Wall clock time and date at job start Tue Mar 31 2020 06:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47177 * 2 1 4 4 H 1.08994 * 109.47513 * 54.84019 * 3 2 1 5 5 C 1.50698 * 109.46887 * 174.84311 * 3 2 1 6 6 H 1.08004 * 120.00193 * 120.00359 * 5 3 2 7 7 C 1.37876 * 120.00073 * 299.99330 * 5 3 2 8 8 N 1.31517 * 119.99783 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00216 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47023 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46910 * 120.00237 * 9 7 5 12 12 H 1.48500 * 109.47158 * 239.99984 * 9 7 5 13 13 N 1.46899 * 109.46949 * 294.83736 * 3 2 1 14 14 C 1.46905 * 111.00116 * 154.29251 * 13 3 2 15 15 H 1.09002 * 109.46517 * 41.70545 * 14 13 3 16 16 C 1.52994 * 109.47207 * 161.71147 * 14 13 3 17 17 C 1.50702 * 109.46929 * 294.99943 * 16 14 13 18 18 O 1.20820 * 120.00268 * 359.97438 * 17 16 14 19 19 O 1.34232 * 119.99993 * 180.02562 * 17 16 14 20 20 C 1.45195 * 116.99973 * 179.97438 * 19 17 16 21 21 C 1.50702 * 109.46736 * 281.71164 * 14 13 3 22 22 C 1.38233 * 120.00156 * 312.90018 * 21 14 13 23 23 C 1.38239 * 119.99886 * 179.79038 * 22 21 14 24 24 C 1.38234 * 119.99695 * 0.44197 * 23 22 21 25 25 C 1.38230 * 120.00401 * 359.81924 * 24 23 22 26 26 C 1.38234 * 119.99820 * 359.96557 * 25 24 23 27 27 H 1.09003 * 109.47181 * 66.09542 * 1 2 3 28 28 H 1.09001 * 109.47191 * 186.09252 * 1 2 3 29 29 H 1.08999 * 109.47480 * 306.10202 * 1 2 3 30 30 H 1.09001 * 109.47173 * 239.99759 * 2 1 3 31 31 H 1.09000 * 109.46998 * 119.99695 * 2 1 3 32 32 H 0.97002 * 119.99906 * 179.97438 * 8 7 5 33 33 H 1.00901 * 110.99785 * 30.34040 * 13 3 2 34 34 H 1.09000 * 109.47646 * 55.00189 * 16 14 13 35 35 H 1.09003 * 109.47420 * 175.00331 * 16 14 13 36 36 H 1.08996 * 109.47341 * 60.00493 * 20 19 17 37 37 H 1.09005 * 109.46941 * 179.97438 * 20 19 17 38 38 H 1.08997 * 109.47233 * 299.99727 * 20 19 17 39 39 H 1.07997 * 119.99856 * 0.02562 * 22 21 14 40 40 H 1.07994 * 120.00189 * 180.27879 * 23 22 21 41 41 H 1.08008 * 119.99625 * 179.82827 * 24 23 22 42 42 H 1.08000 * 120.00557 * 180.02562 * 25 24 23 43 43 H 1.07999 * 119.99850 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6032 1.9824 0.8401 5 6 3.5415 1.4443 0.1277 6 1 4.1489 1.8882 -0.6472 7 6 4.1400 0.8795 1.2340 8 7 3.4004 0.3387 2.1775 9 14 6.0013 0.8824 1.3926 10 1 6.5981 1.5473 0.2065 11 1 6.3921 1.6191 2.6214 12 1 6.4931 -0.5162 1.4765 13 7 1.6547 2.0980 -1.2569 14 6 1.5591 3.5537 -1.0837 15 1 2.3913 3.9022 -0.4720 16 6 1.6119 4.2348 -2.4527 17 6 2.9607 3.9958 -3.0809 18 8 3.7944 3.3477 -2.4937 19 8 3.2364 4.5038 -4.2924 20 6 4.5556 4.2341 -4.8356 21 6 0.2583 3.8942 -0.4031 22 6 -0.9221 3.3262 -0.8446 23 6 -2.1147 3.6352 -0.2174 24 6 -2.1280 4.5192 0.8453 25 6 -0.9483 5.0912 1.2833 26 6 0.2449 4.7788 0.6590 27 1 -0.3634 0.4164 -0.9395 28 1 -0.3634 -1.0219 0.1091 29 1 -0.3634 0.6055 0.8303 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8215 -0.0590 2.9556 33 1 0.7899 1.7186 -1.6123 34 1 0.8338 3.8215 -3.0945 35 1 1.4521 5.3062 -2.3319 36 1 4.6963 3.1575 -4.9307 37 1 4.6467 4.7001 -5.8169 38 1 5.3140 4.6422 -4.1675 39 1 -0.9121 2.6382 -1.6770 40 1 -3.0363 3.1881 -0.5594 41 1 -3.0601 4.7627 1.3335 42 1 -0.9586 5.7815 2.1138 43 1 1.1666 5.2255 1.0015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255150285.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:18 Heat of formation + Delta-G solvation = -80.727128 kcal Electronic energy + Delta-G solvation = -24265.843489 eV Core-core repulsion = 20889.186937 eV Total energy + Delta-G solvation = -3376.656552 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.37708 -40.35313 -38.07388 -37.15803 -35.30088 -33.58034 -31.73831 -31.05260 -30.96273 -28.54510 -27.88183 -25.14745 -24.45405 -23.33972 -22.20112 -21.35580 -20.89614 -18.65076 -18.23992 -17.66925 -17.45412 -17.24301 -16.76422 -16.10610 -15.98806 -15.51012 -15.30311 -14.79640 -14.60132 -14.34940 -14.24481 -14.09700 -13.73659 -13.51363 -13.33876 -13.18928 -12.93878 -12.83199 -12.62734 -12.51539 -12.33468 -12.06531 -11.92118 -11.69134 -11.61109 -11.52364 -11.38625 -11.18865 -10.92336 -10.37783 -9.74195 -9.58814 -8.90543 -8.00473 -6.07374 0.51064 0.57839 1.34664 1.36893 1.50963 1.52254 1.95550 2.46571 2.96381 3.24318 3.57484 3.82716 4.02618 4.06888 4.21844 4.33152 4.37151 4.40748 4.41178 4.48334 4.52610 4.60055 4.67007 4.72217 4.73967 4.77265 4.82430 4.98960 5.14378 5.17933 5.23407 5.30412 5.42750 5.57599 5.62180 5.64657 5.67916 5.79022 5.85976 6.00833 6.19838 6.46543 6.58356 7.00737 7.08673 7.21022 7.60106 9.02942 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.009656 B = 0.007650 C = 0.005107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.172431 B = 3659.365701 C = 5481.780254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.122 4.122 3 C 0.239 3.761 4 H -0.029 1.029 5 C -0.494 4.494 6 H 0.059 0.941 7 C 0.005 3.995 8 N -0.923 5.923 9 Si 0.944 3.056 10 H -0.280 1.280 11 H -0.283 1.283 12 H -0.280 1.280 13 N -0.666 5.666 14 C 0.145 3.855 15 H 0.057 0.943 16 C -0.086 4.086 17 C 0.451 3.549 18 O -0.506 6.506 19 O -0.370 6.370 20 C 0.033 3.967 21 C -0.112 4.112 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.128 4.128 25 C -0.125 4.125 26 C -0.130 4.130 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.064 0.936 32 H 0.255 0.745 33 H 0.326 0.674 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.050 0.950 37 H 0.134 0.866 38 H 0.051 0.949 39 H 0.129 0.871 40 H 0.146 0.854 41 H 0.146 0.854 42 H 0.136 0.864 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.592 10.105 -9.748 17.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.161 4.161 3 C 0.131 3.869 4 H -0.012 1.012 5 C -0.533 4.533 6 H 0.077 0.923 7 C -0.191 4.191 8 N -0.565 5.565 9 Si 0.771 3.229 10 H -0.205 1.205 11 H -0.209 1.209 12 H -0.206 1.206 13 N -0.297 5.297 14 C 0.034 3.966 15 H 0.075 0.925 16 C -0.123 4.123 17 C 0.293 3.707 18 O -0.391 6.391 19 O -0.288 6.288 20 C -0.061 4.061 21 C -0.114 4.114 22 C -0.137 4.137 23 C -0.137 4.137 24 C -0.145 4.145 25 C -0.143 4.143 26 C -0.149 4.149 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.145 0.855 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.069 0.931 37 H 0.152 0.848 38 H 0.070 0.930 39 H 0.147 0.853 40 H 0.164 0.836 41 H 0.164 0.836 42 H 0.154 0.846 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.603 9.811 -9.679 16.797 hybrid contribution 0.950 -0.303 1.115 1.496 sum -8.653 9.508 -8.564 15.447 Atomic orbital electron populations 1.21694 0.96013 1.00730 1.00435 1.21598 0.94375 0.99360 1.00791 1.18725 0.93437 0.90043 0.84694 1.01192 1.21769 0.93429 1.34335 1.03799 0.92288 1.25588 1.01295 0.96213 0.96053 1.70017 1.35497 1.40935 1.10071 0.85719 0.82392 0.77464 0.77282 1.20493 1.20892 1.20647 1.60778 1.35919 1.01674 1.31349 1.20170 0.93036 0.89668 0.93696 0.92482 1.21407 0.91428 1.03963 0.95532 1.24085 0.91115 0.76041 0.79421 1.90819 1.49479 1.36147 1.62691 1.86466 1.37201 1.71088 1.34052 1.23377 0.80812 1.01871 1.00029 1.20662 0.95874 0.97525 0.97289 1.21075 0.92058 0.99848 1.00751 1.21409 0.98238 0.97875 0.96132 1.21455 0.98622 0.97241 0.97229 1.21369 0.92431 1.00530 1.00010 1.21217 0.98657 0.98587 0.96469 0.92137 0.92803 0.94824 0.95039 0.91740 0.93552 0.85457 0.85859 0.85717 0.93114 0.84793 0.92985 0.85302 0.83581 0.83647 0.84602 0.87234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.99 9.63 71.98 0.69 -4.30 16 2 C -0.12 -5.97 5.36 30.59 0.16 -5.80 16 3 C 0.24 12.26 1.84 44.17 0.08 12.34 16 4 H -0.03 -1.69 7.36 -2.39 -0.02 -1.71 16 5 C -0.49 -29.11 8.52 25.60 0.22 -28.89 16 6 H 0.06 3.67 6.36 -2.91 -0.02 3.65 16 7 C 0.01 0.30 5.29 84.65 0.45 0.75 16 8 N -0.92 -55.60 11.29 21.45 0.24 -55.36 16 9 Si 0.94 47.81 29.54 68.60 2.03 49.83 16 10 H -0.28 -14.38 7.11 99.48 0.71 -13.67 16 11 H -0.28 -13.94 7.11 99.48 0.71 -13.23 16 12 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 13 N -0.67 -27.86 5.16 -477.16 -2.46 -30.33 16 14 C 0.15 5.31 1.64 44.17 0.07 5.39 16 15 H 0.06 2.57 7.34 -2.39 -0.02 2.55 16 16 C -0.09 -2.43 5.39 29.85 0.16 -2.27 16 17 C 0.45 15.48 7.82 71.24 0.56 16.04 16 18 O -0.51 -22.63 13.70 21.98 0.30 -22.33 16 19 O -0.37 -10.59 10.57 -51.44 -0.54 -11.14 16 20 C 0.03 0.77 10.56 113.37 1.20 1.97 16 21 C -0.11 -3.57 4.23 -19.87 -0.08 -3.65 16 22 C -0.12 -3.20 9.04 22.27 0.20 -2.99 16 23 C -0.12 -2.71 10.05 22.27 0.22 -2.49 16 24 C -0.13 -2.88 10.05 22.27 0.22 -2.65 16 25 C -0.13 -3.25 10.05 22.27 0.22 -3.03 16 26 C -0.13 -4.10 9.67 22.27 0.22 -3.89 16 27 H 0.06 1.95 6.65 -2.39 -0.02 1.93 16 28 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.06 3.61 5.95 -2.39 -0.01 3.59 16 32 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 33 H 0.33 11.92 4.69 -89.69 -0.42 11.50 16 34 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 35 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 36 H 0.05 1.32 8.13 -2.39 -0.02 1.30 16 37 H 0.13 2.01 8.14 -2.38 -0.02 1.99 16 38 H 0.05 1.30 8.13 -2.39 -0.02 1.28 16 39 H 0.13 3.10 6.89 -2.91 -0.02 3.08 16 40 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16 41 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 42 H 0.14 2.89 8.06 -2.91 -0.02 2.86 16 43 H 0.11 3.54 7.99 -2.91 -0.02 3.52 16 Total: -1.00 -72.93 351.52 4.74 -68.19 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 0.58 Total: 24.61 kcal Atomic # 6 Polarization: -28.08 SS G_CDS: 4.59 Total: -23.49 kcal Atomic # 7 Polarization: -83.47 SS G_CDS: -2.22 Total: -85.69 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -0.24 Total: -33.47 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.03 Total: 49.83 kcal Total: -72.93 4.74 -68.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255150285.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.535 kcal (2) G-P(sol) polarization free energy of solvation -72.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds