120.00423 * 334.99441 * 4 2 1 33 33 H 1.09002 * 109.47060 * 299.99722 * 7 5 4 34 34 H 1.09001 * 109.47380 * 59.99809 * 7 5 4 35 35 H 1.08003 * 120.02200 * 359.97438 * 10 9 8 36 36 H 1.07998 * 119.96674 * 180.29445 * 11 10 9 37 37 H 1.08003 * 119.94493 * 179.69558 * 12 11 10 38 38 H 1.09002 * 109.46581 * 30.02752 * 14 13 12 39 39 H 1.08999 * 109.46711 * 150.02339 * 14 13 12 40 40 H 1.08995 * 109.47307 * 300.00059 * 15 14 13 41 41 H 1.08999 * 109.47248 * 60.00271 * 15 14 13 42 42 H 0.96993 * 119.99720 * 179.97438 * 19 18 16 43 43 H 1.07998 * 120.02728 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 3.2403 -1.2592 1.1943 6 8 3.9355 -1.1994 0.2023 7 6 3.7425 -1.9701 2.4245 8 8 5.0523 -2.4846 2.1760 9 6 5.6535 -3.1581 3.1918 10 6 4.9986 -3.3156 4.4049 11 6 5.6093 -4.0059 5.4336 12 6 6.8774 -4.5292 5.2596 13 6 7.5344 -4.3688 4.0538 14 6 8.9166 -4.9398 3.8678 15 6 9.9585 -3.8991 4.2824 16 6 11.3406 -4.4704 4.0969 17 1 11.4635 -5.4752 3.7205 18 6 12.4482 -3.7100 4.4067 19 7 12.2986 -2.4862 4.8647 20 14 14.1614 -4.4179 4.1761 21 1 14.0581 -5.8037 3.6525 22 1 14.9180 -3.5791 3.2122 23 1 14.8701 -4.4339 5.4811 24 6 6.9253 -3.6843 3.0195 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.4623 -0.7387 1.9894 33 1 3.7790 -1.2701 3.2592 34 1 3.0699 -2.7923 2.6690 35 1 4.0102 -2.9026 4.5430 36 1 5.0979 -4.1328 6.3764 37 1 7.3552 -5.0644 6.0668 38 1 9.0275 -5.8311 4.4853 39 1 9.0629 -5.2030 2.8202 40 1 9.8475 -3.0078 3.6649 41 1 9.8122 -3.6358 5.3299 42 1 13.0778 -1.9514 5.0830 43 1 7.4388 -3.5596 2.0777 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060171.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:07 Heat of formation + Delta-G solvation = -92.926177 kcal Electronic energy + Delta-G solvation = -21972.700505 eV Core-core repulsion = 18595.514963 eV Total energy + Delta-G solvation = -3377.185542 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.48154 -40.56414 -38.66948 -36.97509 -35.79266 -33.82536 -32.99342 -31.50320 -30.40570 -28.89698 -28.11285 -26.94662 -23.92192 -23.41508 -22.76118 -21.72441 -21.31765 -19.06954 -18.51346 -18.04379 -17.46930 -17.28847 -16.82692 -16.53516 -16.51980 -15.72237 -15.34975 -15.06680 -15.02141 -14.54780 -14.33129 -14.16269 -13.96487 -13.73384 -13.56720 -13.21790 -13.08739 -13.02665 -12.85858 -12.63931 -12.38525 -12.32468 -12.11342 -11.94531 -11.88696 -11.72804 -11.51341 -11.16106 -10.97711 -10.57985 -10.22817 -9.67018 -9.12787 -8.20944 -6.33264 0.43478 0.52340 1.39207 1.40280 1.44931 1.53705 1.54138 2.40161 2.64728 2.85776 3.11678 3.57741 3.89627 3.94484 3.99970 4.05943 4.06991 4.16736 4.23740 4.29955 4.38205 4.50623 4.57803 4.70840 4.74301 4.83719 4.84925 4.92550 4.99701 5.00550 5.21108 5.25232 5.31299 5.33299 5.46652 5.47667 5.49918 5.58201 5.80824 5.82273 5.91891 6.21179 6.36919 6.53098 6.83598 7.15588 7.36087 8.91092 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023516 B = 0.002516 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.402145 B =11126.234386 C =11900.098119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.132 3.868 3 C -0.163 4.163 4 N -0.704 5.704 5 C 0.512 3.488 6 O -0.575 6.575 7 C 0.035 3.965 8 O -0.324 6.324 9 C 0.120 3.880 10 C -0.211 4.211 11 C -0.071 4.071 12 C -0.168 4.168 13 C -0.042 4.042 14 C -0.068 4.068 15 C 0.038 3.962 16 C -0.544 4.544 17 H 0.064 0.936 18 C -0.003 4.003 19 N -0.934 5.934 20 Si 0.969 3.031 21 H -0.260 1.260 22 H -0.280 1.280 23 H -0.275 1.275 24 C -0.177 4.177 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.028 0.972 31 H 0.079 0.921 32 H 0.421 0.579 33 H 0.122 0.878 34 H 0.129 0.871 35 H 0.169 0.831 36 H 0.163 0.837 37 H 0.129 0.871 38 H 0.073 0.927 39 H 0.057 0.943 40 H -0.017 1.017 41 H -0.005 1.005 42 H 0.264 0.736 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.926 3.504 -2.194 30.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.028 3.972 3 C -0.221 4.221 4 N -0.360 5.360 5 C 0.298 3.702 6 O -0.454 6.454 7 C -0.043 4.043 8 O -0.238 6.238 9 C 0.075 3.925 10 C -0.230 4.230 11 C -0.088 4.088 12 C -0.186 4.186 13 C -0.042 4.042 14 C -0.106 4.106 15 C 0.001 3.999 16 C -0.581 4.581 17 H 0.082 0.918 18 C -0.201 4.201 19 N -0.575 5.575 20 Si 0.793 3.207 21 H -0.184 1.184 22 H -0.205 1.205 23 H -0.201 1.201 24 C -0.196 4.196 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.047 0.953 31 H 0.098 0.902 32 H 0.259 0.741 33 H 0.140 0.860 34 H 0.146 0.854 35 H 0.186 0.814 36 H 0.181 0.819 37 H 0.147 0.853 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.001 0.999 41 H 0.013 0.987 42 H 0.073 0.927 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -29.294 3.737 -3.053 29.689 hybrid contribution 1.197 0.056 0.083 1.201 sum -28.097 3.792 -2.970 28.507 Atomic orbital electron populations 1.22020 0.90905 1.03421 1.04423 1.21063 0.96156 0.92520 0.87490 1.22180 1.00202 0.96051 1.03666 1.45821 1.16258 1.55749 1.18124 1.20553 0.82180 0.78670 0.88824 1.90754 1.57446 1.60514 1.36677 1.22776 0.83898 1.00854 0.96741 1.86111 1.31255 1.68688 1.37728 1.19000 0.92283 0.93250 0.87944 1.21505 1.02902 1.06270 0.92278 1.21300 0.93707 0.94406 0.99437 1.21234 0.96587 1.03997 0.96773 1.19982 0.95306 0.95295 0.93619 1.20607 0.90159 0.98659 1.01157 1.18896 0.92936 0.93405 0.94698 1.21738 0.92280 1.00682 1.43442 0.91806 1.26049 1.04151 0.95176 0.94713 1.70126 1.31393 1.10361 1.45574 0.85338 0.78502 0.78840 0.77994 1.18383 1.20530 1.20065 1.20331 0.94663 1.04125 1.00474 0.90134 0.89908 0.91499 0.91997 0.90725 0.95270 0.90210 0.74082 0.86038 0.85386 0.81375 0.81947 0.85289 0.90856 0.92399 0.99853 0.98664 0.92741 0.87584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.38 71.98 0.68 -0.13 16 2 C 0.13 1.70 3.18 44.99 0.14 1.85 16 3 C -0.16 -2.20 9.48 71.98 0.68 -1.52 16 4 N -0.70 -8.78 5.08 -442.53 -2.25 -11.03 16 5 C 0.51 11.33 7.87 87.66 0.69 12.02 16 6 O -0.58 -19.92 16.16 16.01 0.26 -19.66 16 7 C 0.03 0.64 5.22 71.24 0.37 1.01 16 8 O -0.32 -10.21 9.67 -73.43 -0.71 -10.92 16 9 C 0.12 3.84 6.69 22.51 0.15 3.99 16 10 C -0.21 -4.99 9.04 22.37 0.20 -4.79 16 11 C -0.07 -1.74 10.04 22.25 0.22 -1.52 16 12 C -0.17 -5.46 9.70 22.28 0.22 -5.25 16 13 C -0.04 -1.65 5.13 -19.88 -0.10 -1.75 16 14 C -0.07 -3.06 5.28 29.85 0.16 -2.91 16 15 C 0.04 2.12 4.95 29.84 0.15 2.26 16 16 C -0.54 -32.21 9.11 25.60 0.23 -31.97 16 17 H 0.06 3.60 7.74 -2.91 -0.02 3.58 16 18 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 19 N -0.93 -59.02 13.29 21.45 0.28 -58.74 16 20 Si 0.97 45.65 29.54 68.60 2.03 47.68 16 21 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 C -0.18 -6.93 9.64 22.37 0.22 -6.71 16 25 H 0.08 0.17 8.14 -2.38 -0.02 0.15 16 26 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.06 1.17 7.58 -2.38 -0.02 1.15 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.42 1.68 8.60 -92.71 -0.80 0.88 16 33 H 0.12 1.48 7.65 -2.39 -0.02 1.46 16 34 H 0.13 1.36 7.68 -2.39 -0.02 1.34 16 35 H 0.17 2.25 6.30 -2.91 -0.02 2.23 16 36 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 37 H 0.13 3.94 8.06 -2.91 -0.02 3.91 16 38 H 0.07 3.05 8.09 -2.39 -0.02 3.03 16 39 H 0.06 2.56 8.08 -2.39 -0.02 2.54 16 40 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 41 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 42 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 43 H 0.11 4.47 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -83.49 364.57 4.28 -79.22 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 0.19 Total: 8.59 kcal Atomic # 6 Polarization: -39.60 SS G_CDS: 4.47 Total: -35.13 kcal Atomic # 7 Polarization: -67.80 SS G_CDS: -1.96 Total: -69.77 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.45 Total: -30.58 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -83.49 4.28 -79.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060171.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.710 kcal (2) G-P(sol) polarization free energy of solvation -83.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds