Wall clock time and date at job start Tue Mar 31 2020 06:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47234 * 2 1 4 4 H 1.09006 * 109.46756 * 55.38224 * 3 2 1 5 5 C 1.50700 * 109.47015 * 175.37634 * 3 2 1 6 6 H 1.08000 * 119.99581 * 120.00267 * 5 3 2 7 7 C 1.37872 * 120.00128 * 299.99896 * 5 3 2 8 8 N 1.31515 * 120.00677 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99867 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47128 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46972 * 120.00359 * 9 7 5 12 12 H 1.48499 * 109.47127 * 240.00474 * 9 7 5 13 13 N 1.46890 * 109.47146 * 295.37942 * 3 2 1 14 14 C 1.46903 * 111.00223 * 156.74489 * 13 3 2 15 15 H 1.09002 * 109.46550 * 36.88627 * 14 13 3 16 16 C 1.52997 * 109.47439 * 156.88806 * 14 13 3 17 17 C 1.50704 * 109.46932 * 295.00135 * 16 14 13 18 18 C 1.38234 * 119.99836 * 90.00118 * 17 16 14 19 19 C 1.38234 * 119.99696 * 180.28101 * 18 17 16 20 20 C 1.38236 * 120.00165 * 359.48016 * 19 18 17 21 21 C 1.38234 * 119.99934 * 0.51986 * 20 19 18 22 22 C 1.38230 * 120.00091 * 270.02277 * 17 16 14 23 23 C 1.50700 * 109.47335 * 276.89201 * 14 13 3 24 24 O 1.20825 * 119.99600 * 333.99127 * 23 14 13 25 25 O 1.34223 * 120.00456 * 153.99683 * 23 14 13 26 26 C 1.45199 * 117.00207 * 179.97438 * 25 23 14 27 27 H 1.09004 * 109.46963 * 184.01371 * 1 2 3 28 28 H 1.09003 * 109.47083 * 304.01333 * 1 2 3 29 29 H 1.08994 * 109.46689 * 64.01846 * 1 2 3 30 30 H 1.08998 * 109.47114 * 239.99575 * 2 1 3 31 31 H 1.09007 * 109.47225 * 120.00047 * 2 1 3 32 32 H 0.96994 * 120.00701 * 180.02562 * 8 7 5 33 33 H 1.00904 * 111.00020 * 32.79390 * 13 3 2 34 34 H 1.08998 * 109.46970 * 175.00545 * 16 14 13 35 35 H 1.08994 * 109.46891 * 54.99946 * 16 14 13 36 36 H 1.08003 * 120.00008 * 359.97438 * 18 17 16 37 37 H 1.08002 * 119.99955 * 179.72445 * 19 18 17 38 38 H 1.07997 * 120.00066 * 180.23910 * 20 19 18 39 39 H 1.08000 * 119.99959 * 179.71918 * 21 20 19 40 40 H 1.08007 * 120.00115 * 359.97438 * 22 17 16 41 41 H 1.09001 * 109.47093 * 59.99637 * 26 25 23 42 42 H 1.09006 * 109.47244 * 179.97438 * 26 25 23 43 43 H 1.09002 * 109.47148 * 299.99408 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6107 1.9796 0.8458 5 6 3.5427 1.4440 0.1145 6 1 4.1431 1.8903 -0.6644 7 6 4.1508 0.8757 1.2136 8 7 3.4198 0.3318 2.1620 9 14 6.0135 0.8782 1.3559 10 1 6.5998 1.5468 0.1667 11 1 6.4151 1.6109 2.5835 12 1 6.5061 -0.5207 1.4308 13 7 1.6436 2.1020 -1.2512 14 6 1.6060 3.5614 -1.0882 15 1 2.4184 3.8747 -0.4324 16 6 1.7660 4.2316 -2.4542 17 6 3.1350 3.9272 -3.0058 18 6 3.3303 2.8063 -3.7909 19 6 4.5873 2.5239 -4.2920 20 6 5.6467 3.3683 -4.0170 21 6 5.4514 4.4892 -3.2320 22 6 4.1956 4.7686 -2.7264 23 6 0.2868 3.9654 -0.4818 24 8 -0.6876 3.2677 -0.6357 25 8 0.1943 5.1002 0.2290 26 6 -1.1075 5.4267 0.7830 27 1 -0.3633 -1.0252 0.0719 28 1 -0.3633 0.5749 0.8519 29 1 -0.3632 0.4502 -0.9238 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 3.8476 -0.0677 2.9354 33 1 0.7559 1.7518 -1.5791 34 1 1.6495 5.3099 -2.3457 35 1 1.0063 3.8509 -3.1368 36 1 2.5018 2.1485 -4.0086 37 1 4.7408 1.6458 -4.9017 38 1 6.6279 3.1497 -4.4118 39 1 6.2801 5.1463 -3.0134 40 1 4.0430 5.6444 -2.1130 41 1 -1.4250 4.6317 1.4578 42 1 -1.0433 6.3656 1.3331 43 1 -1.8316 5.5277 -0.0255 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255150043.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:54 Heat of formation + Delta-G solvation = -85.331935 kcal Electronic energy + Delta-G solvation = -24321.175604 eV Core-core repulsion = 20944.319373 eV Total energy + Delta-G solvation = -3376.856231 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.71636 -39.95674 -38.40690 -37.23482 -35.39998 -33.77924 -32.14696 -31.54641 -29.90851 -28.60952 -27.80224 -25.28406 -24.52775 -23.24393 -22.17851 -21.47105 -21.26931 -18.92774 -18.35191 -17.93581 -17.44659 -17.15210 -16.82804 -16.10127 -15.88259 -15.59354 -15.50315 -14.87980 -14.61205 -14.33048 -14.19891 -14.01975 -13.68671 -13.60309 -13.51887 -13.18632 -12.97519 -12.88190 -12.63824 -12.52054 -12.33000 -11.99103 -11.97313 -11.81357 -11.65538 -11.61200 -11.52577 -11.44606 -11.00353 -10.43758 -9.58448 -9.38983 -9.24502 -8.05626 -6.15856 0.62932 0.75561 1.14413 1.40105 1.43281 1.55121 1.81209 2.45121 3.09705 3.20675 3.38953 3.82057 4.07570 4.14386 4.26439 4.28278 4.31554 4.34596 4.39041 4.45652 4.49606 4.54796 4.64556 4.68030 4.69525 4.81932 4.94287 4.99993 5.04925 5.19034 5.29695 5.32257 5.35917 5.38919 5.53487 5.75536 5.76377 5.82074 5.86599 5.95736 6.24395 6.35545 6.37300 6.70851 6.82235 6.97784 7.52577 8.98916 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.009173 B = 0.008422 C = 0.005511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3051.801547 B = 3323.987873 C = 5079.180067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.119 4.119 3 C 0.229 3.771 4 H -0.039 1.039 5 C -0.495 4.495 6 H 0.058 0.942 7 C 0.011 3.989 8 N -0.922 5.922 9 Si 0.949 3.051 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.641 5.641 14 C 0.110 3.890 15 H 0.096 0.904 16 C -0.051 4.051 17 C -0.072 4.072 18 C -0.095 4.095 19 C -0.136 4.136 20 C -0.136 4.136 21 C -0.135 4.135 22 C -0.128 4.128 23 C 0.438 3.562 24 O -0.531 6.531 25 O -0.366 6.366 26 C 0.026 3.974 27 H 0.056 0.944 28 H 0.024 0.976 29 H 0.053 0.947 30 H 0.042 0.958 31 H 0.069 0.931 32 H 0.258 0.742 33 H 0.335 0.665 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.120 0.880 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.131 0.869 41 H 0.048 0.952 42 H 0.133 0.867 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.512 10.054 -9.333 13.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.157 4.157 3 C 0.121 3.879 4 H -0.021 1.021 5 C -0.534 4.534 6 H 0.076 0.924 7 C -0.187 4.187 8 N -0.563 5.563 9 Si 0.776 3.224 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.274 5.274 14 C -0.003 4.003 15 H 0.114 0.886 16 C -0.089 4.089 17 C -0.072 4.072 18 C -0.113 4.113 19 C -0.154 4.154 20 C -0.154 4.154 21 C -0.153 4.153 22 C -0.146 4.146 23 C 0.280 3.720 24 O -0.420 6.420 25 O -0.281 6.281 26 C -0.067 4.067 27 H 0.075 0.925 28 H 0.043 0.957 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.157 0.843 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.138 0.862 37 H 0.148 0.852 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.149 0.851 41 H 0.067 0.933 42 H 0.151 0.849 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.182 9.767 -9.454 13.767 hybrid contribution -0.195 -0.366 1.359 1.420 sum -2.376 9.401 -8.095 12.632 Atomic orbital electron populations 1.21688 0.96827 1.00553 1.00006 1.21580 0.93538 0.99109 1.01500 1.18949 0.94357 0.90523 0.84092 1.02146 1.21394 0.91912 1.35750 1.04340 0.92387 1.25627 1.01876 0.95524 0.95678 1.70016 1.36128 1.39959 1.10155 0.85627 0.81428 0.77519 0.77846 1.19155 1.21035 1.20976 1.61014 1.34420 1.00259 1.31711 1.21556 0.90148 0.90996 0.97622 0.88633 1.20456 0.95175 1.00639 0.92590 1.19560 0.94867 0.95527 0.97229 1.21082 0.97643 0.95879 0.96731 1.21340 0.93209 0.99831 1.00973 1.21358 0.99358 0.95298 0.99342 1.21323 0.97352 0.98263 0.98342 1.21253 0.92966 1.00321 1.00053 1.25734 0.92933 0.78244 0.75116 1.90580 1.39993 1.52857 1.58611 1.86564 1.37743 1.40810 1.63007 1.23526 0.81697 1.02629 0.98875 0.92485 0.95678 0.92847 0.93950 0.91260 0.93246 0.84332 0.88392 0.89920 0.86166 0.85236 0.84840 0.84694 0.85096 0.93296 0.84936 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.50 9.65 71.98 0.69 -4.80 16 2 C -0.12 -5.73 5.38 30.59 0.16 -5.56 16 3 C 0.23 11.40 1.86 44.17 0.08 11.48 16 4 H -0.04 -2.22 7.58 -2.38 -0.02 -2.24 16 5 C -0.50 -26.83 8.39 25.60 0.21 -26.61 16 6 H 0.06 3.20 7.81 -2.91 -0.02 3.17 16 7 C 0.01 0.60 5.29 84.65 0.45 1.05 16 8 N -0.92 -53.20 11.29 21.45 0.24 -52.96 16 9 Si 0.95 44.21 29.54 68.60 2.03 46.23 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 13 N -0.64 -26.33 5.37 -477.17 -2.56 -28.90 16 14 C 0.11 4.02 2.31 44.17 0.10 4.12 16 15 H 0.10 3.93 7.59 -2.39 -0.02 3.91 16 16 C -0.05 -1.46 5.01 29.85 0.15 -1.31 16 17 C -0.07 -2.20 4.95 -19.87 -0.10 -2.30 16 18 C -0.10 -2.97 9.31 22.27 0.21 -2.76 16 19 C -0.14 -3.95 10.05 22.27 0.22 -3.73 16 20 C -0.14 -3.73 10.05 22.27 0.22 -3.51 16 21 C -0.13 -3.71 10.05 22.27 0.22 -3.48 16 22 C -0.13 -3.70 9.70 22.27 0.22 -3.49 16 23 C 0.44 15.89 6.71 71.24 0.48 16.37 16 24 O -0.53 -20.94 15.64 21.97 0.34 -20.59 16 25 O -0.37 -11.73 10.56 -51.35 -0.54 -12.28 16 26 C 0.03 0.62 10.56 113.37 1.20 1.82 16 27 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 28 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.05 2.05 6.55 -2.39 -0.02 2.03 16 30 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.07 3.79 5.96 -2.38 -0.01 3.78 16 32 H 0.26 14.28 8.31 -92.71 -0.77 13.50 16 33 H 0.34 13.40 5.43 -89.69 -0.49 12.91 16 34 H 0.10 2.33 8.09 -2.39 -0.02 2.31 16 35 H 0.08 2.22 8.08 -2.39 -0.02 2.20 16 36 H 0.12 3.64 8.06 -2.91 -0.02 3.62 16 37 H 0.13 3.24 8.06 -2.91 -0.02 3.22 16 38 H 0.13 2.99 8.06 -2.91 -0.02 2.96 16 39 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 40 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 41 H 0.05 1.28 8.13 -2.39 -0.02 1.26 16 42 H 0.13 2.16 8.14 -2.38 -0.02 2.14 16 43 H 0.07 1.52 8.13 -2.39 -0.02 1.50 16 Total: -1.00 -64.28 357.52 4.53 -59.75 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: 0.50 Total: 31.47 kcal Atomic # 6 Polarization: -27.25 SS G_CDS: 4.53 Total: -22.72 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -2.32 Total: -81.86 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -0.20 Total: -32.87 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -64.28 4.53 -59.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255150043.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.584 kcal (2) G-P(sol) polarization free energy of solvation -64.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds