Wall clock time and date at job start Tue Mar 31 2020 06:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47019 * 2 1 4 4 H 1.08999 * 109.47513 * 54.35931 * 3 2 1 5 5 C 1.50702 * 109.47560 * 174.36051 * 3 2 1 6 6 H 1.08004 * 120.00278 * 116.29502 * 5 3 2 7 7 C 1.37882 * 119.99671 * 296.30416 * 5 3 2 8 8 N 1.31514 * 119.99893 * 353.41044 * 7 5 3 9 9 Si 1.86804 * 119.99871 * 173.14163 * 7 5 3 10 10 H 1.48491 * 109.46897 * 180.27242 * 9 7 5 11 11 H 1.48501 * 109.46857 * 300.27174 * 9 7 5 12 12 H 1.48502 * 109.47012 * 60.26957 * 9 7 5 13 13 N 1.46905 * 109.47185 * 294.35872 * 3 2 1 14 14 C 1.46897 * 111.00008 * 154.23347 * 13 3 2 15 15 H 1.09006 * 109.47096 * 36.75136 * 14 13 3 16 16 C 1.52995 * 109.47433 * 276.74704 * 14 13 3 17 17 C 1.50709 * 109.46801 * 156.74834 * 14 13 3 18 18 C 1.38358 * 119.84964 * 39.72972 * 17 14 13 19 19 C 1.37948 * 120.15198 * 179.72661 * 18 17 14 20 20 C 1.39634 * 119.84394 * 0.54337 * 19 18 17 21 21 C 1.47725 * 120.14832 * 179.70712 * 20 19 18 22 22 O 1.21468 * 119.99769 * 180.02562 * 21 20 19 23 23 O 1.34706 * 119.99880 * 0.02562 * 21 20 19 24 24 C 1.45209 * 116.99566 * 180.02562 * 23 21 20 25 25 C 1.39632 * 119.69993 * 359.72741 * 20 19 18 26 26 C 1.37948 * 119.84883 * 0.02562 * 25 20 19 27 27 H 1.08996 * 109.47722 * 65.08744 * 1 2 3 28 28 H 1.09002 * 109.46743 * 185.08711 * 1 2 3 29 29 H 1.08995 * 109.46946 * 305.08327 * 1 2 3 30 30 H 1.09007 * 109.47066 * 239.99948 * 2 1 3 31 31 H 1.09000 * 109.47606 * 119.99755 * 2 1 3 32 32 H 0.96996 * 119.99863 * 354.92448 * 8 7 5 33 33 H 1.00901 * 111.00132 * 278.19215 * 13 3 2 34 34 H 1.08999 * 109.47065 * 65.20407 * 16 14 13 35 35 H 1.09001 * 109.47122 * 185.20928 * 16 14 13 36 36 H 1.09000 * 109.47164 * 305.20721 * 16 14 13 37 37 H 1.07997 * 119.92874 * 359.97438 * 18 17 14 38 38 H 1.07999 * 120.07798 * 180.26991 * 19 18 17 39 39 H 1.08999 * 109.46959 * 299.99515 * 24 23 21 40 40 H 1.08999 * 109.47232 * 60.00157 * 24 23 21 41 41 H 1.08996 * 109.46586 * 179.97438 * 24 23 21 42 42 H 1.08000 * 120.07339 * 179.97438 * 25 20 19 43 43 H 1.08000 * 119.92322 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5965 1.9847 0.8351 5 6 3.5405 1.4449 0.1396 6 1 4.1565 1.8324 -0.6584 7 6 4.1269 0.9522 1.2861 8 7 3.3784 0.6007 2.3088 9 14 5.9841 0.7769 1.3841 10 1 6.3597 0.2225 2.7094 11 1 6.4519 -0.1397 0.3134 12 1 6.6170 2.1086 1.2071 13 7 1.6646 2.0946 -1.2617 14 6 1.5662 3.5505 -1.0929 15 1 2.3404 3.8896 -0.4045 16 6 0.1898 3.9067 -0.5280 17 6 1.7510 4.2246 -2.4282 18 6 1.1847 3.6715 -3.5630 19 6 1.3451 4.2863 -4.7874 20 6 2.0905 5.4633 -4.8817 21 6 2.2720 6.1237 -6.1906 22 8 2.9214 7.1472 -6.2695 23 8 1.7174 5.5909 -7.2965 24 6 1.9376 6.2933 -8.5482 25 6 2.6639 6.0129 -3.7333 26 6 2.4913 5.3904 -2.5144 27 1 -0.3634 0.4329 -0.9320 28 1 -0.3633 -1.0237 0.0911 29 1 -0.3633 0.5906 0.8409 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.4213 0.7563 2.2853 33 1 2.3134 1.8588 -1.9976 34 1 0.0920 3.4958 0.4769 35 1 0.0822 4.9907 -0.4894 36 1 -0.5857 3.4872 -1.1690 37 1 0.6125 2.7586 -3.4895 38 1 0.8990 3.8559 -5.6718 39 1 1.5325 7.3025 -8.4746 40 1 3.0070 6.3449 -8.7526 41 1 1.4388 5.7593 -9.3570 42 1 3.2420 6.9228 -3.7993 43 1 2.9339 5.8147 -1.6253 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255149378.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:52 Heat of formation + Delta-G solvation = -76.153488 kcal Electronic energy + Delta-G solvation = -23062.176408 eV Core-core repulsion = 19685.718184 eV Total energy + Delta-G solvation = -3376.458224 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.65599 -39.19272 -36.84524 -36.43310 -33.97396 -31.64020 -31.05835 -30.43648 -28.89176 -27.76440 -25.62819 -24.29998 -22.99432 -22.58222 -21.41700 -20.03044 -19.66948 -18.10030 -17.29514 -17.08183 -16.50140 -15.69616 -15.34885 -14.70392 -14.20248 -13.91536 -13.79745 -13.76761 -13.56091 -13.34131 -13.00528 -12.88639 -12.64866 -12.29948 -12.14176 -12.04219 -11.78229 -11.28475 -11.20043 -11.01295 -10.96292 -10.83188 -10.73117 -10.54631 -10.33483 -10.15256 -9.86360 -9.73400 -8.96115 -8.94479 -8.74607 -8.37270 -7.39372 -6.37404 -4.16124 0.68653 1.42229 2.48585 2.53355 3.39154 3.40930 3.59096 3.80916 4.47939 4.58370 4.81661 4.86364 4.92506 4.93754 4.99059 5.13306 5.26310 5.29922 5.46444 5.51165 5.73347 5.86643 5.91421 6.05980 6.07208 6.14901 6.18291 6.22796 6.29198 6.35864 6.42171 6.45831 6.58763 6.74332 6.82874 6.90152 6.91205 7.13658 7.29657 7.52757 7.60035 7.88560 7.99641 8.37208 8.53188 8.77260 9.56564 10.94881 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018823 B = 0.003645 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.220488 B = 7679.884226 C = 8381.441785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.203 3.797 4 H 0.027 0.973 5 C -0.628 4.628 6 H 0.047 0.953 7 C 0.029 3.971 8 N -0.906 5.906 9 Si 1.059 2.941 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.290 1.290 13 N -0.675 5.675 14 C 0.118 3.882 15 H 0.060 0.940 16 C -0.130 4.130 17 C -0.031 4.031 18 C -0.115 4.115 19 C -0.064 4.064 20 C -0.143 4.143 21 C 0.512 3.488 22 O -0.513 6.513 23 O -0.355 6.355 24 C 0.037 3.963 25 C -0.054 4.054 26 C -0.128 4.128 27 H 0.052 0.948 28 H 0.028 0.972 29 H 0.037 0.963 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.273 0.727 33 H 0.332 0.668 34 H 0.058 0.942 35 H 0.047 0.953 36 H 0.058 0.942 37 H 0.141 0.859 38 H 0.134 0.866 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.101 0.899 42 H 0.133 0.867 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.800 8.472 -14.846 18.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.148 4.148 3 C 0.095 3.905 4 H 0.044 0.956 5 C -0.667 4.667 6 H 0.065 0.935 7 C -0.177 4.177 8 N -0.542 5.542 9 Si 0.888 3.112 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.216 1.216 13 N -0.305 5.305 14 C 0.008 3.992 15 H 0.078 0.922 16 C -0.188 4.188 17 C -0.031 4.031 18 C -0.134 4.134 19 C -0.082 4.082 20 C -0.145 4.145 21 C 0.358 3.642 22 O -0.402 6.402 23 O -0.272 6.272 24 C -0.057 4.057 25 C -0.073 4.073 26 C -0.147 4.147 27 H 0.071 0.929 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.149 0.851 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.159 0.841 38 H 0.152 0.848 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.120 0.880 42 H 0.151 0.849 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.068 8.124 -13.829 16.820 hybrid contribution -0.055 0.941 -1.103 1.451 sum -5.123 9.065 -14.932 18.204 Atomic orbital electron populations 1.21698 0.98244 0.98746 1.00822 1.21549 0.92866 0.99395 1.01036 1.19285 0.93821 0.90649 0.86735 0.95568 1.22618 0.92342 1.46703 1.05011 0.93457 1.25668 1.06507 0.93294 0.92254 1.70790 1.08127 1.43873 1.31364 0.83689 0.74909 0.76470 0.76175 1.20755 1.21448 1.21617 1.60998 1.54700 1.04724 1.10108 1.20448 0.97651 0.90027 0.91116 0.92213 1.21753 0.96199 0.99563 1.01283 1.20577 0.92740 0.93566 0.96250 1.21143 1.00374 1.00713 0.91132 1.21449 0.95217 0.93067 0.98471 1.19006 1.06512 0.98905 0.90042 1.21339 0.75720 0.82300 0.84843 1.90812 1.38423 1.24127 1.86859 1.86558 1.69989 1.53712 1.16943 1.23264 1.02488 0.97552 0.82389 1.21167 0.96278 0.98957 0.90869 1.21091 0.99934 0.96087 0.97543 0.92893 0.95268 0.94347 0.93945 0.91652 0.91585 0.85068 0.92276 0.93396 0.92306 0.84091 0.84777 0.91907 0.91871 0.88014 0.84884 0.85045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.75 37.16 0.36 -2.23 16 2 C -0.11 -2.44 5.29 -26.73 -0.14 -2.59 16 3 C 0.20 4.68 1.41 -68.86 -0.10 4.58 16 4 H 0.03 0.66 6.45 -51.93 -0.33 0.33 16 5 C -0.63 -16.45 8.26 -34.44 -0.28 -16.73 16 6 H 0.05 1.26 7.71 -52.48 -0.40 0.85 16 7 C 0.03 0.78 5.20 -17.82 -0.09 0.68 16 8 N -0.91 -25.98 12.76 55.43 0.71 -25.27 16 9 Si 1.06 24.46 29.91 -169.99 -5.08 19.38 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.68 -12.88 4.97 -102.17 -0.51 -13.39 16 14 C 0.12 2.02 2.63 -68.86 -0.18 1.84 16 15 H 0.06 1.18 7.53 -51.93 -0.39 0.79 16 16 C -0.13 -2.01 9.33 37.15 0.35 -1.66 16 17 C -0.03 -0.46 4.73 -104.52 -0.49 -0.95 16 18 C -0.12 -1.56 9.02 -39.64 -0.36 -1.92 16 19 C -0.06 -0.80 9.62 -39.17 -0.38 -1.17 16 20 C -0.14 -1.93 5.87 -104.98 -0.62 -2.54 16 21 C 0.51 6.94 7.90 34.61 0.27 7.21 16 22 O -0.51 -7.96 16.14 -19.24 -0.31 -8.27 16 23 O -0.36 -4.07 9.82 -40.51 -0.40 -4.47 16 24 C 0.04 0.30 10.56 101.05 1.07 1.36 16 25 C -0.05 -0.73 9.60 -39.17 -0.38 -1.11 16 26 C -0.13 -1.79 9.65 -39.64 -0.38 -2.17 16 27 H 0.05 0.94 7.91 -51.93 -0.41 0.53 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 1.63 6.14 -51.93 -0.32 1.31 16 32 H 0.27 7.75 6.16 -40.82 -0.25 7.50 16 33 H 0.33 6.50 7.70 -39.29 -0.30 6.19 16 34 H 0.06 0.99 7.39 -51.93 -0.38 0.61 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.14 1.86 7.70 -52.49 -0.40 1.45 16 38 H 0.13 1.41 7.61 -52.49 -0.40 1.01 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.13 1.68 7.65 -52.49 -0.40 1.28 16 43 H 0.13 1.70 8.03 -52.49 -0.42 1.28 16 LS Contribution 356.84 15.07 5.38 5.38 Total: -1.00 -29.25 356.84 -8.17 -37.41 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -6.60 Total: 6.64 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: -1.35 Total: -17.41 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.20 Total: -38.66 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.71 Total: -12.74 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -5.08 Total: 19.38 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.25 -8.17 -37.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255149378.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.739 kcal (2) G-P(sol) polarization free energy of solvation -29.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds