Wall clock time and date at job start Tue Mar 31 2020 06:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47177 * 2 1 4 4 H 1.08994 * 109.47513 * 54.84019 * 3 2 1 5 5 C 1.50698 * 109.46887 * 174.84311 * 3 2 1 6 6 H 1.08004 * 120.00193 * 120.00359 * 5 3 2 7 7 C 1.37876 * 120.00073 * 299.99330 * 5 3 2 8 8 N 1.31517 * 119.99783 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00216 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47023 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46910 * 120.00237 * 9 7 5 12 12 H 1.48500 * 109.47158 * 239.99984 * 9 7 5 13 13 N 1.46899 * 109.46949 * 294.83736 * 3 2 1 14 14 C 1.46905 * 111.00116 * 154.29251 * 13 3 2 15 15 H 1.09002 * 109.46517 * 41.70545 * 14 13 3 16 16 C 1.52994 * 109.47207 * 161.71147 * 14 13 3 17 17 C 1.50702 * 109.46929 * 294.99943 * 16 14 13 18 18 O 1.20820 * 120.00268 * 359.97438 * 17 16 14 19 19 O 1.34232 * 119.99993 * 180.02562 * 17 16 14 20 20 C 1.45195 * 116.99973 * 179.97438 * 19 17 16 21 21 C 1.50702 * 109.46736 * 281.71164 * 14 13 3 22 22 C 1.38233 * 120.00156 * 312.90018 * 21 14 13 23 23 C 1.38239 * 119.99886 * 179.79038 * 22 21 14 24 24 C 1.38234 * 119.99695 * 0.44197 * 23 22 21 25 25 C 1.38230 * 120.00401 * 359.81924 * 24 23 22 26 26 C 1.38234 * 119.99820 * 359.96557 * 25 24 23 27 27 H 1.09003 * 109.47181 * 66.09542 * 1 2 3 28 28 H 1.09001 * 109.47191 * 186.09252 * 1 2 3 29 29 H 1.08999 * 109.47480 * 306.10202 * 1 2 3 30 30 H 1.09001 * 109.47173 * 239.99759 * 2 1 3 31 31 H 1.09000 * 109.46998 * 119.99695 * 2 1 3 32 32 H 0.97002 * 119.99906 * 179.97438 * 8 7 5 33 33 H 1.00901 * 110.99785 * 30.34040 * 13 3 2 34 34 H 1.09000 * 109.47646 * 55.00189 * 16 14 13 35 35 H 1.09003 * 109.47420 * 175.00331 * 16 14 13 36 36 H 1.08996 * 109.47341 * 60.00493 * 20 19 17 37 37 H 1.09005 * 109.46941 * 179.97438 * 20 19 17 38 38 H 1.08997 * 109.47233 * 299.99727 * 20 19 17 39 39 H 1.07997 * 119.99856 * 0.02562 * 22 21 14 40 40 H 1.07994 * 120.00189 * 180.27879 * 23 22 21 41 41 H 1.08008 * 119.99625 * 179.82827 * 24 23 22 42 42 H 1.08000 * 120.00557 * 180.02562 * 25 24 23 43 43 H 1.07999 * 119.99850 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6032 1.9824 0.8401 5 6 3.5415 1.4443 0.1277 6 1 4.1489 1.8882 -0.6472 7 6 4.1400 0.8795 1.2340 8 7 3.4004 0.3387 2.1775 9 14 6.0013 0.8824 1.3926 10 1 6.5981 1.5473 0.2065 11 1 6.3921 1.6191 2.6214 12 1 6.4931 -0.5162 1.4765 13 7 1.6547 2.0980 -1.2569 14 6 1.5591 3.5537 -1.0837 15 1 2.3913 3.9022 -0.4720 16 6 1.6119 4.2348 -2.4527 17 6 2.9607 3.9958 -3.0809 18 8 3.7944 3.3477 -2.4937 19 8 3.2364 4.5038 -4.2924 20 6 4.5556 4.2341 -4.8356 21 6 0.2583 3.8942 -0.4031 22 6 -0.9221 3.3262 -0.8446 23 6 -2.1147 3.6352 -0.2174 24 6 -2.1280 4.5192 0.8453 25 6 -0.9483 5.0912 1.2833 26 6 0.2449 4.7788 0.6590 27 1 -0.3634 0.4164 -0.9395 28 1 -0.3634 -1.0219 0.1091 29 1 -0.3634 0.6055 0.8303 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8215 -0.0590 2.9556 33 1 0.7899 1.7186 -1.6123 34 1 0.8338 3.8215 -3.0945 35 1 1.4521 5.3062 -2.3319 36 1 4.6963 3.1575 -4.9307 37 1 4.6467 4.7001 -5.8169 38 1 5.3140 4.6422 -4.1675 39 1 -0.9121 2.6382 -1.6770 40 1 -3.0363 3.1881 -0.5594 41 1 -3.0601 4.7627 1.3335 42 1 -0.9586 5.7815 2.1138 43 1 1.1666 5.2255 1.0015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255150285.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:18 Heat of formation + Delta-G solvation = -62.070014 kcal Electronic energy + Delta-G solvation = -24265.034456 eV Core-core repulsion = 20889.186937 eV Total energy + Delta-G solvation = -3375.847518 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.04276 -39.14765 -36.59902 -35.68138 -33.64163 -31.57576 -30.64703 -29.82946 -29.47049 -27.24387 -26.07684 -23.74278 -22.74146 -22.15940 -20.96006 -19.58593 -19.44322 -17.35164 -16.57318 -16.18062 -16.08391 -15.89604 -15.07060 -14.82522 -14.42110 -14.12034 -13.79361 -13.27302 -13.14408 -13.12472 -13.04089 -12.55172 -12.38462 -12.17733 -11.82347 -11.72046 -11.48820 -11.12394 -11.02522 -10.91717 -10.74025 -10.53106 -10.41965 -10.36053 -9.87855 -9.69993 -9.60450 -9.55389 -8.95535 -8.65466 -8.42127 -8.20273 -7.18412 -5.81767 -3.82193 1.61317 1.66570 2.87032 3.13805 3.40214 3.47870 3.57100 4.06229 4.58690 4.98943 5.04381 5.18355 5.20048 5.27190 5.34335 5.37042 5.42993 5.47744 5.57186 5.64516 5.76921 5.77251 5.89808 6.03885 6.16297 6.21558 6.25338 6.26789 6.45723 6.49591 6.70817 6.73803 6.86447 6.90645 6.95443 7.17771 7.26465 7.27041 7.57880 7.86545 8.11604 8.35966 8.41410 8.50992 8.86404 9.36211 9.81888 11.24360 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.009656 B = 0.007650 C = 0.005107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.172431 B = 3659.365701 C = 5481.780254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C 0.224 3.776 4 H 0.005 0.995 5 C -0.481 4.481 6 H 0.079 0.921 7 C 0.050 3.950 8 N -0.902 5.902 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.288 1.288 13 N -0.665 5.665 14 C 0.139 3.861 15 H 0.101 0.899 16 C -0.093 4.093 17 C 0.449 3.551 18 O -0.452 6.452 19 O -0.377 6.377 20 C 0.039 3.961 21 C -0.096 4.096 22 C -0.112 4.112 23 C -0.120 4.120 24 C -0.129 4.129 25 C -0.121 4.121 26 C -0.106 4.106 27 H 0.033 0.967 28 H 0.034 0.966 29 H 0.042 0.958 30 H 0.038 0.962 31 H 0.099 0.901 32 H 0.255 0.745 33 H 0.313 0.687 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.058 0.942 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.369 9.414 -8.508 15.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.165 4.165 3 C 0.117 3.883 4 H 0.022 0.978 5 C -0.520 4.520 6 H 0.097 0.903 7 C -0.149 4.149 8 N -0.544 5.544 9 Si 0.719 3.281 10 H -0.197 1.197 11 H -0.216 1.216 12 H -0.215 1.215 13 N -0.295 5.295 14 C 0.028 3.972 15 H 0.119 0.881 16 C -0.132 4.132 17 C 0.288 3.712 18 O -0.334 6.334 19 O -0.295 6.295 20 C -0.055 4.055 21 C -0.098 4.098 22 C -0.131 4.131 23 C -0.138 4.138 24 C -0.148 4.148 25 C -0.139 4.139 26 C -0.125 4.125 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.117 0.883 32 H 0.065 0.935 33 H 0.132 0.868 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.079 0.921 37 H 0.110 0.890 38 H 0.077 0.923 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.362 9.095 -8.410 14.410 hybrid contribution 0.266 -0.167 0.775 0.837 sum -7.096 8.928 -7.635 13.724 Atomic orbital electron populations 1.21872 0.99673 0.99451 0.99397 1.21776 0.91099 1.00635 1.02970 1.19117 0.95571 0.89562 0.84042 0.97786 1.21540 0.91367 1.34824 1.04315 0.90313 1.24959 0.97698 0.96177 0.96096 1.69901 1.34305 1.40363 1.09803 0.86558 0.86594 0.77323 0.77660 1.19720 1.21569 1.21461 1.60954 1.34967 0.99997 1.33537 1.20379 0.93256 0.91382 0.92196 0.88102 1.21392 0.92067 1.02445 0.97267 1.23602 0.90904 0.77364 0.79292 1.90826 1.47723 1.33518 1.61295 1.86471 1.35981 1.71815 1.35273 1.23100 0.82120 1.02014 0.98312 1.20864 0.96274 0.96086 0.96543 1.20928 0.92200 0.99782 1.00176 1.21031 0.97734 0.98421 0.96658 1.21044 0.97880 0.98238 0.97612 1.21098 0.92788 1.00263 0.99727 1.21126 0.97983 0.97627 0.95750 0.94844 0.94662 0.93895 0.94285 0.88262 0.93528 0.86790 0.88568 0.88583 0.92069 0.89018 0.92334 0.86400 0.86571 0.86709 0.86517 0.86084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.63 37.15 0.36 -2.53 16 2 C -0.13 -3.03 5.36 -26.73 -0.14 -3.17 16 3 C 0.22 5.55 1.84 -68.87 -0.13 5.42 16 4 H 0.00 0.12 7.36 -51.93 -0.38 -0.26 16 5 C -0.48 -13.58 8.52 -34.44 -0.29 -13.87 16 6 H 0.08 2.33 6.36 -52.48 -0.33 2.00 16 7 C 0.05 1.42 5.29 -17.82 -0.09 1.32 16 8 N -0.90 -26.37 11.29 55.43 0.63 -25.74 16 9 Si 0.89 22.57 29.54 -169.99 -5.02 17.55 16 10 H -0.27 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 N -0.66 -13.69 5.16 -102.17 -0.53 -14.22 16 14 C 0.14 2.50 1.64 -68.86 -0.11 2.38 16 15 H 0.10 2.12 7.34 -51.93 -0.38 1.74 16 16 C -0.09 -1.37 5.39 -27.88 -0.15 -1.52 16 17 C 0.45 7.70 7.82 36.01 0.28 7.98 16 18 O -0.45 -9.73 13.70 -18.75 -0.26 -9.99 16 19 O -0.38 -5.61 10.57 -39.26 -0.41 -6.02 16 20 C 0.04 0.48 10.56 101.05 1.07 1.54 16 21 C -0.10 -1.54 4.23 -104.62 -0.44 -1.99 16 22 C -0.11 -1.64 9.04 -39.58 -0.36 -2.00 16 23 C -0.12 -1.59 10.05 -39.58 -0.40 -1.98 16 24 C -0.13 -1.67 10.05 -39.59 -0.40 -2.07 16 25 C -0.12 -1.66 10.05 -39.59 -0.40 -2.06 16 26 C -0.11 -1.66 9.67 -39.58 -0.38 -2.04 16 27 H 0.03 0.58 6.65 -51.93 -0.35 0.23 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.10 2.70 5.95 -51.93 -0.31 2.39 16 32 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.31 5.88 4.69 -39.29 -0.18 5.70 16 34 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 39 H 0.12 1.60 6.89 -52.49 -0.36 1.24 16 40 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.11 1.19 8.06 -52.48 -0.42 0.77 16 42 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 43 H 0.12 1.83 7.99 -52.49 -0.42 1.41 16 LS Contribution 351.52 15.07 5.30 5.30 Total: -1.00 -32.00 351.52 -8.39 -40.39 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -6.50 Total: 7.32 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -1.59 Total: -14.57 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.10 Total: -39.96 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.67 Total: -16.02 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.00 -8.39 -40.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255150285.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.684 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds