Wall clock time and date at job start Tue Mar 31 2020 06:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47265 * 2 1 4 4 H 1.08999 * 109.46554 * 303.58030 * 3 2 1 5 5 C 1.50697 * 109.47180 * 183.57879 * 3 2 1 6 6 H 1.08005 * 119.99966 * 245.43668 * 5 3 2 7 7 C 1.37879 * 119.99938 * 65.43631 * 5 3 2 8 8 N 1.31518 * 120.00002 * 196.16410 * 7 5 3 9 9 Si 1.86799 * 120.00072 * 16.16052 * 7 5 3 10 10 H 1.48505 * 109.47010 * 87.24529 * 9 7 5 11 11 H 1.48498 * 109.47064 * 207.24331 * 9 7 5 12 12 H 1.48496 * 109.47322 * 327.24921 * 9 7 5 13 13 N 1.46899 * 109.46744 * 63.57737 * 3 2 1 14 14 C 1.46901 * 110.99736 * 261.94415 * 13 3 2 15 15 H 1.08994 * 109.47014 * 26.52120 * 14 13 3 16 16 C 1.53006 * 109.47184 * 266.51413 * 14 13 3 17 17 C 1.50702 * 109.46592 * 146.52081 * 14 13 3 18 18 C 1.38368 * 119.84672 * 219.99790 * 17 14 13 19 19 C 1.37946 * 120.15267 * 179.97438 * 18 17 14 20 20 C 1.39627 * 119.84470 * 0.02562 * 19 18 17 21 21 C 1.47725 * 120.14400 * 179.97438 * 20 19 18 22 22 O 1.21470 * 120.00487 * 0.02562 * 21 20 19 23 23 O 1.34720 * 119.99413 * 179.72420 * 21 20 19 24 24 C 1.45203 * 116.99582 * 180.27893 * 23 21 20 25 25 C 1.39625 * 119.70127 * 0.27830 * 20 19 18 26 26 C 1.37940 * 119.84842 * 359.42044 * 25 20 19 27 27 H 1.09004 * 109.47036 * 57.98768 * 1 2 3 28 28 H 1.09002 * 109.47103 * 177.98289 * 1 2 3 29 29 H 1.09004 * 109.46957 * 297.98698 * 1 2 3 30 30 H 1.08992 * 109.47396 * 239.99734 * 2 1 3 31 31 H 1.09002 * 109.47080 * 119.99796 * 2 1 3 32 32 H 0.97001 * 120.00291 * 180.02562 * 8 7 5 33 33 H 1.00905 * 110.99440 * 137.99521 * 13 3 2 34 34 H 1.09000 * 109.47326 * 300.00147 * 16 14 13 35 35 H 1.08999 * 109.46934 * 60.00866 * 16 14 13 36 36 H 1.09004 * 109.46712 * 179.97438 * 16 14 13 37 37 H 1.08006 * 119.92498 * 0.02905 * 18 17 14 38 38 H 1.07999 * 120.07590 * 179.97438 * 19 18 17 39 39 H 1.08999 * 109.46911 * 180.02562 * 24 23 21 40 40 H 1.09002 * 109.46750 * 299.99910 * 24 23 21 41 41 H 1.09000 * 109.47304 * 60.00067 * 24 23 21 42 42 H 1.07998 * 120.07390 * 179.70155 * 25 20 19 43 43 H 1.07998 * 119.92725 * 180.30341 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6252 1.9745 -0.8562 5 6 3.5444 1.4434 -0.0887 6 1 4.1338 1.8148 0.7367 7 6 4.1683 0.9702 -1.2235 8 7 5.4487 0.6709 -1.1937 9 14 3.1952 0.7539 -2.8032 10 1 3.1968 2.0292 -3.5641 11 1 3.8179 -0.3141 -3.6259 12 1 1.7973 0.3749 -2.4756 13 7 1.6222 2.1096 1.2403 14 6 0.4132 2.9153 1.0231 15 1 -0.1567 2.4987 0.1927 16 6 0.8122 4.3558 0.6963 17 6 -0.4320 2.8990 2.2707 18 6 -1.8087 2.8046 2.1686 19 6 -2.5884 2.7886 3.3065 20 6 -1.9853 2.8684 4.5633 21 6 -2.8140 2.8524 5.7861 22 8 -4.0228 2.7692 5.6997 23 8 -2.2286 2.9240 6.9974 24 6 -3.1043 2.8969 8.1553 25 6 -0.5961 2.9699 4.6588 26 6 0.1720 2.9785 3.5130 27 1 -0.3633 0.5448 -0.8714 28 1 -0.3633 -1.0270 -0.0362 29 1 -0.3633 0.4823 0.9075 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.8878 0.3383 -1.9921 33 1 2.3695 2.6732 1.6172 34 1 1.3821 4.7723 1.5269 35 1 1.4235 4.3676 -0.2060 36 1 -0.0849 4.9535 0.5348 37 1 -2.2739 2.7425 1.1959 38 1 -3.6629 2.7154 3.2254 39 1 -2.5065 2.9616 9.0644 40 1 -3.7909 3.7423 8.1114 41 1 -3.6728 1.9669 8.1592 42 1 -0.1236 3.0368 5.6276 43 1 1.2471 3.0520 3.5856 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255149376.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:49 Heat of formation + Delta-G solvation = -64.950073 kcal Electronic energy + Delta-G solvation = -23176.879209 eV Core-core repulsion = 19800.906802 eV Total energy + Delta-G solvation = -3375.972407 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.64208 -39.21951 -36.97819 -36.45150 -33.73253 -31.94439 -31.16835 -30.54576 -28.93538 -27.74091 -26.56058 -24.39845 -22.69267 -22.53313 -21.57871 -20.17225 -19.65426 -18.10379 -17.26894 -16.98506 -16.48819 -15.60391 -15.27190 -14.86713 -14.69579 -13.95038 -13.83884 -13.72156 -13.53693 -13.33934 -13.09317 -12.77178 -12.70235 -12.48165 -12.34605 -12.23421 -11.88958 -11.63715 -11.37899 -11.14674 -11.00109 -10.88744 -10.83442 -10.66551 -10.56030 -10.18463 -9.88712 -9.44531 -9.18239 -8.94073 -8.72834 -8.47798 -7.56939 -6.18654 -4.13993 0.71619 1.44344 2.50167 2.55352 3.23111 3.33134 3.35480 3.82505 4.35547 4.58941 4.75906 4.86838 4.92349 4.94660 4.99350 5.09383 5.19748 5.27669 5.39999 5.47587 5.55393 5.59973 5.82368 5.92138 6.02721 6.04640 6.06522 6.12457 6.18112 6.25067 6.30944 6.34487 6.45726 6.65066 6.71117 6.74468 6.91756 6.98772 7.04705 7.40368 7.60490 7.61295 7.89728 8.26644 8.53698 8.89954 9.47480 10.94162 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030121 B = 0.003356 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.354830 B = 8341.628298 C = 8504.757396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C 0.195 3.805 4 H 0.003 0.997 5 C -0.533 4.533 6 H 0.076 0.924 7 C 0.080 3.920 8 N -0.888 5.888 9 Si 0.862 3.138 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.251 1.251 13 N -0.671 5.671 14 C 0.107 3.893 15 H 0.085 0.915 16 C -0.173 4.173 17 C -0.011 4.011 18 C -0.135 4.135 19 C -0.054 4.054 20 C -0.146 4.146 21 C 0.512 3.488 22 O -0.514 6.514 23 O -0.355 6.355 24 C 0.037 3.963 25 C -0.062 4.062 26 C -0.108 4.108 27 H 0.035 0.965 28 H 0.034 0.966 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.264 0.736 33 H 0.342 0.658 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.101 0.899 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.134 0.866 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.698 5.973 11.424 19.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.148 4.148 3 C 0.086 3.914 4 H 0.021 0.979 5 C -0.571 4.571 6 H 0.094 0.906 7 C -0.124 4.124 8 N -0.525 5.525 9 Si 0.689 3.311 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.175 1.175 13 N -0.302 5.302 14 C -0.004 4.004 15 H 0.103 0.897 16 C -0.231 4.231 17 C -0.012 4.012 18 C -0.153 4.153 19 C -0.073 4.073 20 C -0.147 4.147 21 C 0.358 3.642 22 O -0.404 6.404 23 O -0.272 6.272 24 C -0.057 4.057 25 C -0.081 4.081 26 C -0.126 4.126 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.161 0.839 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.146 0.854 38 H 0.150 0.850 39 H 0.120 0.880 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.152 0.848 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.225 5.315 11.562 19.843 hybrid contribution -0.168 0.494 -1.305 1.405 sum -15.393 5.809 10.258 19.389 Atomic orbital electron populations 1.21899 0.98705 0.99625 1.00559 1.21862 0.92642 0.99361 1.00953 1.19462 0.95307 0.90629 0.85996 0.97897 1.21158 0.89111 1.43607 1.03232 0.90587 1.24885 0.94703 0.93975 0.98834 1.69985 1.10829 1.42635 1.29047 0.87226 0.81906 0.77997 0.84003 1.20657 1.21415 1.17543 1.60622 1.05997 1.32505 1.31082 1.20742 0.93417 0.92802 0.93391 0.89679 1.22455 1.01480 0.96665 1.02529 1.20407 0.93318 0.91751 0.95768 1.20987 0.93276 1.02705 0.98324 1.21121 1.00313 0.95329 0.90498 1.18972 0.93461 1.11961 0.90285 1.21359 0.86661 0.72284 0.83867 1.90807 1.15542 1.46412 1.87641 1.86565 1.41297 1.84158 1.15151 1.23260 0.94632 1.02525 0.85269 1.21435 0.92034 0.95098 0.99503 1.21014 1.00734 0.99786 0.91100 0.94543 0.94672 0.92414 0.93120 0.92230 0.92589 0.83865 0.92247 0.91527 0.92804 0.85360 0.85029 0.88015 0.91945 0.91882 0.84842 0.84710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 8.65 37.16 0.32 -2.36 16 2 C -0.11 -2.33 4.98 -26.73 -0.13 -2.46 16 3 C 0.19 4.24 1.70 -68.86 -0.12 4.12 16 4 H 0.00 0.08 6.14 -51.93 -0.32 -0.24 16 5 C -0.53 -13.98 8.99 -34.44 -0.31 -14.29 16 6 H 0.08 2.15 7.73 -52.48 -0.41 1.75 16 7 C 0.08 2.18 5.33 -17.82 -0.09 2.09 16 8 N -0.89 -26.13 13.96 55.43 0.77 -25.35 16 9 Si 0.86 20.42 25.86 -169.99 -4.40 16.03 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.25 -5.61 5.54 56.52 0.31 -5.30 16 13 N -0.67 -12.21 5.18 -102.17 -0.53 -12.74 16 14 C 0.11 1.62 1.63 -68.86 -0.11 1.51 16 15 H 0.09 1.33 5.88 -51.93 -0.31 1.03 16 16 C -0.17 -2.37 9.15 37.16 0.34 -2.03 16 17 C -0.01 -0.16 4.63 -104.52 -0.48 -0.64 16 18 C -0.13 -1.68 9.65 -39.64 -0.38 -2.07 16 19 C -0.05 -0.68 9.60 -39.17 -0.38 -1.06 16 20 C -0.15 -1.89 5.87 -104.98 -0.62 -2.50 16 21 C 0.51 6.78 7.90 34.61 0.27 7.05 16 22 O -0.51 -7.79 16.14 -19.24 -0.31 -8.10 16 23 O -0.36 -4.03 9.82 -40.55 -0.40 -4.42 16 24 C 0.04 0.29 10.56 101.05 1.07 1.36 16 25 C -0.06 -0.76 9.62 -39.17 -0.38 -1.14 16 26 C -0.11 -1.42 9.30 -39.64 -0.37 -1.79 16 27 H 0.04 0.62 7.91 -51.93 -0.41 0.21 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.99 6.44 -51.93 -0.33 0.65 16 30 H 0.05 1.14 5.02 -51.93 -0.26 0.88 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.34 6.26 7.33 -39.29 -0.29 5.97 16 34 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.13 1.39 8.03 -52.48 -0.42 0.97 16 38 H 0.13 1.54 7.65 -52.49 -0.40 1.14 16 39 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.13 1.41 7.61 -52.49 -0.40 1.01 16 43 H 0.14 1.72 7.51 -52.49 -0.39 1.33 16 LS Contribution 348.94 15.07 5.26 5.26 Total: -1.00 -29.95 348.94 -7.52 -37.46 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -6.54 Total: 6.07 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: -1.37 Total: -14.21 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.24 Total: -38.09 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: -0.71 Total: -12.52 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.40 Total: 16.03 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.95 -7.52 -37.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255149376.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.486 kcal (2) G-P(sol) polarization free energy of solvation -29.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds