Wall clock time and date at job start Tue Mar 31 2020 06:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46962 * 2 1 4 4 H 1.09007 * 109.46627 * 305.68558 * 3 2 1 5 5 C 1.50696 * 109.46878 * 185.68999 * 3 2 1 6 6 H 1.08004 * 119.99685 * 242.29119 * 5 3 2 7 7 C 1.37877 * 120.00504 * 62.29625 * 5 3 2 8 8 N 1.31508 * 119.99988 * 195.94754 * 7 5 3 9 9 Si 1.86803 * 119.99763 * 15.94709 * 7 5 3 10 10 H 1.48499 * 109.47185 * 91.95587 * 9 7 5 11 11 H 1.48493 * 109.47027 * 211.95929 * 9 7 5 12 12 H 1.48504 * 109.47163 * 331.95436 * 9 7 5 13 13 N 1.46898 * 109.47267 * 65.68461 * 3 2 1 14 14 C 1.46897 * 110.99973 * 200.62199 * 13 3 2 15 15 H 1.09003 * 109.47354 * 325.29412 * 14 13 3 16 16 C 1.53001 * 109.47220 * 205.28819 * 14 13 3 17 17 C 1.50696 * 109.47159 * 65.00169 * 16 14 13 18 18 C 1.38242 * 120.00110 * 89.99569 * 17 16 14 19 19 C 1.38233 * 119.99960 * 180.02562 * 18 17 16 20 20 C 1.38236 * 119.99840 * 359.96393 * 19 18 17 21 21 C 1.38227 * 120.00425 * 0.27212 * 20 19 18 22 22 C 1.38234 * 119.99648 * 359.53419 * 21 20 19 23 23 C 1.50700 * 109.46992 * 85.29265 * 14 13 3 24 24 O 1.20824 * 120.00154 * 23.49162 * 23 14 13 25 25 O 1.34229 * 119.99901 * 203.50012 * 23 14 13 26 26 C 1.45202 * 117.00348 * 179.97438 * 25 23 14 27 27 H 1.09002 * 109.46582 * 183.11203 * 1 2 3 28 28 H 1.09001 * 109.47492 * 303.10850 * 1 2 3 29 29 H 1.08997 * 109.47444 * 63.11294 * 1 2 3 30 30 H 1.08997 * 109.47332 * 239.99892 * 2 1 3 31 31 H 1.09001 * 109.46689 * 119.99339 * 2 1 3 32 32 H 0.97005 * 119.99922 * 180.02562 * 8 7 5 33 33 H 1.00899 * 110.99895 * 76.66759 * 13 3 2 34 34 H 1.09001 * 109.47203 * 305.00138 * 16 14 13 35 35 H 1.09000 * 109.46891 * 185.00136 * 16 14 13 36 36 H 1.08004 * 119.99684 * 0.02562 * 18 17 16 37 37 H 1.07999 * 119.99877 * 179.97438 * 19 18 17 38 38 H 1.08003 * 119.99649 * 179.97438 * 20 19 18 39 39 H 1.07998 * 120.00354 * 179.72908 * 21 20 19 40 40 H 1.08005 * 119.99708 * 180.20570 * 22 21 20 41 41 H 1.08998 * 109.47512 * 179.97438 * 26 25 23 42 42 H 1.09003 * 109.47238 * 300.00140 * 26 25 23 43 43 H 1.08998 * 109.47097 * 59.99672 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5958 1.9849 -0.8348 5 6 3.5403 1.4449 -0.1409 6 1 4.1560 1.8530 0.6471 7 6 4.1271 0.9261 -1.2756 8 7 5.4100 0.6368 -1.2789 9 14 3.0998 0.6341 -2.8082 10 1 3.1571 1.8356 -3.6789 11 1 3.6343 -0.5382 -3.5464 12 1 1.6911 0.3726 -2.4174 13 7 1.6655 2.0943 1.2621 14 6 1.6858 3.5568 1.1256 15 1 2.4879 3.8473 0.4471 16 6 1.9216 4.1938 2.4966 17 6 3.2942 3.8209 2.9943 18 6 4.3801 4.6215 2.6926 19 6 5.6392 4.2791 3.1488 20 6 5.8125 3.1365 3.9074 21 6 4.7276 2.3333 4.2050 22 6 3.4678 2.6778 3.7521 23 6 0.3653 4.0281 0.5732 24 8 -0.6240 3.3480 0.7099 25 8 0.2881 5.2033 -0.0707 26 6 -1.0157 5.5935 -0.5767 27 1 -0.3632 -1.0262 0.0558 28 1 -0.3634 0.5613 0.8608 29 1 -0.3634 0.4647 -0.9165 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 5.8229 0.2722 -2.0773 33 1 2.2645 1.7932 2.0161 34 1 1.1701 3.8332 3.1989 35 1 1.8484 5.2779 2.4109 36 1 4.2446 5.5145 2.1005 37 1 6.4876 4.9043 2.9128 38 1 6.7963 2.8687 4.2634 39 1 4.8636 1.4383 4.7939 40 1 2.6195 2.0520 3.9875 41 1 -0.9382 6.5604 -1.0738 42 1 -1.3681 4.8462 -1.2878 43 1 -1.7200 5.6668 0.2520 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255150052.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:03 Heat of formation + Delta-G solvation = -80.629346 kcal Electronic energy + Delta-G solvation = -24389.586564 eV Core-core repulsion = 21012.934253 eV Total energy + Delta-G solvation = -3376.652311 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.55586 -40.18515 -38.35917 -37.17318 -35.48630 -34.00860 -32.28100 -31.70212 -30.17039 -28.67099 -27.89068 -25.33862 -24.28784 -23.40975 -22.26646 -21.52631 -21.23425 -19.16129 -18.52337 -17.80731 -17.47276 -17.20274 -16.77383 -16.25748 -16.00370 -15.74694 -15.49776 -14.94843 -14.68404 -14.39784 -14.22839 -14.20087 -13.81777 -13.70297 -13.54870 -13.32256 -13.05384 -12.93148 -12.62850 -12.61556 -12.49399 -12.09707 -11.98104 -11.78439 -11.71048 -11.61517 -11.48548 -11.24124 -11.08120 -10.61181 -9.72618 -9.54472 -9.17702 -8.31986 -6.29955 0.48854 0.59859 1.27222 1.28680 1.34739 1.43850 1.78457 2.32612 2.95835 3.02641 3.43908 3.76287 4.01821 4.05452 4.14199 4.23498 4.32410 4.34545 4.35460 4.39107 4.42042 4.51137 4.57116 4.69772 4.70467 4.71643 4.84197 4.90796 4.94109 5.17666 5.20919 5.24344 5.31824 5.40320 5.43692 5.53559 5.63736 5.68746 5.70223 5.74682 6.04995 6.21245 6.31951 6.59758 6.78955 6.90552 7.36113 8.83473 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.009919 B = 0.008237 C = 0.005610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.153404 B = 3398.587402 C = 4989.954903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.110 4.110 3 C 0.198 3.802 4 H 0.009 0.991 5 C -0.541 4.541 6 H 0.045 0.955 7 C 0.034 3.966 8 N -0.929 5.929 9 Si 0.908 3.092 10 H -0.282 1.282 11 H -0.285 1.285 12 H -0.233 1.233 13 N -0.656 5.656 14 C 0.105 3.895 15 H 0.066 0.934 16 C -0.064 4.064 17 C -0.092 4.092 18 C -0.123 4.123 19 C -0.129 4.129 20 C -0.132 4.132 21 C -0.126 4.126 22 C -0.124 4.124 23 C 0.467 3.533 24 O -0.508 6.508 25 O -0.370 6.370 26 C 0.028 3.972 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.028 0.972 30 H 0.041 0.959 31 H 0.053 0.947 32 H 0.263 0.737 33 H 0.352 0.648 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.052 0.948 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.891 9.308 7.657 13.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.148 4.148 3 C 0.088 3.912 4 H 0.027 0.973 5 C -0.580 4.580 6 H 0.063 0.937 7 C -0.166 4.166 8 N -0.568 5.568 9 Si 0.733 3.267 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.156 1.156 13 N -0.291 5.291 14 C -0.007 4.007 15 H 0.084 0.916 16 C -0.101 4.101 17 C -0.092 4.092 18 C -0.141 4.141 19 C -0.147 4.147 20 C -0.150 4.150 21 C -0.144 4.144 22 C -0.142 4.142 23 C 0.309 3.691 24 O -0.395 6.395 25 O -0.287 6.287 26 C -0.065 4.065 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.175 0.825 34 H 0.111 0.889 35 H 0.122 0.878 36 H 0.150 0.850 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.071 0.929 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.769 8.992 7.476 14.039 hybrid contribution 0.974 -0.242 -1.276 1.624 sum -6.795 8.750 6.200 12.695 Atomic orbital electron populations 1.21606 0.95457 1.00561 1.01165 1.21754 0.95495 0.97402 1.00150 1.19356 0.91749 0.92042 0.88076 0.97295 1.21836 0.91971 1.40163 1.04032 0.93691 1.25568 0.95464 0.94220 1.01334 1.70110 1.13197 1.43990 1.29515 0.86489 0.82019 0.77685 0.80502 1.20793 1.21140 1.15595 1.60426 1.58227 1.02472 1.07929 1.20899 0.90465 0.91174 0.98149 0.91621 1.20611 0.94513 1.01931 0.93085 1.19770 0.95068 0.95933 0.98411 1.21267 0.92723 1.00483 0.99621 1.21390 0.97536 0.97834 0.97949 1.21428 0.99535 0.95131 0.98869 1.21385 0.92824 0.99874 1.00351 1.21251 0.98191 0.96418 0.98347 1.23989 0.91687 0.78640 0.74818 1.90576 1.38624 1.55224 1.55057 1.86510 1.37527 1.37607 1.67024 1.23518 0.81432 1.02095 0.99439 0.92664 0.91682 0.95269 0.94045 0.92865 0.92756 0.82529 0.88917 0.87819 0.84998 0.84637 0.84625 0.84599 0.85093 0.84992 0.92911 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.01 9.84 71.98 0.71 -4.30 16 2 C -0.11 -4.81 4.83 30.60 0.15 -4.67 16 3 C 0.20 9.19 1.35 44.17 0.06 9.25 16 4 H 0.01 0.45 6.50 -2.38 -0.02 0.44 16 5 C -0.54 -29.41 8.51 25.60 0.22 -29.20 16 6 H 0.04 2.69 8.03 -2.91 -0.02 2.66 16 7 C 0.03 1.93 5.31 84.66 0.45 2.38 16 8 N -0.93 -56.28 13.96 21.45 0.30 -55.98 16 9 Si 0.91 43.72 25.75 68.60 1.77 45.49 16 10 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 11 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 12 H -0.23 -10.57 5.42 99.48 0.54 -10.03 16 13 N -0.66 -26.28 5.08 -477.15 -2.42 -28.70 16 14 C 0.11 3.80 2.35 44.17 0.10 3.90 16 15 H 0.07 2.69 7.46 -2.39 -0.02 2.68 16 16 C -0.06 -1.81 4.96 29.85 0.15 -1.66 16 17 C -0.09 -2.79 4.84 -19.87 -0.10 -2.88 16 18 C -0.12 -3.68 9.70 22.27 0.22 -3.46 16 19 C -0.13 -3.74 10.05 22.27 0.22 -3.52 16 20 C -0.13 -3.78 10.05 22.27 0.22 -3.55 16 21 C -0.13 -3.69 10.05 22.27 0.22 -3.46 16 22 C -0.12 -3.74 8.04 22.27 0.18 -3.56 16 23 C 0.47 16.58 6.84 71.24 0.49 17.07 16 24 O -0.51 -19.92 16.35 21.97 0.36 -19.56 16 25 O -0.37 -11.32 10.57 -51.40 -0.54 -11.86 16 26 C 0.03 0.63 10.56 113.37 1.20 1.82 16 27 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.06 2.53 7.69 -2.39 -0.02 2.51 16 29 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.04 1.89 4.69 -2.39 -0.01 1.88 16 31 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.26 15.11 8.31 -92.70 -0.77 14.33 16 33 H 0.35 13.86 5.28 -89.69 -0.47 13.38 16 34 H 0.09 2.45 8.09 -2.39 -0.02 2.44 16 35 H 0.10 2.46 8.09 -2.39 -0.02 2.44 16 36 H 0.13 3.45 8.06 -2.91 -0.02 3.43 16 37 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 38 H 0.14 3.23 8.06 -2.91 -0.02 3.20 16 39 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16 40 H 0.13 3.62 7.52 -2.91 -0.02 3.60 16 41 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.05 1.25 8.13 -2.39 -0.02 1.23 16 43 H 0.07 1.40 8.13 -2.39 -0.02 1.38 16 Total: -1.00 -67.12 351.33 4.30 -62.82 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: 0.35 Total: 33.63 kcal Atomic # 6 Polarization: -30.33 SS G_CDS: 4.49 Total: -25.84 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -2.12 Total: -84.68 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -0.18 Total: -31.43 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.77 Total: 45.49 kcal Total: -67.12 4.30 -62.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255150052.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.805 kcal (2) G-P(sol) polarization free energy of solvation -67.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds