Wall clock time and date at job start Tue Mar 31 2020 06:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47095 * 2 1 4 4 H 1.08995 * 109.47180 * 175.48853 * 3 2 1 5 5 C 1.50703 * 109.46928 * 55.48393 * 3 2 1 6 6 H 1.08002 * 119.99743 * 239.99397 * 5 3 2 7 7 C 1.37876 * 120.00128 * 60.00398 * 5 3 2 8 8 N 1.31519 * 119.99693 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00186 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46998 * 59.99843 * 9 7 5 11 11 H 1.48502 * 109.47530 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47547 * 299.99886 * 9 7 5 13 13 N 1.46897 * 109.46900 * 295.48538 * 3 2 1 14 14 C 1.46896 * 111.00282 * 273.16915 * 13 3 2 15 15 H 1.09000 * 109.46885 * 37.05373 * 14 13 3 16 16 C 1.52996 * 109.47624 * 157.05583 * 14 13 3 17 17 C 1.50694 * 109.46887 * 295.00301 * 16 14 13 18 18 C 1.38231 * 119.99982 * 269.72100 * 17 16 14 19 19 C 1.38237 * 120.00130 * 179.76713 * 18 17 16 20 20 C 1.38230 * 119.99844 * 0.50806 * 19 18 17 21 21 C 1.38227 * 120.00283 * 359.75022 * 20 19 18 22 22 C 1.38234 * 119.99855 * 359.97438 * 21 20 19 23 23 C 1.50706 * 109.46999 * 277.05704 * 14 13 3 24 24 O 1.20825 * 119.99763 * 359.97438 * 23 14 13 25 25 O 1.34229 * 120.00088 * 179.97438 * 23 14 13 26 26 C 1.45200 * 117.00074 * 180.02562 * 25 23 14 27 27 H 1.09004 * 109.47182 * 174.93677 * 1 2 3 28 28 H 1.08994 * 109.47248 * 54.93417 * 1 2 3 29 29 H 1.09000 * 109.47175 * 294.93571 * 1 2 3 30 30 H 1.09005 * 109.47148 * 119.99574 * 2 1 3 31 31 H 1.09001 * 109.47182 * 240.00005 * 2 1 3 32 32 H 0.97008 * 119.99758 * 180.02562 * 8 7 5 33 33 H 1.00911 * 110.99812 * 149.21227 * 13 3 2 34 34 H 1.09008 * 109.46718 * 54.99787 * 16 14 13 35 35 H 1.08996 * 109.47314 * 174.99857 * 16 14 13 36 36 H 1.08004 * 120.00175 * 359.97438 * 18 17 16 37 37 H 1.08007 * 120.00104 * 180.23153 * 19 18 17 38 38 H 1.07999 * 119.99827 * 179.72461 * 20 19 18 39 39 H 1.08000 * 120.00369 * 179.97438 * 21 20 19 40 40 H 1.07997 * 120.00217 * 179.97438 * 22 21 20 41 41 H 1.09000 * 109.46918 * 180.02562 * 26 25 23 42 42 H 1.09000 * 109.46928 * 299.99991 * 26 25 23 43 43 H 1.08999 * 109.47154 * 60.00113 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1269 1.4436 0.0808 5 6 1.4484 2.1845 1.1707 6 1 0.8374 3.0591 1.0028 7 6 1.6871 1.7468 2.4562 8 7 2.4309 0.6815 2.6606 9 14 0.9544 2.6668 3.9074 10 1 -0.5265 2.6659 3.7973 11 1 1.3568 1.9990 5.1712 12 1 1.4499 4.0668 3.9073 13 7 1.6413 2.1028 -1.2502 14 6 2.6297 1.8636 -2.3103 15 1 3.0174 0.8486 -2.2233 16 6 1.9649 2.0402 -3.6769 17 6 0.9134 0.9773 -3.8650 18 6 1.2482 -0.2305 -4.4480 19 6 0.2847 -1.2075 -4.6162 20 6 -1.0158 -0.9726 -4.2110 21 6 -1.3518 0.2372 -3.6328 22 6 -0.3871 1.2120 -3.4595 23 6 3.7628 2.8477 -2.1719 24 8 3.7480 3.6647 -1.2819 25 8 4.7882 2.8165 -3.0375 26 6 5.8446 3.7937 -2.8434 27 1 -0.3634 -1.0237 -0.0907 28 1 -0.3633 0.5904 -0.8411 29 1 -0.3633 0.4333 0.9319 30 1 1.8933 -0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 2.5986 0.3734 3.5650 33 1 1.4966 3.0911 -1.1070 34 1 1.4999 3.0247 -3.7302 35 1 2.7167 1.9505 -4.4610 36 1 2.2632 -0.4123 -4.7691 37 1 0.5471 -2.1526 -5.0683 38 1 -1.7695 -1.7341 -4.3464 39 1 -2.3680 0.4209 -3.3166 40 1 -0.6497 2.1574 -3.0081 41 1 6.6089 3.6593 -3.6089 42 1 5.4284 4.7983 -2.9184 43 1 6.2892 3.6571 -1.8577 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255150046.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:57 Heat of formation + Delta-G solvation = -83.835532 kcal Electronic energy + Delta-G solvation = -24310.652594 eV Core-core repulsion = 20933.861251 eV Total energy + Delta-G solvation = -3376.791342 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.70127 -39.95829 -38.35228 -37.20712 -35.49722 -33.47876 -32.06828 -31.53101 -29.97650 -28.44701 -27.47201 -25.26217 -24.98574 -23.20301 -22.16992 -21.66992 -20.73505 -18.97357 -18.34719 -17.74846 -17.44682 -17.15286 -16.85032 -16.00709 -15.81601 -15.51911 -15.29301 -15.00432 -14.53122 -14.47480 -14.09444 -13.90117 -13.80222 -13.67487 -13.26365 -13.13780 -12.94983 -12.79302 -12.52625 -12.49116 -12.25581 -12.10704 -11.93552 -11.79530 -11.62219 -11.58017 -11.40841 -11.25913 -10.80790 -10.54980 -9.54926 -9.37511 -9.22820 -8.09068 -6.18547 0.65514 0.77340 1.18431 1.39920 1.40970 1.47883 1.80647 2.42093 3.11134 3.20383 3.41639 3.81800 4.07508 4.15207 4.25020 4.30530 4.31555 4.35809 4.39235 4.50859 4.64954 4.66766 4.71193 4.83656 4.85443 4.97444 5.00490 5.02349 5.30853 5.32264 5.38759 5.40606 5.42148 5.58061 5.72312 5.79294 5.84377 5.85636 5.90936 5.99587 6.26239 6.34745 6.37729 6.62473 6.78916 6.98012 7.47868 8.96395 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011364 B = 0.006827 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.379510 B = 4100.474905 C = 5947.986425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.089 4.089 3 C 0.231 3.769 4 H -0.042 1.042 5 C -0.515 4.515 6 H 0.053 0.947 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.949 3.051 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.279 1.279 13 N -0.634 5.634 14 C 0.106 3.894 15 H 0.103 0.897 16 C -0.052 4.052 17 C -0.074 4.074 18 C -0.127 4.127 19 C -0.132 4.132 20 C -0.132 4.132 21 C -0.133 4.133 22 C -0.096 4.096 23 C 0.430 3.570 24 O -0.534 6.534 25 O -0.360 6.360 26 C 0.027 3.973 27 H 0.027 0.973 28 H 0.063 0.937 29 H 0.026 0.974 30 H 0.051 0.949 31 H 0.022 0.978 32 H 0.259 0.741 33 H 0.337 0.663 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.132 0.868 37 H 0.137 0.863 38 H 0.134 0.866 39 H 0.127 0.873 40 H 0.116 0.884 41 H 0.138 0.862 42 H 0.061 0.939 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.768 -0.536 -16.977 17.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.128 4.128 3 C 0.122 3.878 4 H -0.024 1.024 5 C -0.554 4.554 6 H 0.071 0.929 7 C -0.181 4.181 8 N -0.557 5.557 9 Si 0.775 3.225 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.204 1.204 13 N -0.265 5.265 14 C -0.008 4.008 15 H 0.121 0.879 16 C -0.089 4.089 17 C -0.074 4.074 18 C -0.145 4.145 19 C -0.150 4.150 20 C -0.150 4.150 21 C -0.151 4.151 22 C -0.114 4.114 23 C 0.272 3.728 24 O -0.422 6.422 25 O -0.276 6.276 26 C -0.067 4.067 27 H 0.046 0.954 28 H 0.082 0.918 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.041 0.959 32 H 0.068 0.932 33 H 0.156 0.844 34 H 0.097 0.903 35 H 0.121 0.879 36 H 0.150 0.850 37 H 0.154 0.846 38 H 0.152 0.848 39 H 0.145 0.855 40 H 0.134 0.866 41 H 0.156 0.844 42 H 0.080 0.920 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.087 -0.891 -16.758 16.816 hybrid contribution 0.848 1.203 1.894 2.399 sum -0.239 0.313 -14.864 14.869 Atomic orbital electron populations 1.21277 0.95787 0.98156 1.00759 1.21228 0.96500 0.97022 0.98034 1.18849 0.90916 0.92277 0.85714 1.02438 1.21339 1.30993 1.11589 0.91489 0.92859 1.25550 0.95664 0.95797 1.01134 1.70019 1.39412 1.24814 1.21425 0.85752 0.79212 0.78583 0.78937 1.19317 1.21095 1.20447 1.61078 1.40262 1.17244 1.07869 1.21733 0.86596 0.96401 0.96027 0.87926 1.20487 0.97108 0.98472 0.92881 1.19575 0.94152 0.95294 0.98350 1.21253 1.00139 0.93212 0.99908 1.21322 0.93349 0.99551 1.00732 1.21342 0.97104 0.97323 0.99213 1.21308 0.99836 0.94235 0.99746 1.21062 0.92972 0.99761 0.97589 1.25871 0.83977 0.84472 0.78489 1.90700 1.78547 1.39075 1.33906 1.86528 1.31385 1.56357 1.53284 1.23502 0.88584 0.91073 1.03533 0.95426 0.91814 0.95488 0.93081 0.95942 0.93180 0.84366 0.90286 0.87928 0.84967 0.84562 0.84845 0.85548 0.86612 0.84397 0.91982 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.52 9.43 71.98 0.68 -3.85 16 2 C -0.09 -4.31 5.55 30.59 0.17 -4.14 16 3 C 0.23 11.61 1.88 44.17 0.08 11.69 16 4 H -0.04 -2.45 7.45 -2.39 -0.02 -2.47 16 5 C -0.52 -28.50 7.21 25.60 0.18 -28.31 16 6 H 0.05 2.93 7.59 -2.91 -0.02 2.91 16 7 C 0.02 0.98 5.29 84.65 0.45 1.43 16 8 N -0.92 -53.83 11.37 21.45 0.24 -53.59 16 9 Si 0.95 44.96 29.54 68.60 2.03 46.99 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 13 N -0.63 -25.74 4.63 -477.16 -2.21 -27.95 16 14 C 0.11 3.61 2.31 44.17 0.10 3.71 16 15 H 0.10 3.67 7.23 -2.39 -0.02 3.65 16 16 C -0.05 -1.34 4.99 29.85 0.15 -1.19 16 17 C -0.07 -1.97 4.95 -19.87 -0.10 -2.07 16 18 C -0.13 -3.08 9.70 22.27 0.22 -2.86 16 19 C -0.13 -2.98 10.05 22.27 0.22 -2.76 16 20 C -0.13 -3.05 10.05 22.27 0.22 -2.82 16 21 C -0.13 -3.38 10.05 22.27 0.22 -3.16 16 22 C -0.10 -2.66 8.40 22.27 0.19 -2.47 16 23 C 0.43 15.63 6.89 71.24 0.49 16.12 16 24 O -0.53 -23.67 15.27 21.97 0.34 -23.33 16 25 O -0.36 -10.65 10.37 -51.41 -0.53 -11.19 16 26 C 0.03 0.62 10.56 113.37 1.20 1.82 16 27 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.06 2.62 6.67 -2.39 -0.02 2.61 16 29 H 0.03 1.29 7.28 -2.39 -0.02 1.27 16 30 H 0.05 2.81 6.20 -2.38 -0.01 2.79 16 31 H 0.02 0.99 7.50 -2.39 -0.02 0.98 16 32 H 0.26 14.61 8.31 -92.70 -0.77 13.84 16 33 H 0.34 14.45 7.28 -89.68 -0.65 13.80 16 34 H 0.08 1.98 8.09 -2.38 -0.02 1.96 16 35 H 0.10 2.19 7.94 -2.39 -0.02 2.17 16 36 H 0.13 2.68 8.06 -2.91 -0.02 2.65 16 37 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 38 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 39 H 0.13 2.81 8.06 -2.91 -0.02 2.79 16 40 H 0.12 3.28 8.06 -2.91 -0.02 3.26 16 41 H 0.14 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 43 H 0.05 1.23 8.13 -2.39 -0.02 1.21 16 Total: -1.00 -66.50 354.17 4.68 -61.82 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.34 Total: 26.11 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: 4.48 Total: -18.87 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -1.97 Total: -81.54 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -0.20 Total: -34.52 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -66.50 4.68 -61.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255150046.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.012 kcal (2) G-P(sol) polarization free energy of solvation -66.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds