Wall clock time and date at job start Tue Mar 31 2020 06:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47019 * 2 1 4 4 H 1.08999 * 109.47513 * 54.35931 * 3 2 1 5 5 C 1.50702 * 109.47560 * 174.36051 * 3 2 1 6 6 H 1.08004 * 120.00278 * 116.29502 * 5 3 2 7 7 C 1.37882 * 119.99671 * 296.30416 * 5 3 2 8 8 N 1.31514 * 119.99893 * 353.41044 * 7 5 3 9 9 Si 1.86804 * 119.99871 * 173.14163 * 7 5 3 10 10 H 1.48491 * 109.46897 * 180.27242 * 9 7 5 11 11 H 1.48501 * 109.46857 * 300.27174 * 9 7 5 12 12 H 1.48502 * 109.47012 * 60.26957 * 9 7 5 13 13 N 1.46905 * 109.47185 * 294.35872 * 3 2 1 14 14 C 1.46897 * 111.00008 * 154.23347 * 13 3 2 15 15 H 1.09006 * 109.47096 * 36.75136 * 14 13 3 16 16 C 1.52995 * 109.47433 * 276.74704 * 14 13 3 17 17 C 1.50709 * 109.46801 * 156.74834 * 14 13 3 18 18 C 1.38358 * 119.84964 * 39.72972 * 17 14 13 19 19 C 1.37948 * 120.15198 * 179.72661 * 18 17 14 20 20 C 1.39634 * 119.84394 * 0.54337 * 19 18 17 21 21 C 1.47725 * 120.14832 * 179.70712 * 20 19 18 22 22 O 1.21468 * 119.99769 * 180.02562 * 21 20 19 23 23 O 1.34706 * 119.99880 * 0.02562 * 21 20 19 24 24 C 1.45209 * 116.99566 * 180.02562 * 23 21 20 25 25 C 1.39632 * 119.69993 * 359.72741 * 20 19 18 26 26 C 1.37948 * 119.84883 * 0.02562 * 25 20 19 27 27 H 1.08996 * 109.47722 * 65.08744 * 1 2 3 28 28 H 1.09002 * 109.46743 * 185.08711 * 1 2 3 29 29 H 1.08995 * 109.46946 * 305.08327 * 1 2 3 30 30 H 1.09007 * 109.47066 * 239.99948 * 2 1 3 31 31 H 1.09000 * 109.47606 * 119.99755 * 2 1 3 32 32 H 0.96996 * 119.99863 * 354.92448 * 8 7 5 33 33 H 1.00901 * 111.00132 * 278.19215 * 13 3 2 34 34 H 1.08999 * 109.47065 * 65.20407 * 16 14 13 35 35 H 1.09001 * 109.47122 * 185.20928 * 16 14 13 36 36 H 1.09000 * 109.47164 * 305.20721 * 16 14 13 37 37 H 1.07997 * 119.92874 * 359.97438 * 18 17 14 38 38 H 1.07999 * 120.07798 * 180.26991 * 19 18 17 39 39 H 1.08999 * 109.46959 * 299.99515 * 24 23 21 40 40 H 1.08999 * 109.47232 * 60.00157 * 24 23 21 41 41 H 1.08996 * 109.46586 * 179.97438 * 24 23 21 42 42 H 1.08000 * 120.07339 * 179.97438 * 25 20 19 43 43 H 1.08000 * 119.92322 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5965 1.9847 0.8351 5 6 3.5405 1.4449 0.1396 6 1 4.1565 1.8324 -0.6584 7 6 4.1269 0.9522 1.2861 8 7 3.3784 0.6007 2.3088 9 14 5.9841 0.7769 1.3841 10 1 6.3597 0.2225 2.7094 11 1 6.4519 -0.1397 0.3134 12 1 6.6170 2.1086 1.2071 13 7 1.6646 2.0946 -1.2617 14 6 1.5662 3.5505 -1.0929 15 1 2.3404 3.8896 -0.4045 16 6 0.1898 3.9067 -0.5280 17 6 1.7510 4.2246 -2.4282 18 6 1.1847 3.6715 -3.5630 19 6 1.3451 4.2863 -4.7874 20 6 2.0905 5.4633 -4.8817 21 6 2.2720 6.1237 -6.1906 22 8 2.9214 7.1472 -6.2695 23 8 1.7174 5.5909 -7.2965 24 6 1.9376 6.2933 -8.5482 25 6 2.6639 6.0129 -3.7333 26 6 2.4913 5.3904 -2.5144 27 1 -0.3634 0.4329 -0.9320 28 1 -0.3633 -1.0237 0.0911 29 1 -0.3633 0.5906 0.8409 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.4213 0.7563 2.2853 33 1 2.3134 1.8588 -1.9976 34 1 0.0920 3.4958 0.4769 35 1 0.0822 4.9907 -0.4894 36 1 -0.5857 3.4872 -1.1690 37 1 0.6125 2.7586 -3.4895 38 1 0.8990 3.8559 -5.6718 39 1 1.5325 7.3025 -8.4746 40 1 3.0070 6.3449 -8.7526 41 1 1.4388 5.7593 -9.3570 42 1 3.2420 6.9228 -3.7993 43 1 2.9339 5.8147 -1.6253 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255149378.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:51 Heat of formation + Delta-G solvation = -91.416673 kcal Electronic energy + Delta-G solvation = -23062.838269 eV Core-core repulsion = 19685.718184 eV Total energy + Delta-G solvation = -3377.120085 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.66530 -40.33332 -38.34231 -37.51408 -35.56617 -33.46939 -32.18593 -31.70006 -30.27256 -28.55239 -27.43863 -25.54809 -24.71322 -23.67519 -22.56354 -21.58098 -21.12245 -19.16742 -19.07479 -18.19167 -17.41584 -17.08990 -16.65391 -15.72889 -15.67816 -15.63927 -15.25843 -14.96624 -14.65168 -14.55484 -14.31848 -14.15786 -14.03915 -13.86196 -13.35794 -13.21490 -13.01758 -12.81878 -12.61187 -12.55379 -12.32460 -12.08816 -11.98365 -11.96421 -11.84657 -11.68897 -11.60658 -11.38440 -10.84263 -10.44012 -10.00403 -9.88906 -9.14835 -8.48269 -6.31478 -0.39354 0.37048 1.42663 1.51527 1.56719 1.65008 1.76071 2.55910 2.73439 3.19043 3.43674 3.61087 3.79437 3.91629 3.97686 4.29334 4.32760 4.33563 4.40240 4.43868 4.53272 4.55980 4.60267 4.69103 4.72829 4.79933 4.89094 5.00010 5.00841 5.06880 5.15130 5.24407 5.27373 5.29768 5.35567 5.41226 5.49421 5.61763 5.72097 5.83134 5.98781 6.03360 6.51878 6.60446 6.61249 6.79780 7.48740 8.79453 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018823 B = 0.003645 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.220488 B = 7679.884226 C = 8381.441785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 C 0.211 3.789 4 H 0.001 0.999 5 C -0.633 4.633 6 H 0.040 0.960 7 C -0.019 4.019 8 N -0.931 5.931 9 Si 1.101 2.899 10 H -0.286 1.286 11 H -0.274 1.274 12 H -0.277 1.277 13 N -0.660 5.660 14 C 0.121 3.879 15 H 0.027 0.973 16 C -0.123 4.123 17 C -0.043 4.043 18 C -0.114 4.114 19 C -0.052 4.052 20 C -0.149 4.149 21 C 0.515 3.485 22 O -0.538 6.538 23 O -0.355 6.355 24 C 0.028 3.972 25 C -0.056 4.056 26 C -0.133 4.133 27 H 0.066 0.934 28 H 0.046 0.954 29 H 0.033 0.967 30 H 0.040 0.960 31 H 0.033 0.967 32 H 0.263 0.737 33 H 0.331 0.669 34 H 0.039 0.961 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.148 0.852 38 H 0.159 0.841 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.357 8.644 -17.094 20.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.143 4.143 3 C 0.101 3.899 4 H 0.019 0.981 5 C -0.672 4.672 6 H 0.058 0.942 7 C -0.220 4.220 8 N -0.568 5.568 9 Si 0.925 3.075 10 H -0.211 1.211 11 H -0.200 1.200 12 H -0.203 1.203 13 N -0.289 5.289 14 C 0.011 3.989 15 H 0.045 0.955 16 C -0.181 4.181 17 C -0.043 4.043 18 C -0.132 4.132 19 C -0.070 4.070 20 C -0.150 4.150 21 C 0.362 3.638 22 O -0.430 6.430 23 O -0.271 6.271 24 C -0.064 4.064 25 C -0.074 4.074 26 C -0.151 4.151 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.148 0.852 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.165 0.835 38 H 0.176 0.824 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.154 0.846 42 H 0.157 0.843 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.648 8.299 -16.108 18.980 hybrid contribution 0.092 0.945 -0.515 1.081 sum -5.556 9.245 -16.623 19.815 Atomic orbital electron populations 1.21563 0.95310 1.00012 1.01361 1.21410 0.95445 0.98179 0.99300 1.19064 0.91934 0.91259 0.87598 0.98104 1.22971 0.94189 1.45643 1.04439 0.94164 1.26869 1.09844 0.93049 0.92188 1.70888 1.07764 1.45787 1.32328 0.83125 0.70924 0.77218 0.76262 1.21150 1.19992 1.20294 1.60956 1.53863 1.05972 1.08091 1.20388 0.97651 0.88733 0.92158 0.95456 1.21686 0.95410 1.00792 1.00189 1.20379 0.94327 0.94206 0.95424 1.21188 1.00177 1.00841 0.90972 1.21631 0.94260 0.92288 0.98809 1.19172 1.06445 0.99231 0.90168 1.21331 0.75295 0.81827 0.85393 1.90802 1.39654 1.25237 1.87291 1.86542 1.69313 1.53837 1.17432 1.23611 1.03066 0.98161 0.81596 1.21242 0.96311 0.99153 0.90744 1.21133 0.99927 0.96014 0.98051 0.91452 0.93456 0.94790 0.94119 0.94822 0.92671 0.85219 0.94199 0.91524 0.91094 0.83468 0.82358 0.91732 0.91952 0.84613 0.84326 0.84747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.57 9.75 71.98 0.70 -3.86 16 2 C -0.10 -4.68 5.29 30.59 0.16 -4.52 16 3 C 0.21 9.86 1.41 44.17 0.06 9.92 16 4 H 0.00 0.06 6.45 -2.39 -0.02 0.04 16 5 C -0.63 -33.73 8.26 25.60 0.21 -33.52 16 6 H 0.04 2.15 7.71 -2.91 -0.02 2.13 16 7 C -0.02 -1.06 5.20 84.66 0.44 -0.62 16 8 N -0.93 -54.72 12.76 21.45 0.27 -54.45 16 9 Si 1.10 49.53 29.91 68.60 2.05 51.58 16 10 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 11 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 12 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 13 N -0.66 -24.99 4.97 -477.14 -2.37 -27.37 16 14 C 0.12 4.13 2.63 44.17 0.12 4.25 16 15 H 0.03 1.12 7.53 -2.38 -0.02 1.10 16 16 C -0.12 -3.73 9.33 71.98 0.67 -3.06 16 17 C -0.04 -1.23 4.73 -19.80 -0.09 -1.33 16 18 C -0.11 -2.84 9.02 22.23 0.20 -2.64 16 19 C -0.05 -1.16 9.62 22.54 0.22 -0.94 16 20 C -0.15 -3.72 5.87 -20.10 -0.12 -3.84 16 21 C 0.51 13.01 7.90 70.33 0.56 13.57 16 22 O -0.54 -16.07 16.14 19.94 0.32 -15.75 16 23 O -0.36 -7.23 9.82 -56.16 -0.55 -7.78 16 24 C 0.03 0.38 10.56 113.37 1.20 1.58 16 25 C -0.06 -1.45 9.60 22.54 0.22 -1.24 16 26 C -0.13 -3.62 9.65 22.23 0.21 -3.41 16 27 H 0.07 2.25 7.91 -2.39 -0.02 2.24 16 28 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 31 H 0.03 1.71 6.14 -2.39 -0.01 1.70 16 32 H 0.26 15.52 6.16 -92.71 -0.57 14.95 16 33 H 0.33 12.75 7.70 -89.69 -0.69 12.06 16 34 H 0.04 1.34 7.39 -2.39 -0.02 1.33 16 35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.15 3.50 7.70 -2.91 -0.02 3.48 16 38 H 0.16 2.76 7.61 -2.91 -0.02 2.74 16 39 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.14 3.38 7.65 -2.91 -0.02 3.36 16 43 H 0.13 3.49 8.03 -2.91 -0.02 3.46 16 Total: -1.00 -63.39 356.84 4.98 -58.40 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: 0.51 Total: 25.02 kcal Atomic # 6 Polarization: -34.41 SS G_CDS: 4.75 Total: -29.66 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -2.10 Total: -81.82 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.23 Total: -23.53 kcal Atomic # 14 Polarization: 49.53 SS G_CDS: 2.05 Total: 51.58 kcal Total: -63.39 4.98 -58.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255149378.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.014 kcal (2) G-P(sol) polarization free energy of solvation -63.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds