Wall clock time and date at job start Tue Mar 31 2020 06:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47095 * 2 1 4 4 H 1.08995 * 109.47180 * 175.48853 * 3 2 1 5 5 C 1.50703 * 109.46928 * 55.48393 * 3 2 1 6 6 H 1.08002 * 119.99743 * 239.99397 * 5 3 2 7 7 C 1.37876 * 120.00128 * 60.00398 * 5 3 2 8 8 N 1.31519 * 119.99693 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00186 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46998 * 59.99843 * 9 7 5 11 11 H 1.48502 * 109.47530 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47547 * 299.99886 * 9 7 5 13 13 N 1.46897 * 109.46900 * 295.48538 * 3 2 1 14 14 C 1.46896 * 111.00282 * 273.16915 * 13 3 2 15 15 H 1.09000 * 109.46885 * 37.05373 * 14 13 3 16 16 C 1.52996 * 109.47624 * 157.05583 * 14 13 3 17 17 C 1.50694 * 109.46887 * 295.00301 * 16 14 13 18 18 C 1.38231 * 119.99982 * 269.72100 * 17 16 14 19 19 C 1.38237 * 120.00130 * 179.76713 * 18 17 16 20 20 C 1.38230 * 119.99844 * 0.50806 * 19 18 17 21 21 C 1.38227 * 120.00283 * 359.75022 * 20 19 18 22 22 C 1.38234 * 119.99855 * 359.97438 * 21 20 19 23 23 C 1.50706 * 109.46999 * 277.05704 * 14 13 3 24 24 O 1.20825 * 119.99763 * 359.97438 * 23 14 13 25 25 O 1.34229 * 120.00088 * 179.97438 * 23 14 13 26 26 C 1.45200 * 117.00074 * 180.02562 * 25 23 14 27 27 H 1.09004 * 109.47182 * 174.93677 * 1 2 3 28 28 H 1.08994 * 109.47248 * 54.93417 * 1 2 3 29 29 H 1.09000 * 109.47175 * 294.93571 * 1 2 3 30 30 H 1.09005 * 109.47148 * 119.99574 * 2 1 3 31 31 H 1.09001 * 109.47182 * 240.00005 * 2 1 3 32 32 H 0.97008 * 119.99758 * 180.02562 * 8 7 5 33 33 H 1.00911 * 110.99812 * 149.21227 * 13 3 2 34 34 H 1.09008 * 109.46718 * 54.99787 * 16 14 13 35 35 H 1.08996 * 109.47314 * 174.99857 * 16 14 13 36 36 H 1.08004 * 120.00175 * 359.97438 * 18 17 16 37 37 H 1.08007 * 120.00104 * 180.23153 * 19 18 17 38 38 H 1.07999 * 119.99827 * 179.72461 * 20 19 18 39 39 H 1.08000 * 120.00369 * 179.97438 * 21 20 19 40 40 H 1.07997 * 120.00217 * 179.97438 * 22 21 20 41 41 H 1.09000 * 109.46918 * 180.02562 * 26 25 23 42 42 H 1.09000 * 109.46928 * 299.99991 * 26 25 23 43 43 H 1.08999 * 109.47154 * 60.00113 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1269 1.4436 0.0808 5 6 1.4484 2.1845 1.1707 6 1 0.8374 3.0591 1.0028 7 6 1.6871 1.7468 2.4562 8 7 2.4309 0.6815 2.6606 9 14 0.9544 2.6668 3.9074 10 1 -0.5265 2.6659 3.7973 11 1 1.3568 1.9990 5.1712 12 1 1.4499 4.0668 3.9073 13 7 1.6413 2.1028 -1.2502 14 6 2.6297 1.8636 -2.3103 15 1 3.0174 0.8486 -2.2233 16 6 1.9649 2.0402 -3.6769 17 6 0.9134 0.9773 -3.8650 18 6 1.2482 -0.2305 -4.4480 19 6 0.2847 -1.2075 -4.6162 20 6 -1.0158 -0.9726 -4.2110 21 6 -1.3518 0.2372 -3.6328 22 6 -0.3871 1.2120 -3.4595 23 6 3.7628 2.8477 -2.1719 24 8 3.7480 3.6647 -1.2819 25 8 4.7882 2.8165 -3.0375 26 6 5.8446 3.7937 -2.8434 27 1 -0.3634 -1.0237 -0.0907 28 1 -0.3633 0.5904 -0.8411 29 1 -0.3633 0.4333 0.9319 30 1 1.8933 -0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 2.5986 0.3734 3.5650 33 1 1.4966 3.0911 -1.1070 34 1 1.4999 3.0247 -3.7302 35 1 2.7167 1.9505 -4.4610 36 1 2.2632 -0.4123 -4.7691 37 1 0.5471 -2.1526 -5.0683 38 1 -1.7695 -1.7341 -4.3464 39 1 -2.3680 0.4209 -3.3166 40 1 -0.6497 2.1574 -3.0081 41 1 6.6089 3.6593 -3.6089 42 1 5.4284 4.7983 -2.9184 43 1 6.2892 3.6571 -1.8577 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255150046.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:58 Heat of formation + Delta-G solvation = -67.420868 kcal Electronic energy + Delta-G solvation = -24309.940800 eV Core-core repulsion = 20933.861251 eV Total energy + Delta-G solvation = -3376.079549 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.27703 -38.90068 -36.83433 -35.62547 -33.92276 -31.68605 -30.55921 -30.46809 -28.55405 -27.21024 -25.68780 -23.82817 -23.19171 -22.18654 -20.95415 -20.26559 -18.95033 -17.46617 -16.83376 -16.29723 -16.02294 -15.88035 -15.06257 -14.79013 -14.67277 -13.83959 -13.65305 -13.61717 -13.16324 -13.04350 -12.86207 -12.58138 -12.53180 -12.00097 -11.87665 -11.75579 -11.55864 -11.06311 -10.86590 -10.83381 -10.75405 -10.61205 -10.52125 -10.33749 -10.24981 -9.93661 -9.71474 -9.34827 -8.77617 -8.53333 -8.45077 -8.30614 -7.49581 -5.97013 -4.00354 1.68993 1.78774 2.62849 3.08233 3.34901 3.38683 3.41896 4.14840 4.44246 4.86209 5.05402 5.22954 5.24709 5.25841 5.31604 5.34414 5.36091 5.41454 5.54969 5.59940 5.69095 5.82546 5.88115 6.03819 6.11770 6.36853 6.41972 6.55841 6.68462 6.74695 6.78644 6.86025 6.89986 7.02435 7.22883 7.28886 7.36672 7.51298 7.77221 7.79543 7.86399 8.12867 8.19239 8.32831 8.60276 9.03867 9.62549 11.09692 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011364 B = 0.006827 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.379510 B = 4100.474905 C = 5947.986425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.099 4.099 3 C 0.218 3.782 4 H 0.002 0.998 5 C -0.504 4.504 6 H 0.058 0.942 7 C 0.064 3.936 8 N -0.891 5.891 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.646 5.646 14 C 0.105 3.895 15 H 0.109 0.891 16 C -0.064 4.064 17 C -0.059 4.059 18 C -0.120 4.120 19 C -0.126 4.126 20 C -0.127 4.127 21 C -0.122 4.122 22 C -0.079 4.079 23 C 0.426 3.574 24 O -0.491 6.491 25 O -0.367 6.367 26 C 0.034 3.966 27 H 0.010 0.990 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.083 0.917 31 H 0.009 0.991 32 H 0.260 0.740 33 H 0.343 0.657 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.123 0.877 41 H 0.094 0.906 42 H 0.058 0.942 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.351 -0.188 -15.288 15.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.137 4.137 3 C 0.111 3.889 4 H 0.019 0.981 5 C -0.543 4.543 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.530 5.530 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.278 5.278 14 C -0.009 4.009 15 H 0.127 0.873 16 C -0.102 4.102 17 C -0.060 4.060 18 C -0.138 4.138 19 C -0.144 4.144 20 C -0.145 4.145 21 C -0.140 4.140 22 C -0.097 4.097 23 C 0.265 3.735 24 O -0.376 6.376 25 O -0.283 6.283 26 C -0.061 4.061 27 H 0.029 0.971 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.028 0.972 32 H 0.070 0.930 33 H 0.163 0.837 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.133 0.867 40 H 0.141 0.859 41 H 0.113 0.887 42 H 0.076 0.924 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.675 -0.538 -15.030 15.054 hybrid contribution 0.631 1.103 1.471 1.944 sum -0.044 0.565 -13.559 13.570 Atomic orbital electron populations 1.21435 0.97279 0.97103 1.01600 1.21409 0.95388 0.97839 0.99071 1.19165 0.93842 0.91602 0.84293 0.98055 1.21039 1.31295 1.11648 0.90323 0.92399 1.24836 0.95205 0.95035 0.98686 1.69883 1.38330 1.23618 1.21125 0.86649 0.79560 0.79933 0.81795 1.20248 1.21431 1.20424 1.61176 1.39222 1.18065 1.09293 1.21671 0.86900 0.97103 0.95224 0.87287 1.20547 0.96722 0.98073 0.94868 1.19502 0.94261 0.94717 0.97471 1.20980 0.99039 0.93508 1.00254 1.20976 0.93505 0.98758 1.01197 1.21018 0.96354 0.97184 0.99987 1.21082 0.99358 0.93991 0.99536 1.20975 0.92324 0.99554 0.96845 1.25845 0.83400 0.85202 0.79029 1.90715 1.77578 1.37204 1.32145 1.86559 1.31537 1.55701 1.54551 1.23157 0.88772 0.91545 1.02600 0.97111 0.93100 0.93057 0.89902 0.97188 0.93020 0.83704 0.90769 0.90264 0.86609 0.86842 0.86955 0.86665 0.85920 0.88740 0.92361 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 9.43 37.16 0.35 -2.26 16 2 C -0.10 -2.36 5.55 -26.73 -0.15 -2.50 16 3 C 0.22 5.36 1.88 -68.86 -0.13 5.23 16 4 H 0.00 0.05 7.45 -51.93 -0.39 -0.34 16 5 C -0.50 -13.66 7.21 -34.44 -0.25 -13.91 16 6 H 0.06 1.57 7.59 -52.49 -0.40 1.17 16 7 C 0.06 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.89 -25.54 11.37 55.43 0.63 -24.91 16 9 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.65 -12.98 4.63 -102.17 -0.47 -13.46 16 14 C 0.10 1.81 2.31 -68.87 -0.16 1.65 16 15 H 0.11 1.97 7.23 -51.93 -0.38 1.59 16 16 C -0.06 -0.88 4.99 -27.89 -0.14 -1.02 16 17 C -0.06 -0.84 4.95 -104.63 -0.52 -1.36 16 18 C -0.12 -1.59 9.70 -39.58 -0.38 -1.98 16 19 C -0.13 -1.61 10.05 -39.58 -0.40 -2.00 16 20 C -0.13 -1.63 10.05 -39.59 -0.40 -2.03 16 21 C -0.12 -1.65 10.05 -39.59 -0.40 -2.05 16 22 C -0.08 -1.14 8.40 -39.58 -0.33 -1.48 16 23 C 0.43 7.74 6.89 36.01 0.25 7.99 16 24 O -0.49 -10.67 15.27 -18.75 -0.29 -10.95 16 25 O -0.37 -5.68 10.37 -39.25 -0.41 -6.08 16 26 C 0.03 0.42 10.56 101.05 1.07 1.49 16 27 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 28 H 0.05 1.07 6.67 -51.93 -0.35 0.72 16 29 H 0.05 1.25 7.28 -51.93 -0.38 0.87 16 30 H 0.08 2.23 6.20 -51.93 -0.32 1.91 16 31 H 0.01 0.22 7.50 -51.93 -0.39 -0.17 16 32 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.34 7.21 7.28 -39.29 -0.29 6.93 16 34 H 0.07 0.98 8.09 -51.92 -0.42 0.56 16 35 H 0.08 0.95 7.94 -51.93 -0.41 0.54 16 36 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 37 H 0.11 1.19 8.06 -52.48 -0.42 0.77 16 38 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 40 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 43 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 LS Contribution 354.17 15.07 5.34 5.34 Total: -1.00 -30.37 354.17 -8.56 -38.92 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -6.65 Total: 7.04 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -1.68 Total: -12.56 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.16 Total: -38.37 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.69 Total: -17.04 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.37 -8.56 -38.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255150046.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.501 kcal (2) G-P(sol) polarization free energy of solvation -30.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds