Wall clock time and date at job start Tue Mar 31 2020 06:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47234 * 2 1 4 4 H 1.09006 * 109.46756 * 55.38224 * 3 2 1 5 5 C 1.50700 * 109.47015 * 175.37634 * 3 2 1 6 6 H 1.08000 * 119.99581 * 120.00267 * 5 3 2 7 7 C 1.37872 * 120.00128 * 299.99896 * 5 3 2 8 8 N 1.31515 * 120.00677 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99867 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47128 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46972 * 120.00359 * 9 7 5 12 12 H 1.48499 * 109.47127 * 240.00474 * 9 7 5 13 13 N 1.46890 * 109.47146 * 295.37942 * 3 2 1 14 14 C 1.46903 * 111.00223 * 156.74489 * 13 3 2 15 15 H 1.09002 * 109.46550 * 36.88627 * 14 13 3 16 16 C 1.52997 * 109.47439 * 156.88806 * 14 13 3 17 17 C 1.50704 * 109.46932 * 295.00135 * 16 14 13 18 18 C 1.38234 * 119.99836 * 90.00118 * 17 16 14 19 19 C 1.38234 * 119.99696 * 180.28101 * 18 17 16 20 20 C 1.38236 * 120.00165 * 359.48016 * 19 18 17 21 21 C 1.38234 * 119.99934 * 0.51986 * 20 19 18 22 22 C 1.38230 * 120.00091 * 270.02277 * 17 16 14 23 23 C 1.50700 * 109.47335 * 276.89201 * 14 13 3 24 24 O 1.20825 * 119.99600 * 333.99127 * 23 14 13 25 25 O 1.34223 * 120.00456 * 153.99683 * 23 14 13 26 26 C 1.45199 * 117.00207 * 179.97438 * 25 23 14 27 27 H 1.09004 * 109.46963 * 184.01371 * 1 2 3 28 28 H 1.09003 * 109.47083 * 304.01333 * 1 2 3 29 29 H 1.08994 * 109.46689 * 64.01846 * 1 2 3 30 30 H 1.08998 * 109.47114 * 239.99575 * 2 1 3 31 31 H 1.09007 * 109.47225 * 120.00047 * 2 1 3 32 32 H 0.96994 * 120.00701 * 180.02562 * 8 7 5 33 33 H 1.00904 * 111.00020 * 32.79390 * 13 3 2 34 34 H 1.08998 * 109.46970 * 175.00545 * 16 14 13 35 35 H 1.08994 * 109.46891 * 54.99946 * 16 14 13 36 36 H 1.08003 * 120.00008 * 359.97438 * 18 17 16 37 37 H 1.08002 * 119.99955 * 179.72445 * 19 18 17 38 38 H 1.07997 * 120.00066 * 180.23910 * 20 19 18 39 39 H 1.08000 * 119.99959 * 179.71918 * 21 20 19 40 40 H 1.08007 * 120.00115 * 359.97438 * 22 17 16 41 41 H 1.09001 * 109.47093 * 59.99637 * 26 25 23 42 42 H 1.09006 * 109.47244 * 179.97438 * 26 25 23 43 43 H 1.09002 * 109.47148 * 299.99408 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6107 1.9796 0.8458 5 6 3.5427 1.4440 0.1145 6 1 4.1431 1.8903 -0.6644 7 6 4.1508 0.8757 1.2136 8 7 3.4198 0.3318 2.1620 9 14 6.0135 0.8782 1.3559 10 1 6.5998 1.5468 0.1667 11 1 6.4151 1.6109 2.5835 12 1 6.5061 -0.5207 1.4308 13 7 1.6436 2.1020 -1.2512 14 6 1.6060 3.5614 -1.0882 15 1 2.4184 3.8747 -0.4324 16 6 1.7660 4.2316 -2.4542 17 6 3.1350 3.9272 -3.0058 18 6 3.3303 2.8063 -3.7909 19 6 4.5873 2.5239 -4.2920 20 6 5.6467 3.3683 -4.0170 21 6 5.4514 4.4892 -3.2320 22 6 4.1956 4.7686 -2.7264 23 6 0.2868 3.9654 -0.4818 24 8 -0.6876 3.2677 -0.6357 25 8 0.1943 5.1002 0.2290 26 6 -1.1075 5.4267 0.7830 27 1 -0.3633 -1.0252 0.0719 28 1 -0.3633 0.5749 0.8519 29 1 -0.3632 0.4502 -0.9238 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 3.8476 -0.0677 2.9354 33 1 0.7559 1.7518 -1.5791 34 1 1.6495 5.3099 -2.3457 35 1 1.0063 3.8509 -3.1368 36 1 2.5018 2.1485 -4.0086 37 1 4.7408 1.6458 -4.9017 38 1 6.6279 3.1497 -4.4118 39 1 6.2801 5.1463 -3.0134 40 1 4.0430 5.6444 -2.1130 41 1 -1.4250 4.6317 1.4578 42 1 -1.0433 6.3656 1.3331 43 1 -1.8316 5.5277 -0.0255 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255150043.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:55 Heat of formation + Delta-G solvation = -69.645281 kcal Electronic energy + Delta-G solvation = -24320.495379 eV Core-core repulsion = 20944.319373 eV Total energy + Delta-G solvation = -3376.176007 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.29350 -38.78639 -36.86212 -35.67690 -33.83516 -31.86287 -30.65576 -30.40820 -28.44208 -27.29718 -26.06291 -23.88152 -22.69918 -22.08837 -20.92628 -19.89376 -19.57773 -17.44969 -16.70657 -16.42518 -16.04678 -15.79329 -15.07952 -14.72870 -14.57837 -14.09256 -13.84260 -13.49720 -13.14417 -12.96355 -12.72944 -12.53032 -12.46784 -12.23078 -11.89126 -11.80616 -11.52021 -11.11861 -11.00566 -10.80639 -10.74747 -10.57492 -10.55265 -10.50822 -10.11508 -9.94944 -9.72463 -9.59055 -9.09921 -8.42159 -8.35439 -8.20016 -7.50036 -5.96438 -4.00386 1.80249 1.91349 2.58626 3.10058 3.32128 3.40421 3.46861 4.26987 4.45528 4.88181 5.11046 5.24077 5.28469 5.31542 5.33619 5.35930 5.42349 5.52825 5.61134 5.70441 5.73927 5.92503 5.95907 6.10463 6.20678 6.27589 6.30168 6.46777 6.50700 6.52903 6.66940 6.90302 6.93917 6.96720 7.06046 7.12400 7.15353 7.40679 7.48705 7.76883 7.90195 8.02812 8.21074 8.34894 8.65405 9.08674 9.64806 11.09318 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.009173 B = 0.008422 C = 0.005511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3051.801547 B = 3323.987873 C = 5079.180067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C 0.217 3.783 4 H 0.000 1.000 5 C -0.491 4.491 6 H 0.067 0.933 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.648 5.648 14 C 0.109 3.891 15 H 0.118 0.882 16 C -0.061 4.061 17 C -0.057 4.057 18 C -0.078 4.078 19 C -0.123 4.123 20 C -0.127 4.127 21 C -0.126 4.126 22 C -0.116 4.116 23 C 0.436 3.564 24 O -0.512 6.512 25 O -0.361 6.361 26 C 0.033 3.967 27 H 0.035 0.965 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.042 0.958 31 H 0.099 0.901 32 H 0.258 0.742 33 H 0.333 0.667 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.059 0.941 42 H 0.095 0.905 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.897 9.026 -8.471 12.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C 0.111 3.889 4 H 0.017 0.983 5 C -0.529 4.529 6 H 0.085 0.915 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.719 3.281 10 H -0.195 1.195 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.281 5.281 14 C -0.005 4.005 15 H 0.136 0.864 16 C -0.099 4.099 17 C -0.057 4.057 18 C -0.096 4.096 19 C -0.141 4.141 20 C -0.146 4.146 21 C -0.144 4.144 22 C -0.134 4.134 23 C 0.277 3.723 24 O -0.399 6.399 25 O -0.277 6.277 26 C -0.061 4.061 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.117 0.883 32 H 0.068 0.932 33 H 0.154 0.846 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.139 0.861 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.134 0.866 41 H 0.078 0.922 42 H 0.114 0.886 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.562 8.714 -8.582 12.496 hybrid contribution -0.046 -0.117 1.071 1.078 sum -2.608 8.597 -7.511 11.710 Atomic orbital electron populations 1.21848 0.99243 0.99318 1.00087 1.21735 0.91418 0.99901 1.03103 1.19251 0.95607 0.90280 0.83812 0.98281 1.21226 0.90724 1.36270 1.04709 0.91524 1.24940 0.98032 0.95614 0.95813 1.69887 1.34683 1.39228 1.09740 0.86535 0.86024 0.77590 0.77919 1.19531 1.21315 1.21222 1.61122 1.34164 0.98863 1.33970 1.21591 0.90741 0.92216 0.95938 0.86432 1.20491 0.95092 0.99600 0.94740 1.19411 0.94340 0.95149 0.96785 1.20922 0.97101 0.95539 0.96055 1.21052 0.93240 0.99038 1.00729 1.21010 0.98460 0.95496 0.99584 1.20965 0.96812 0.97879 0.98706 1.20959 0.92779 0.99791 0.99855 1.25920 0.93357 0.77878 0.75176 1.90596 1.39424 1.52176 1.57731 1.86601 1.35615 1.41913 1.63534 1.23174 0.83130 1.01372 0.98431 0.94631 0.94137 0.94137 0.93950 0.88257 0.93168 0.84638 0.90731 0.90799 0.86091 0.86737 0.87017 0.86863 0.86577 0.92181 0.88637 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 9.65 37.16 0.36 -2.71 16 2 C -0.12 -2.93 5.38 -26.73 -0.14 -3.08 16 3 C 0.22 5.31 1.86 -68.87 -0.13 5.18 16 4 H 0.00 -0.01 7.58 -51.93 -0.39 -0.41 16 5 C -0.49 -13.11 8.39 -34.44 -0.29 -13.40 16 6 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 7 C 0.06 1.55 5.29 -17.82 -0.09 1.45 16 8 N -0.90 -25.38 11.29 55.43 0.63 -24.76 16 9 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 N -0.65 -13.24 5.37 -102.17 -0.55 -13.79 16 14 C 0.11 1.99 2.31 -68.86 -0.16 1.83 16 15 H 0.12 2.38 7.59 -51.93 -0.39 1.98 16 16 C -0.06 -0.91 5.01 -27.88 -0.14 -1.05 16 17 C -0.06 -0.90 4.95 -104.62 -0.52 -1.41 16 18 C -0.08 -1.24 9.31 -39.58 -0.37 -1.61 16 19 C -0.12 -1.86 10.05 -39.58 -0.40 -2.25 16 20 C -0.13 -1.87 10.05 -39.58 -0.40 -2.26 16 21 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 22 C -0.12 -1.75 9.70 -39.58 -0.38 -2.14 16 23 C 0.44 7.99 6.71 36.01 0.24 8.23 16 24 O -0.51 -10.20 15.64 -18.75 -0.29 -10.49 16 25 O -0.36 -5.97 10.56 -39.24 -0.41 -6.38 16 26 C 0.03 0.43 10.56 101.05 1.07 1.49 16 27 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.04 0.79 6.55 -51.93 -0.34 0.45 16 30 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.10 2.66 5.96 -51.92 -0.31 2.35 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.33 6.68 5.43 -39.29 -0.21 6.46 16 34 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 35 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 36 H 0.12 1.85 8.06 -52.48 -0.42 1.43 16 37 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 38 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 39 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 40 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 41 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 42 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 LS Contribution 357.52 15.07 5.39 5.39 Total: -1.00 -29.83 357.52 -8.70 -38.54 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -6.69 Total: 9.01 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -1.75 Total: -13.97 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.08 Total: -38.55 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.71 Total: -16.87 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.83 -8.70 -38.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255150043.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.110 kcal (2) G-P(sol) polarization free energy of solvation -29.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds