Wall clock time and date at job start Tue Mar 31 2020 06:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47004 * 2 1 4 4 H 1.08994 * 109.47223 * 185.34928 * 3 2 1 5 5 C 1.50699 * 109.47062 * 305.34646 * 3 2 1 6 6 H 1.08001 * 119.99731 * 119.99816 * 5 3 2 7 7 C 1.37878 * 120.00295 * 299.99687 * 5 3 2 8 8 N 1.31512 * 120.00329 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99763 * 0.02562 * 7 5 3 10 10 H 1.48504 * 109.47295 * 89.99701 * 9 7 5 11 11 H 1.48495 * 109.46886 * 209.99660 * 9 7 5 12 12 H 1.48497 * 109.47148 * 330.00020 * 9 7 5 13 13 N 1.46901 * 109.47079 * 65.34439 * 3 2 1 14 14 C 1.46904 * 110.99724 * 87.04609 * 13 3 2 15 15 H 1.08998 * 109.47038 * 322.44860 * 14 13 3 16 16 C 1.52995 * 109.46895 * 202.44685 * 14 13 3 17 17 C 1.50697 * 109.47438 * 65.00348 * 16 14 13 18 18 C 1.38232 * 119.99847 * 269.72668 * 17 16 14 19 19 C 1.38236 * 119.99790 * 179.76389 * 18 17 16 20 20 C 1.38235 * 120.00277 * 0.50538 * 19 18 17 21 21 C 1.38237 * 119.99486 * 359.75004 * 20 19 18 22 22 C 1.38233 * 120.00392 * 359.97438 * 21 20 19 23 23 C 1.50707 * 109.46749 * 82.44844 * 14 13 3 24 24 O 1.20826 * 119.99976 * 359.97438 * 23 14 13 25 25 O 1.34228 * 119.99567 * 179.97438 * 23 14 13 26 26 C 1.45199 * 116.99711 * 179.97438 * 25 23 14 27 27 H 1.08992 * 109.47650 * 295.00310 * 1 2 3 28 28 H 1.09000 * 109.47324 * 55.00537 * 1 2 3 29 29 H 1.09009 * 109.46845 * 175.00018 * 1 2 3 30 30 H 1.08997 * 109.47040 * 120.00049 * 2 1 3 31 31 H 1.09003 * 109.47472 * 240.00132 * 2 1 3 32 32 H 0.96997 * 120.00485 * 179.97438 * 8 7 5 33 33 H 1.00899 * 110.99789 * 323.09795 * 13 3 2 34 34 H 1.09001 * 109.47016 * 185.00263 * 16 14 13 35 35 H 1.09001 * 109.47459 * 305.00164 * 16 14 13 36 36 H 1.07998 * 120.00391 * 359.97438 * 18 17 16 37 37 H 1.08001 * 119.99827 * 180.23083 * 19 18 17 38 38 H 1.08002 * 120.00347 * 179.71875 * 20 19 18 39 39 H 1.08003 * 119.99618 * 179.97438 * 21 20 19 40 40 H 1.07993 * 120.00100 * 179.97438 * 22 21 20 41 41 H 1.08999 * 109.47088 * 60.00108 * 26 25 23 42 42 H 1.08994 * 109.47216 * 180.02562 * 26 25 23 43 43 H 1.09006 * 109.46887 * 300.00167 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1257 1.4441 -0.0958 5 6 1.4324 2.1901 -1.1589 6 1 0.8238 3.0638 -0.9784 7 6 1.6536 1.7587 -2.4497 8 7 1.1230 2.4108 -3.4610 9 14 2.7058 0.2471 -2.7618 10 1 1.8445 -0.9626 -2.7694 11 1 3.3849 0.3795 -4.0757 12 1 3.7243 0.1227 -1.6884 13 7 1.6584 2.0968 1.2587 14 6 2.6639 1.8567 2.3026 15 1 3.0470 0.8404 2.2112 16 6 2.0225 2.0382 3.6797 17 6 0.9712 0.9788 3.8878 18 6 -0.3364 1.2189 3.5092 19 6 -1.2998 0.2452 3.6956 20 6 -0.9578 -0.9646 4.2702 21 6 0.3488 -1.2027 4.6537 22 6 1.3134 -0.2312 4.4621 23 6 3.7973 2.8371 2.1431 24 8 3.7705 3.6518 1.2512 25 8 4.8366 2.8052 2.9920 26 6 5.8924 3.7787 2.7782 27 1 -0.3634 0.4343 0.9313 28 1 -0.3634 0.5894 -0.8419 29 1 -0.3633 -1.0239 -0.0896 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.2789 2.1075 -4.3691 33 1 0.7444 1.7945 1.5608 34 1 2.7871 1.9478 4.4513 35 1 1.5615 3.0241 3.7388 36 1 -0.6047 2.1658 3.0646 37 1 -2.3207 0.4314 3.3963 38 1 -1.7114 -1.7236 4.4200 39 1 0.6160 -2.1478 5.1030 40 1 2.3341 -0.4171 4.7620 41 1 5.4805 4.7848 2.8572 42 1 6.6691 3.6436 3.5308 43 1 6.3205 3.6383 1.7856 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255150049.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:01 Heat of formation + Delta-G solvation = -52.359880 kcal Electronic energy + Delta-G solvation = -24417.931783 eV Core-core repulsion = 21042.505328 eV Total energy + Delta-G solvation = -3375.426455 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.25096 -39.25107 -37.10091 -35.74292 -34.18142 -31.85859 -30.87369 -30.80589 -28.67684 -27.32185 -26.25496 -24.13594 -23.22182 -22.49724 -21.17018 -20.34757 -19.43317 -17.24454 -16.86513 -16.40886 -16.11876 -15.86487 -15.34315 -15.12095 -14.90189 -14.69965 -13.83847 -13.54978 -13.37519 -13.24496 -12.88461 -12.75990 -12.74133 -12.50342 -12.33396 -12.05001 -11.81665 -11.50768 -11.06824 -10.96062 -10.93042 -10.75834 -10.55015 -10.47650 -10.37315 -9.95308 -9.77502 -9.36374 -9.09370 -8.85267 -8.66596 -8.46895 -7.53847 -5.96941 -3.91086 1.35542 1.43801 2.73198 2.98719 3.29066 3.38689 3.41050 3.82090 4.46510 4.69905 4.79211 4.96933 5.03217 5.14555 5.16645 5.24648 5.31607 5.33548 5.34283 5.44973 5.53024 5.54125 5.68171 5.76554 5.92674 5.94892 6.01723 6.08972 6.11078 6.19456 6.48638 6.55043 6.56489 6.64603 6.71483 6.78425 6.81746 6.98896 7.03836 7.30179 7.71092 7.85387 8.23472 8.31955 8.75126 9.15461 9.65722 11.16741 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011227 B = 0.007423 C = 0.005077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.479205 B = 3770.948048 C = 5514.217539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.159 4.159 3 C 0.190 3.810 4 H 0.030 0.970 5 C -0.478 4.478 6 H 0.083 0.917 7 C 0.069 3.931 8 N -0.901 5.901 9 Si 0.877 3.123 10 H -0.279 1.279 11 H -0.297 1.297 12 H -0.272 1.272 13 N -0.653 5.653 14 C 0.104 3.896 15 H 0.073 0.927 16 C -0.079 4.079 17 C -0.083 4.083 18 C -0.112 4.112 19 C -0.114 4.114 20 C -0.124 4.124 21 C -0.121 4.121 22 C -0.115 4.115 23 C 0.452 3.548 24 O -0.460 6.460 25 O -0.372 6.372 26 C 0.037 3.963 27 H 0.042 0.958 28 H 0.081 0.919 29 H 0.030 0.970 30 H 0.032 0.968 31 H 0.050 0.950 32 H 0.262 0.738 33 H 0.347 0.653 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.129 0.871 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.060 0.940 42 H 0.094 0.906 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.556 -5.360 18.387 19.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.198 4.198 3 C 0.081 3.919 4 H 0.048 0.952 5 C -0.517 4.517 6 H 0.101 0.899 7 C -0.131 4.131 8 N -0.540 5.540 9 Si 0.708 3.292 10 H -0.206 1.206 11 H -0.224 1.224 12 H -0.198 1.198 13 N -0.289 5.289 14 C -0.008 4.008 15 H 0.090 0.910 16 C -0.117 4.117 17 C -0.083 4.083 18 C -0.130 4.130 19 C -0.132 4.132 20 C -0.142 4.142 21 C -0.139 4.139 22 C -0.133 4.133 23 C 0.290 3.710 24 O -0.341 6.341 25 O -0.290 6.290 26 C -0.058 4.058 27 H 0.061 0.939 28 H 0.100 0.900 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.172 0.828 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.147 0.853 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.079 0.921 42 H 0.113 0.887 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.798 -4.446 17.713 18.351 hybrid contribution 0.635 -1.772 -0.317 1.909 sum 2.433 -6.218 17.396 18.634 Atomic orbital electron populations 1.21657 0.95583 0.99648 1.02569 1.22504 0.97521 1.00836 0.98917 1.19721 0.95910 0.88134 0.88149 0.95246 1.20789 1.30659 1.12398 0.87846 0.89909 1.24851 0.95543 0.96567 0.96189 1.69870 1.45180 1.40233 0.98750 0.87024 0.81247 0.84077 0.76848 1.20604 1.22419 1.19793 1.60318 1.03176 1.63278 1.02129 1.20934 0.91278 0.95144 0.93494 0.90983 1.20720 0.97110 0.98498 0.95332 1.19798 0.94469 0.95267 0.98756 1.21204 0.92590 0.99994 0.99224 1.21158 0.99549 0.93681 0.98780 1.21129 0.96416 0.97260 0.99370 1.21091 0.93373 0.98961 1.00437 1.21043 0.99415 0.93228 0.99588 1.23933 0.82531 0.84879 0.79634 1.90739 1.76995 1.35606 1.30810 1.86472 1.30872 1.56282 1.55367 1.23146 0.88454 0.91659 1.02495 0.93897 0.90011 0.95105 0.94957 0.93212 0.92830 0.82820 0.89357 0.89462 0.85300 0.85952 0.86386 0.86350 0.86098 0.92147 0.88709 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.41 37.16 0.35 -2.43 16 2 C -0.16 -3.46 5.20 -26.73 -0.14 -3.60 16 3 C 0.19 4.56 1.48 -68.86 -0.10 4.46 16 4 H 0.03 0.77 6.47 -51.93 -0.34 0.44 16 5 C -0.48 -13.64 7.83 -34.44 -0.27 -13.91 16 6 H 0.08 2.61 8.06 -52.49 -0.42 2.19 16 7 C 0.07 2.03 5.42 -17.82 -0.10 1.93 16 8 N -0.90 -27.99 13.96 55.43 0.77 -27.21 16 9 Si 0.88 22.52 24.32 -169.99 -4.13 18.39 16 10 H -0.28 -6.91 6.92 56.52 0.39 -6.52 16 11 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 12 H -0.27 -6.81 6.53 56.52 0.37 -6.45 16 13 N -0.65 -13.45 5.60 -102.17 -0.57 -14.03 16 14 C 0.10 1.79 2.37 -68.86 -0.16 1.62 16 15 H 0.07 1.22 7.25 -51.93 -0.38 0.85 16 16 C -0.08 -1.05 4.95 -27.89 -0.14 -1.18 16 17 C -0.08 -1.06 4.82 -104.63 -0.50 -1.57 16 18 C -0.11 -1.44 7.20 -39.58 -0.29 -1.73 16 19 C -0.11 -1.33 10.05 -39.58 -0.40 -1.73 16 20 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 21 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 22 C -0.11 -1.34 9.70 -39.58 -0.38 -1.72 16 23 C 0.45 8.40 6.93 36.01 0.25 8.64 16 24 O -0.46 -10.50 15.80 -18.75 -0.30 -10.80 16 25 O -0.37 -5.67 10.37 -39.25 -0.41 -6.07 16 26 C 0.04 0.45 10.56 101.05 1.07 1.51 16 27 H 0.04 0.77 5.78 -51.93 -0.30 0.47 16 28 H 0.08 1.89 6.85 -51.93 -0.36 1.53 16 29 H 0.03 0.55 8.14 -51.92 -0.42 0.13 16 30 H 0.03 0.63 7.50 -51.93 -0.39 0.24 16 31 H 0.05 1.16 3.43 -51.93 -0.18 0.98 16 32 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 33 H 0.35 6.54 3.54 -39.29 -0.14 6.40 16 34 H 0.09 1.00 7.94 -51.93 -0.41 0.58 16 35 H 0.09 1.15 8.08 -51.93 -0.42 0.73 16 36 H 0.13 1.65 7.61 -52.49 -0.40 1.25 16 37 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 39 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 40 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 41 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 42 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 LS Contribution 342.21 15.07 5.16 5.16 Total: -1.00 -33.58 342.21 -7.38 -40.96 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -6.29 Total: 6.75 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -1.61 Total: -13.15 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.20 Total: -41.24 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.70 Total: -16.87 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.13 Total: 18.39 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.58 -7.38 -40.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255150049.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.400 kcal (2) G-P(sol) polarization free energy of solvation -33.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds