Wall clock time and date at job start Tue Mar 31 2020 06:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47004 * 2 1 4 4 H 1.08994 * 109.47223 * 185.34928 * 3 2 1 5 5 C 1.50699 * 109.47062 * 305.34646 * 3 2 1 6 6 H 1.08001 * 119.99731 * 119.99816 * 5 3 2 7 7 C 1.37878 * 120.00295 * 299.99687 * 5 3 2 8 8 N 1.31512 * 120.00329 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99763 * 0.02562 * 7 5 3 10 10 H 1.48504 * 109.47295 * 89.99701 * 9 7 5 11 11 H 1.48495 * 109.46886 * 209.99660 * 9 7 5 12 12 H 1.48497 * 109.47148 * 330.00020 * 9 7 5 13 13 N 1.46901 * 109.47079 * 65.34439 * 3 2 1 14 14 C 1.46904 * 110.99724 * 87.04609 * 13 3 2 15 15 H 1.08998 * 109.47038 * 322.44860 * 14 13 3 16 16 C 1.52995 * 109.46895 * 202.44685 * 14 13 3 17 17 C 1.50697 * 109.47438 * 65.00348 * 16 14 13 18 18 C 1.38232 * 119.99847 * 269.72668 * 17 16 14 19 19 C 1.38236 * 119.99790 * 179.76389 * 18 17 16 20 20 C 1.38235 * 120.00277 * 0.50538 * 19 18 17 21 21 C 1.38237 * 119.99486 * 359.75004 * 20 19 18 22 22 C 1.38233 * 120.00392 * 359.97438 * 21 20 19 23 23 C 1.50707 * 109.46749 * 82.44844 * 14 13 3 24 24 O 1.20826 * 119.99976 * 359.97438 * 23 14 13 25 25 O 1.34228 * 119.99567 * 179.97438 * 23 14 13 26 26 C 1.45199 * 116.99711 * 179.97438 * 25 23 14 27 27 H 1.08992 * 109.47650 * 295.00310 * 1 2 3 28 28 H 1.09000 * 109.47324 * 55.00537 * 1 2 3 29 29 H 1.09009 * 109.46845 * 175.00018 * 1 2 3 30 30 H 1.08997 * 109.47040 * 120.00049 * 2 1 3 31 31 H 1.09003 * 109.47472 * 240.00132 * 2 1 3 32 32 H 0.96997 * 120.00485 * 179.97438 * 8 7 5 33 33 H 1.00899 * 110.99789 * 323.09795 * 13 3 2 34 34 H 1.09001 * 109.47016 * 185.00263 * 16 14 13 35 35 H 1.09001 * 109.47459 * 305.00164 * 16 14 13 36 36 H 1.07998 * 120.00391 * 359.97438 * 18 17 16 37 37 H 1.08001 * 119.99827 * 180.23083 * 19 18 17 38 38 H 1.08002 * 120.00347 * 179.71875 * 20 19 18 39 39 H 1.08003 * 119.99618 * 179.97438 * 21 20 19 40 40 H 1.07993 * 120.00100 * 179.97438 * 22 21 20 41 41 H 1.08999 * 109.47088 * 60.00108 * 26 25 23 42 42 H 1.08994 * 109.47216 * 180.02562 * 26 25 23 43 43 H 1.09006 * 109.46887 * 300.00167 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1257 1.4441 -0.0958 5 6 1.4324 2.1901 -1.1589 6 1 0.8238 3.0638 -0.9784 7 6 1.6536 1.7587 -2.4497 8 7 1.1230 2.4108 -3.4610 9 14 2.7058 0.2471 -2.7618 10 1 1.8445 -0.9626 -2.7694 11 1 3.3849 0.3795 -4.0757 12 1 3.7243 0.1227 -1.6884 13 7 1.6584 2.0968 1.2587 14 6 2.6639 1.8567 2.3026 15 1 3.0470 0.8404 2.2112 16 6 2.0225 2.0382 3.6797 17 6 0.9712 0.9788 3.8878 18 6 -0.3364 1.2189 3.5092 19 6 -1.2998 0.2452 3.6956 20 6 -0.9578 -0.9646 4.2702 21 6 0.3488 -1.2027 4.6537 22 6 1.3134 -0.2312 4.4621 23 6 3.7973 2.8371 2.1431 24 8 3.7705 3.6518 1.2512 25 8 4.8366 2.8052 2.9920 26 6 5.8924 3.7787 2.7782 27 1 -0.3634 0.4343 0.9313 28 1 -0.3634 0.5894 -0.8419 29 1 -0.3633 -1.0239 -0.0896 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.2789 2.1075 -4.3691 33 1 0.7444 1.7945 1.5608 34 1 2.7871 1.9478 4.4513 35 1 1.5615 3.0241 3.7388 36 1 -0.6047 2.1658 3.0646 37 1 -2.3207 0.4314 3.3963 38 1 -1.7114 -1.7236 4.4200 39 1 0.6160 -2.1478 5.1030 40 1 2.3341 -0.4171 4.7620 41 1 5.4805 4.7848 2.8572 42 1 6.6691 3.6436 3.5308 43 1 6.3205 3.6383 1.7856 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255150049.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:00 Heat of formation + Delta-G solvation = -74.146218 kcal Electronic energy + Delta-G solvation = -24418.876510 eV Core-core repulsion = 21042.505328 eV Total energy + Delta-G solvation = -3376.371182 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.62167 -40.25013 -38.61123 -37.23850 -35.62906 -33.89166 -32.12491 -31.72597 -30.05016 -28.66368 -27.88434 -25.34018 -25.10385 -23.38419 -22.27101 -21.79584 -21.07467 -18.64274 -18.52837 -17.81125 -17.35817 -17.24153 -16.98119 -16.49698 -16.09612 -15.84870 -15.39832 -14.98109 -14.70289 -14.62664 -14.33054 -14.25564 -14.06614 -13.78817 -13.70589 -13.29335 -12.97090 -12.85368 -12.65358 -12.51466 -12.34542 -12.26223 -12.00116 -11.79251 -11.73817 -11.68849 -11.44813 -11.21448 -11.11547 -10.69263 -9.73369 -9.57332 -9.16896 -8.24240 -6.22309 0.46560 0.57879 1.24121 1.29410 1.30299 1.38405 1.72911 2.31260 2.93651 3.09784 3.34534 3.70831 3.95230 4.00993 4.11614 4.17195 4.24756 4.25390 4.27511 4.33830 4.36024 4.39276 4.44848 4.53807 4.69897 4.71412 4.80993 4.86961 4.94210 5.02014 5.12834 5.19972 5.24519 5.25436 5.39558 5.57219 5.64995 5.71103 5.71642 5.75409 5.92943 6.19638 6.58693 6.68073 6.80668 6.92495 7.38549 8.93565 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011227 B = 0.007423 C = 0.005077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.479205 B = 3770.948048 C = 5514.217539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.154 4.154 3 C 0.199 3.801 4 H 0.009 0.991 5 C -0.476 4.476 6 H 0.034 0.966 7 C 0.013 3.987 8 N -0.950 5.950 9 Si 0.938 3.062 10 H -0.259 1.259 11 H -0.300 1.300 12 H -0.260 1.260 13 N -0.669 5.669 14 C 0.103 3.897 15 H 0.084 0.916 16 C -0.067 4.067 17 C -0.096 4.096 18 C -0.131 4.131 19 C -0.124 4.124 20 C -0.125 4.125 21 C -0.122 4.122 22 C -0.118 4.118 23 C 0.454 3.546 24 O -0.515 6.515 25 O -0.361 6.361 26 C 0.028 3.972 27 H 0.059 0.941 28 H 0.043 0.957 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.263 0.737 33 H 0.356 0.644 34 H 0.114 0.886 35 H 0.080 0.920 36 H 0.117 0.883 37 H 0.133 0.867 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.140 0.860 41 H 0.058 0.942 42 H 0.141 0.859 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.495 -8.333 21.118 22.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.193 4.193 3 C 0.089 3.911 4 H 0.027 0.973 5 C -0.515 4.515 6 H 0.052 0.948 7 C -0.183 4.183 8 N -0.592 5.592 9 Si 0.765 3.235 10 H -0.184 1.184 11 H -0.228 1.228 12 H -0.185 1.185 13 N -0.306 5.306 14 C -0.009 4.009 15 H 0.101 0.899 16 C -0.105 4.105 17 C -0.097 4.097 18 C -0.149 4.149 19 C -0.142 4.142 20 C -0.143 4.143 21 C -0.140 4.140 22 C -0.136 4.136 23 C 0.296 3.704 24 O -0.401 6.401 25 O -0.277 6.277 26 C -0.065 4.065 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.182 0.818 34 H 0.132 0.868 35 H 0.099 0.901 36 H 0.135 0.865 37 H 0.151 0.849 38 H 0.158 0.842 39 H 0.162 0.838 40 H 0.158 0.842 41 H 0.077 0.923 42 H 0.159 0.841 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.739 -7.437 20.503 21.981 hybrid contribution 0.338 -0.742 -1.044 1.325 sum 3.077 -8.179 19.459 21.331 Atomic orbital electron populations 1.21561 0.94604 1.00717 1.01904 1.22396 0.98363 0.98770 0.99804 1.19392 0.94084 0.89416 0.88181 0.97278 1.20983 1.29514 1.11081 0.89940 0.94802 1.25632 0.96969 0.99825 0.95886 1.70030 1.47354 1.42494 0.99273 0.86029 0.79923 0.80866 0.76634 1.18415 1.22759 1.18513 1.60053 1.04691 1.63649 1.02238 1.21070 0.90351 0.95114 0.94367 0.89850 1.20655 0.97810 0.98649 0.93357 1.19780 0.94069 0.95813 0.99991 1.21254 0.93370 1.00113 1.00161 1.21369 0.99906 0.93935 0.98993 1.21462 0.97250 0.97232 0.98352 1.21446 0.93077 0.99749 0.99734 1.21305 1.00667 0.92667 0.98986 1.24283 0.83202 0.84068 0.78870 1.90726 1.78244 1.37981 1.33180 1.86458 1.30540 1.56769 1.53941 1.23503 0.88365 0.91023 1.03600 0.92175 0.93747 0.92462 0.91748 0.94340 0.92812 0.81801 0.86799 0.90104 0.86502 0.84933 0.84159 0.83822 0.84231 0.92303 0.84138 0.93245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.08 9.41 71.98 0.68 -4.41 16 2 C -0.15 -6.41 5.20 30.59 0.16 -6.25 16 3 C 0.20 9.60 1.48 44.17 0.07 9.67 16 4 H 0.01 0.49 6.47 -2.39 -0.02 0.47 16 5 C -0.48 -28.29 7.83 25.60 0.20 -28.09 16 6 H 0.03 2.28 8.06 -2.91 -0.02 2.26 16 7 C 0.01 0.79 5.42 84.66 0.46 1.25 16 8 N -0.95 -61.44 13.96 21.45 0.30 -61.14 16 9 Si 0.94 46.75 24.32 68.60 1.67 48.42 16 10 H -0.26 -11.96 6.92 99.48 0.69 -11.27 16 11 H -0.30 -14.98 7.11 99.48 0.71 -14.28 16 12 H -0.26 -12.36 6.53 99.48 0.65 -11.71 16 13 N -0.67 -27.72 5.60 -477.15 -2.67 -30.40 16 14 C 0.10 3.41 2.37 44.17 0.10 3.51 16 15 H 0.08 2.61 7.25 -2.39 -0.02 2.59 16 16 C -0.07 -1.66 4.95 29.85 0.15 -1.51 16 17 C -0.10 -2.25 4.82 -19.87 -0.10 -2.35 16 18 C -0.13 -3.20 7.20 22.27 0.16 -3.04 16 19 C -0.12 -2.64 10.05 22.27 0.22 -2.42 16 20 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 21 C -0.12 -2.15 10.05 22.27 0.22 -1.93 16 22 C -0.12 -2.32 9.70 22.27 0.22 -2.11 16 23 C 0.45 16.69 6.93 71.24 0.49 17.19 16 24 O -0.52 -24.18 15.80 21.96 0.35 -23.83 16 25 O -0.36 -10.30 10.37 -51.40 -0.53 -10.84 16 26 C 0.03 0.64 10.56 113.37 1.20 1.84 16 27 H 0.06 2.09 5.78 -2.39 -0.01 2.08 16 28 H 0.04 2.06 6.85 -2.39 -0.02 2.04 16 29 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.06 2.27 7.50 -2.39 -0.02 2.25 16 31 H 0.04 1.69 3.43 -2.39 -0.01 1.68 16 32 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 33 H 0.36 13.39 3.54 -89.69 -0.32 13.07 16 34 H 0.11 2.21 7.94 -2.39 -0.02 2.19 16 35 H 0.08 2.08 8.08 -2.39 -0.02 2.07 16 36 H 0.12 3.04 7.61 -2.91 -0.02 3.02 16 37 H 0.13 2.43 8.06 -2.91 -0.02 2.40 16 38 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 39 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 40 H 0.14 2.16 8.06 -2.91 -0.02 2.13 16 41 H 0.06 1.37 8.13 -2.39 -0.02 1.35 16 42 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.05 1.24 8.13 -2.38 -0.02 1.22 16 Total: -1.00 -76.53 342.21 4.18 -72.35 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: 0.61 Total: 26.16 kcal Atomic # 6 Polarization: -25.17 SS G_CDS: 4.46 Total: -20.72 kcal Atomic # 7 Polarization: -89.17 SS G_CDS: -2.37 Total: -91.54 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -0.19 Total: -34.67 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 1.67 Total: 48.42 kcal Total: -76.53 4.18 -72.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255150049.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.797 kcal (2) G-P(sol) polarization free energy of solvation -76.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds