Wall clock time and date at job start Tue Mar 31 2020 06:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46962 * 2 1 4 4 H 1.09007 * 109.46627 * 305.68558 * 3 2 1 5 5 C 1.50696 * 109.46878 * 185.68999 * 3 2 1 6 6 H 1.08004 * 119.99685 * 242.29119 * 5 3 2 7 7 C 1.37877 * 120.00504 * 62.29625 * 5 3 2 8 8 N 1.31508 * 119.99988 * 195.94754 * 7 5 3 9 9 Si 1.86803 * 119.99763 * 15.94709 * 7 5 3 10 10 H 1.48499 * 109.47185 * 91.95587 * 9 7 5 11 11 H 1.48493 * 109.47027 * 211.95929 * 9 7 5 12 12 H 1.48504 * 109.47163 * 331.95436 * 9 7 5 13 13 N 1.46898 * 109.47267 * 65.68461 * 3 2 1 14 14 C 1.46897 * 110.99973 * 200.62199 * 13 3 2 15 15 H 1.09003 * 109.47354 * 325.29412 * 14 13 3 16 16 C 1.53001 * 109.47220 * 205.28819 * 14 13 3 17 17 C 1.50696 * 109.47159 * 65.00169 * 16 14 13 18 18 C 1.38242 * 120.00110 * 89.99569 * 17 16 14 19 19 C 1.38233 * 119.99960 * 180.02562 * 18 17 16 20 20 C 1.38236 * 119.99840 * 359.96393 * 19 18 17 21 21 C 1.38227 * 120.00425 * 0.27212 * 20 19 18 22 22 C 1.38234 * 119.99648 * 359.53419 * 21 20 19 23 23 C 1.50700 * 109.46992 * 85.29265 * 14 13 3 24 24 O 1.20824 * 120.00154 * 23.49162 * 23 14 13 25 25 O 1.34229 * 119.99901 * 203.50012 * 23 14 13 26 26 C 1.45202 * 117.00348 * 179.97438 * 25 23 14 27 27 H 1.09002 * 109.46582 * 183.11203 * 1 2 3 28 28 H 1.09001 * 109.47492 * 303.10850 * 1 2 3 29 29 H 1.08997 * 109.47444 * 63.11294 * 1 2 3 30 30 H 1.08997 * 109.47332 * 239.99892 * 2 1 3 31 31 H 1.09001 * 109.46689 * 119.99339 * 2 1 3 32 32 H 0.97005 * 119.99922 * 180.02562 * 8 7 5 33 33 H 1.00899 * 110.99895 * 76.66759 * 13 3 2 34 34 H 1.09001 * 109.47203 * 305.00138 * 16 14 13 35 35 H 1.09000 * 109.46891 * 185.00136 * 16 14 13 36 36 H 1.08004 * 119.99684 * 0.02562 * 18 17 16 37 37 H 1.07999 * 119.99877 * 179.97438 * 19 18 17 38 38 H 1.08003 * 119.99649 * 179.97438 * 20 19 18 39 39 H 1.07998 * 120.00354 * 179.72908 * 21 20 19 40 40 H 1.08005 * 119.99708 * 180.20570 * 22 21 20 41 41 H 1.08998 * 109.47512 * 179.97438 * 26 25 23 42 42 H 1.09003 * 109.47238 * 300.00140 * 26 25 23 43 43 H 1.08998 * 109.47097 * 59.99672 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5958 1.9849 -0.8348 5 6 3.5403 1.4449 -0.1409 6 1 4.1560 1.8530 0.6471 7 6 4.1271 0.9261 -1.2756 8 7 5.4100 0.6368 -1.2789 9 14 3.0998 0.6341 -2.8082 10 1 3.1571 1.8356 -3.6789 11 1 3.6343 -0.5382 -3.5464 12 1 1.6911 0.3726 -2.4174 13 7 1.6655 2.0943 1.2621 14 6 1.6858 3.5568 1.1256 15 1 2.4879 3.8473 0.4471 16 6 1.9216 4.1938 2.4966 17 6 3.2942 3.8209 2.9943 18 6 4.3801 4.6215 2.6926 19 6 5.6392 4.2791 3.1488 20 6 5.8125 3.1365 3.9074 21 6 4.7276 2.3333 4.2050 22 6 3.4678 2.6778 3.7521 23 6 0.3653 4.0281 0.5732 24 8 -0.6240 3.3480 0.7099 25 8 0.2881 5.2033 -0.0707 26 6 -1.0157 5.5935 -0.5767 27 1 -0.3632 -1.0262 0.0558 28 1 -0.3634 0.5613 0.8608 29 1 -0.3634 0.4647 -0.9165 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 5.8229 0.2722 -2.0773 33 1 2.2645 1.7932 2.0161 34 1 1.1701 3.8332 3.1989 35 1 1.8484 5.2779 2.4109 36 1 4.2446 5.5145 2.1005 37 1 6.4876 4.9043 2.9128 38 1 6.7963 2.8687 4.2634 39 1 4.8636 1.4383 4.7939 40 1 2.6195 2.0520 3.9875 41 1 -0.9382 6.5604 -1.0738 42 1 -1.3681 4.8462 -1.2878 43 1 -1.7200 5.6668 0.2520 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255150052.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:04 Heat of formation + Delta-G solvation = -62.459812 kcal Electronic energy + Delta-G solvation = -24388.798674 eV Core-core repulsion = 21012.934253 eV Total energy + Delta-G solvation = -3375.864421 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.17535 -38.99625 -36.81510 -35.70010 -33.94620 -31.96788 -30.86739 -30.55061 -28.72274 -27.38032 -26.22962 -24.01445 -22.48086 -22.20573 -21.01631 -19.93705 -19.66896 -17.40987 -16.82205 -16.55535 -16.14511 -15.86052 -15.18737 -14.87835 -14.62922 -14.30742 -13.85746 -13.47648 -13.09368 -13.04737 -12.86310 -12.68215 -12.51566 -12.30079 -12.05704 -11.84607 -11.56289 -11.41906 -11.14567 -10.87248 -10.82595 -10.74840 -10.62015 -10.48192 -10.27532 -9.85418 -9.73797 -9.51265 -9.18379 -8.55628 -8.47606 -8.35378 -7.45984 -6.14557 -4.10405 1.66327 1.76051 2.70122 3.05055 3.26706 3.36653 3.42452 4.13178 4.40325 4.88473 4.98910 5.16433 5.21984 5.24460 5.29787 5.31885 5.37150 5.41939 5.43816 5.67044 5.68021 5.79537 5.84049 5.98079 6.16286 6.22120 6.27266 6.34706 6.38147 6.43856 6.71065 6.73937 6.78871 6.84992 6.87954 6.92029 7.10961 7.19966 7.34305 7.38248 7.56374 7.88290 8.26864 8.33680 8.44959 8.93174 9.52785 10.97885 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.009919 B = 0.008237 C = 0.005610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.153404 B = 3398.587402 C = 4989.954903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 C 0.189 3.811 4 H 0.023 0.977 5 C -0.552 4.552 6 H 0.076 0.924 7 C 0.084 3.916 8 N -0.886 5.886 9 Si 0.855 3.145 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.248 1.248 13 N -0.661 5.661 14 C 0.107 3.893 15 H 0.090 0.910 16 C -0.074 4.074 17 C -0.079 4.079 18 C -0.108 4.108 19 C -0.116 4.116 20 C -0.120 4.120 21 C -0.113 4.113 22 C -0.111 4.111 23 C 0.463 3.537 24 O -0.486 6.486 25 O -0.367 6.367 26 C 0.036 3.964 27 H 0.029 0.971 28 H 0.067 0.933 29 H 0.034 0.966 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.262 0.738 33 H 0.350 0.650 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.124 0.876 41 H 0.095 0.905 42 H 0.059 0.941 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.427 8.714 7.622 12.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.147 4.147 3 C 0.080 3.920 4 H 0.040 0.960 5 C -0.591 4.591 6 H 0.094 0.906 7 C -0.120 4.120 8 N -0.522 5.522 9 Si 0.682 3.318 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.172 1.172 13 N -0.297 5.297 14 C -0.005 4.005 15 H 0.107 0.893 16 C -0.112 4.112 17 C -0.079 4.079 18 C -0.126 4.126 19 C -0.134 4.134 20 C -0.138 4.138 21 C -0.131 4.131 22 C -0.129 4.129 23 C 0.304 3.696 24 O -0.370 6.370 25 O -0.284 6.284 26 C -0.058 4.058 27 H 0.048 0.952 28 H 0.086 0.914 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.173 0.827 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.142 0.858 41 H 0.114 0.886 42 H 0.078 0.922 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.286 8.374 7.435 12.842 hybrid contribution 0.485 -0.144 -1.314 1.408 sum -5.800 8.230 6.121 11.783 Atomic orbital electron populations 1.21737 0.97590 0.99008 1.01638 1.21803 0.93660 0.98538 1.00658 1.19541 0.94315 0.91096 0.87001 0.95959 1.21655 0.90296 1.41810 1.05296 0.90583 1.24885 0.94610 0.93930 0.98613 1.70002 1.11489 1.42058 1.28690 0.87350 0.82672 0.77906 0.83899 1.20822 1.21322 1.17157 1.60453 1.58684 1.01115 1.09412 1.20869 0.90838 0.92279 0.96513 0.89275 1.20645 0.94584 1.00858 0.95134 1.19624 0.94649 0.95606 0.98036 1.20977 0.92452 0.99829 0.99362 1.21050 0.96929 0.97381 0.98053 1.21079 0.98550 0.95179 0.99010 1.21061 0.92806 0.99118 1.00132 1.21034 0.97579 0.96186 0.98065 1.24149 0.92252 0.78193 0.75024 1.90590 1.38032 1.54389 1.54018 1.86535 1.35308 1.38885 1.67625 1.23144 0.82960 1.00640 0.99030 0.95200 0.91419 0.94686 0.92921 0.92924 0.92773 0.82735 0.89874 0.90030 0.86276 0.86461 0.86558 0.86308 0.85847 0.88648 0.92240 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.84 37.16 0.37 -2.52 16 2 C -0.11 -2.44 4.83 -26.73 -0.13 -2.57 16 3 C 0.19 4.44 1.35 -68.87 -0.09 4.35 16 4 H 0.02 0.56 6.50 -51.93 -0.34 0.23 16 5 C -0.55 -14.82 8.51 -34.44 -0.29 -15.11 16 6 H 0.08 2.21 8.03 -52.48 -0.42 1.79 16 7 C 0.08 2.34 5.31 -17.82 -0.09 2.25 16 8 N -0.89 -26.36 13.96 55.43 0.77 -25.59 16 9 Si 0.85 21.21 25.75 -169.99 -4.38 16.83 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 12 H -0.25 -5.91 5.42 56.52 0.31 -5.61 16 13 N -0.66 -13.40 5.08 -102.17 -0.52 -13.92 16 14 C 0.11 1.96 2.35 -68.87 -0.16 1.80 16 15 H 0.09 1.81 7.46 -51.93 -0.39 1.42 16 16 C -0.07 -1.10 4.96 -27.88 -0.14 -1.23 16 17 C -0.08 -1.22 4.84 -104.62 -0.51 -1.72 16 18 C -0.11 -1.63 9.70 -39.58 -0.38 -2.02 16 19 C -0.12 -1.71 10.05 -39.58 -0.40 -2.10 16 20 C -0.12 -1.75 10.05 -39.59 -0.40 -2.15 16 21 C -0.11 -1.67 10.05 -39.59 -0.40 -2.07 16 22 C -0.11 -1.68 8.04 -39.58 -0.32 -2.00 16 23 C 0.46 8.50 6.84 36.01 0.25 8.75 16 24 O -0.49 -9.85 16.35 -18.75 -0.31 -10.16 16 25 O -0.37 -5.92 10.57 -39.25 -0.41 -6.34 16 26 C 0.04 0.45 10.56 101.05 1.07 1.52 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 1.39 7.69 -51.93 -0.40 0.99 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 1.24 4.69 -51.93 -0.24 1.00 16 31 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.35 6.92 5.28 -39.29 -0.21 6.71 16 34 H 0.08 1.16 8.09 -51.93 -0.42 0.74 16 35 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 36 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 37 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 39 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 40 H 0.12 1.73 7.52 -52.48 -0.39 1.34 16 41 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 43 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 LS Contribution 351.33 15.07 5.29 5.29 Total: -1.00 -31.40 351.33 -7.87 -39.27 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -6.69 Total: 9.45 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -1.63 Total: -14.84 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.25 Total: -39.51 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.72 Total: -16.50 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.38 Total: 16.83 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.40 -7.87 -39.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255150052.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.186 kcal (2) G-P(sol) polarization free energy of solvation -31.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds