Wall clock time and date at job start Tue Mar 31 2020 06:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47265 * 2 1 4 4 H 1.08999 * 109.46554 * 303.58030 * 3 2 1 5 5 C 1.50697 * 109.47180 * 183.57879 * 3 2 1 6 6 H 1.08005 * 119.99966 * 245.43668 * 5 3 2 7 7 C 1.37879 * 119.99938 * 65.43631 * 5 3 2 8 8 N 1.31518 * 120.00002 * 196.16410 * 7 5 3 9 9 Si 1.86799 * 120.00072 * 16.16052 * 7 5 3 10 10 H 1.48505 * 109.47010 * 87.24529 * 9 7 5 11 11 H 1.48498 * 109.47064 * 207.24331 * 9 7 5 12 12 H 1.48496 * 109.47322 * 327.24921 * 9 7 5 13 13 N 1.46899 * 109.46744 * 63.57737 * 3 2 1 14 14 C 1.46901 * 110.99736 * 261.94415 * 13 3 2 15 15 H 1.08994 * 109.47014 * 26.52120 * 14 13 3 16 16 C 1.53006 * 109.47184 * 266.51413 * 14 13 3 17 17 C 1.50702 * 109.46592 * 146.52081 * 14 13 3 18 18 C 1.38368 * 119.84672 * 219.99790 * 17 14 13 19 19 C 1.37946 * 120.15267 * 179.97438 * 18 17 14 20 20 C 1.39627 * 119.84470 * 0.02562 * 19 18 17 21 21 C 1.47725 * 120.14400 * 179.97438 * 20 19 18 22 22 O 1.21470 * 120.00487 * 0.02562 * 21 20 19 23 23 O 1.34720 * 119.99413 * 179.72420 * 21 20 19 24 24 C 1.45203 * 116.99582 * 180.27893 * 23 21 20 25 25 C 1.39625 * 119.70127 * 0.27830 * 20 19 18 26 26 C 1.37940 * 119.84842 * 359.42044 * 25 20 19 27 27 H 1.09004 * 109.47036 * 57.98768 * 1 2 3 28 28 H 1.09002 * 109.47103 * 177.98289 * 1 2 3 29 29 H 1.09004 * 109.46957 * 297.98698 * 1 2 3 30 30 H 1.08992 * 109.47396 * 239.99734 * 2 1 3 31 31 H 1.09002 * 109.47080 * 119.99796 * 2 1 3 32 32 H 0.97001 * 120.00291 * 180.02562 * 8 7 5 33 33 H 1.00905 * 110.99440 * 137.99521 * 13 3 2 34 34 H 1.09000 * 109.47326 * 300.00147 * 16 14 13 35 35 H 1.08999 * 109.46934 * 60.00866 * 16 14 13 36 36 H 1.09004 * 109.46712 * 179.97438 * 16 14 13 37 37 H 1.08006 * 119.92498 * 0.02905 * 18 17 14 38 38 H 1.07999 * 120.07590 * 179.97438 * 19 18 17 39 39 H 1.08999 * 109.46911 * 180.02562 * 24 23 21 40 40 H 1.09002 * 109.46750 * 299.99910 * 24 23 21 41 41 H 1.09000 * 109.47304 * 60.00067 * 24 23 21 42 42 H 1.07998 * 120.07390 * 179.70155 * 25 20 19 43 43 H 1.07998 * 119.92725 * 180.30341 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6252 1.9745 -0.8562 5 6 3.5444 1.4434 -0.0887 6 1 4.1338 1.8148 0.7367 7 6 4.1683 0.9702 -1.2235 8 7 5.4487 0.6709 -1.1937 9 14 3.1952 0.7539 -2.8032 10 1 3.1968 2.0292 -3.5641 11 1 3.8179 -0.3141 -3.6259 12 1 1.7973 0.3749 -2.4756 13 7 1.6222 2.1096 1.2403 14 6 0.4132 2.9153 1.0231 15 1 -0.1567 2.4987 0.1927 16 6 0.8122 4.3558 0.6963 17 6 -0.4320 2.8990 2.2707 18 6 -1.8087 2.8046 2.1686 19 6 -2.5884 2.7886 3.3065 20 6 -1.9853 2.8684 4.5633 21 6 -2.8140 2.8524 5.7861 22 8 -4.0228 2.7692 5.6997 23 8 -2.2286 2.9240 6.9974 24 6 -3.1043 2.8969 8.1553 25 6 -0.5961 2.9699 4.6588 26 6 0.1720 2.9785 3.5130 27 1 -0.3633 0.5448 -0.8714 28 1 -0.3633 -1.0270 -0.0362 29 1 -0.3633 0.4823 0.9075 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.8878 0.3383 -1.9921 33 1 2.3695 2.6732 1.6172 34 1 1.3821 4.7723 1.5269 35 1 1.4235 4.3676 -0.2060 36 1 -0.0849 4.9535 0.5348 37 1 -2.2739 2.7425 1.1959 38 1 -3.6629 2.7154 3.2254 39 1 -2.5065 2.9616 9.0644 40 1 -3.7909 3.7423 8.1114 41 1 -3.6728 1.9669 8.1592 42 1 -0.1236 3.0368 5.6276 43 1 1.2471 3.0520 3.5856 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255149376.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:48 Heat of formation + Delta-G solvation = -82.346415 kcal Electronic energy + Delta-G solvation = -23177.633571 eV Core-core repulsion = 19800.906802 eV Total energy + Delta-G solvation = -3376.726769 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.60726 -40.28232 -38.33666 -37.46711 -35.26654 -33.82459 -32.22434 -31.66902 -30.25757 -28.51706 -28.23309 -25.46347 -24.29628 -23.63778 -22.65391 -21.42607 -21.15439 -19.12157 -18.89591 -18.14585 -17.38032 -17.19200 -16.52788 -16.13462 -15.61143 -15.52578 -15.12968 -14.86431 -14.65733 -14.46826 -14.35518 -14.15085 -13.97623 -13.79532 -13.64745 -13.32102 -13.13109 -12.99677 -12.65596 -12.57033 -12.48599 -12.22862 -11.98354 -11.82262 -11.75705 -11.67449 -11.46532 -11.18641 -11.04892 -10.54906 -9.90483 -9.76734 -9.05556 -8.30261 -6.28641 -0.29107 0.47768 1.35363 1.39484 1.48231 1.49807 1.70808 2.36486 2.82480 3.04694 3.47543 3.70706 3.92386 4.00237 4.05602 4.27568 4.30642 4.33851 4.37540 4.50038 4.54675 4.57181 4.57502 4.65139 4.70505 4.81924 4.89385 4.93951 5.00104 5.12969 5.18898 5.24405 5.28394 5.31895 5.34971 5.43673 5.47418 5.57452 5.70131 5.85243 5.93192 6.07204 6.54150 6.65583 6.72067 6.91661 7.37079 8.86101 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030121 B = 0.003356 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.354830 B = 8341.628298 C = 8504.757396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 C 0.203 3.797 4 H 0.006 0.994 5 C -0.531 4.531 6 H 0.040 0.960 7 C 0.023 3.977 8 N -0.940 5.940 9 Si 0.922 3.078 10 H -0.275 1.275 11 H -0.292 1.292 12 H -0.226 1.226 13 N -0.671 5.671 14 C 0.110 3.890 15 H 0.086 0.914 16 C -0.168 4.168 17 C -0.020 4.020 18 C -0.130 4.130 19 C -0.056 4.056 20 C -0.154 4.154 21 C 0.513 3.487 22 O -0.539 6.539 23 O -0.358 6.358 24 C 0.029 3.971 25 C -0.058 4.058 26 C -0.116 4.116 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.043 0.957 32 H 0.264 0.736 33 H 0.339 0.661 34 H 0.063 0.937 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.148 0.852 38 H 0.140 0.860 39 H 0.133 0.867 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.149 0.851 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.216 6.334 11.571 21.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.149 4.149 3 C 0.093 3.907 4 H 0.023 0.977 5 C -0.570 4.570 6 H 0.058 0.942 7 C -0.176 4.176 8 N -0.579 5.579 9 Si 0.746 3.254 10 H -0.201 1.201 11 H -0.219 1.219 12 H -0.149 1.149 13 N -0.302 5.302 14 C 0.000 4.000 15 H 0.104 0.896 16 C -0.227 4.227 17 C -0.021 4.021 18 C -0.148 4.148 19 C -0.074 4.074 20 C -0.156 4.156 21 C 0.361 3.639 22 O -0.431 6.431 23 O -0.275 6.275 24 C -0.064 4.064 25 C -0.076 4.076 26 C -0.134 4.134 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.158 0.842 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.166 0.834 38 H 0.157 0.843 39 H 0.152 0.848 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.166 0.834 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.766 5.691 11.737 22.040 hybrid contribution 0.641 0.423 -1.167 1.397 sum -17.125 6.114 10.569 21.032 Atomic orbital electron populations 1.21790 0.95530 1.01039 1.01450 1.21781 0.95452 0.98197 0.99502 1.19274 0.92149 0.91690 0.87584 0.97688 1.21494 0.91628 1.41997 1.01836 0.94218 1.25711 0.95531 0.94031 1.02312 1.70124 1.12913 1.44898 1.29980 0.86248 0.81655 0.77883 0.79574 1.20128 1.21860 1.14898 1.60565 1.06901 1.33531 1.29191 1.20748 0.91999 0.92970 0.94314 0.89599 1.22393 1.02238 0.96252 1.01816 1.20282 0.93689 0.93051 0.95086 1.21137 0.92646 1.01850 0.99210 1.21264 1.00801 0.94965 0.90402 1.19141 0.93780 1.12035 0.90601 1.21423 0.86289 0.71702 0.84533 1.90792 1.16469 1.47748 1.88057 1.86553 1.41978 1.83586 1.15334 1.23591 0.95150 1.02650 0.85028 1.21541 0.91775 0.94350 0.99915 1.21068 1.00809 1.00145 0.91394 0.93409 0.93075 0.91706 0.94526 0.93860 0.92675 0.84246 0.91846 0.93259 0.90577 0.83440 0.84253 0.84842 0.91717 0.91910 0.83371 0.84907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.57 8.65 71.98 0.62 -3.95 16 2 C -0.11 -4.55 4.98 30.60 0.15 -4.40 16 3 C 0.20 8.66 1.70 44.17 0.08 8.73 16 4 H 0.01 0.23 6.14 -2.39 -0.01 0.22 16 5 C -0.53 -28.45 8.99 25.60 0.23 -28.22 16 6 H 0.04 2.35 7.73 -2.91 -0.02 2.33 16 7 C 0.02 1.28 5.33 84.65 0.45 1.73 16 8 N -0.94 -57.03 13.96 21.45 0.30 -56.73 16 9 Si 0.92 41.99 25.86 68.60 1.77 43.76 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 12 H -0.23 -9.30 5.54 99.48 0.55 -8.75 16 13 N -0.67 -23.92 5.18 -477.15 -2.47 -26.39 16 14 C 0.11 3.10 1.63 44.17 0.07 3.17 16 15 H 0.09 2.43 5.88 -2.39 -0.01 2.42 16 16 C -0.17 -4.33 9.15 71.98 0.66 -3.67 16 17 C -0.02 -0.51 4.63 -19.80 -0.09 -0.60 16 18 C -0.13 -2.89 9.65 22.23 0.21 -2.68 16 19 C -0.06 -1.28 9.60 22.54 0.22 -1.07 16 20 C -0.15 -3.72 5.87 -20.10 -0.12 -3.84 16 21 C 0.51 12.81 7.90 70.33 0.56 13.37 16 22 O -0.54 -15.65 16.14 19.93 0.32 -15.33 16 23 O -0.36 -7.48 9.82 -56.30 -0.55 -8.03 16 24 C 0.03 0.40 10.56 113.37 1.20 1.60 16 25 C -0.06 -1.31 9.62 22.53 0.22 -1.09 16 26 C -0.12 -2.86 9.30 22.23 0.21 -2.65 16 27 H 0.05 1.44 7.91 -2.38 -0.02 1.42 16 28 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.06 2.01 6.44 -2.38 -0.02 1.99 16 30 H 0.04 1.58 5.02 -2.39 -0.01 1.57 16 31 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 33 H 0.34 12.49 7.33 -89.69 -0.66 11.84 16 34 H 0.06 1.56 8.12 -2.39 -0.02 1.54 16 35 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.15 2.67 8.03 -2.91 -0.02 2.64 16 38 H 0.14 2.96 7.65 -2.91 -0.02 2.93 16 39 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.15 2.84 7.61 -2.91 -0.02 2.82 16 43 H 0.13 3.28 7.51 -2.91 -0.02 3.26 16 Total: -1.00 -65.19 348.94 4.23 -60.96 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 0.19 Total: 25.33 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: 4.66 Total: -23.57 kcal Atomic # 7 Polarization: -80.95 SS G_CDS: -2.17 Total: -83.12 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.23 Total: -23.36 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 1.77 Total: 43.76 kcal Total: -65.19 4.23 -60.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255149376.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.388 kcal (2) G-P(sol) polarization free energy of solvation -65.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds