Wall clock time and date at job start Tue Mar 31 2020 06:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47015 * 2 1 4 4 H 1.09004 * 109.47095 * 304.56964 * 3 2 1 5 5 C 1.50699 * 109.47355 * 184.57286 * 3 2 1 6 6 H 1.08005 * 119.99702 * 243.48077 * 5 3 2 7 7 C 1.37868 * 120.00138 * 63.47269 * 5 3 2 8 8 N 1.31518 * 120.00266 * 196.47823 * 7 5 3 9 9 Si 1.86803 * 120.00022 * 16.48034 * 7 5 3 10 10 H 1.48500 * 109.47126 * 88.10500 * 9 7 5 11 11 H 1.48501 * 109.47029 * 208.10637 * 9 7 5 12 12 H 1.48493 * 109.47028 * 328.10457 * 9 7 5 13 13 N 1.46896 * 109.47238 * 64.56665 * 3 2 1 14 14 C 1.46893 * 111.00468 * 204.12076 * 13 3 2 15 15 H 1.09005 * 109.47022 * 32.82291 * 14 13 3 16 16 C 1.53005 * 109.47516 * 152.82021 * 14 13 3 17 17 C 1.50699 * 109.46925 * 294.41234 * 16 14 13 18 18 O 1.20833 * 120.00273 * 3.70507 * 17 16 14 19 19 O 1.34232 * 120.00160 * 183.70125 * 17 16 14 20 20 C 1.45194 * 117.00269 * 180.02562 * 19 17 16 21 21 C 1.50703 * 109.47718 * 272.82312 * 14 13 3 22 22 C 1.38238 * 119.99503 * 319.72364 * 21 14 13 23 23 C 1.38234 * 119.99745 * 179.80400 * 22 21 14 24 24 C 1.38238 * 119.99864 * 0.40479 * 23 22 21 25 25 C 1.38231 * 119.99978 * 359.84971 * 24 23 22 26 26 C 1.38232 * 120.00063 * 139.99638 * 21 14 13 27 27 H 1.09000 * 109.46771 * 184.21462 * 1 2 3 28 28 H 1.09000 * 109.47631 * 304.22198 * 1 2 3 29 29 H 1.09008 * 109.47336 * 64.22013 * 1 2 3 30 30 H 1.09000 * 109.47210 * 240.00472 * 2 1 3 31 31 H 1.08998 * 109.46883 * 119.99650 * 2 1 3 32 32 H 0.96999 * 120.00356 * 180.02562 * 8 7 5 33 33 H 1.00910 * 110.99878 * 80.17189 * 13 3 2 34 34 H 1.09002 * 109.46688 * 54.40782 * 16 14 13 35 35 H 1.08993 * 109.47518 * 174.41222 * 16 14 13 36 36 H 1.08998 * 109.47536 * 59.99678 * 20 19 17 37 37 H 1.09001 * 109.47002 * 180.02562 * 20 19 17 38 38 H 1.09003 * 109.46981 * 300.00007 * 20 19 17 39 39 H 1.08000 * 119.99914 * 0.02562 * 22 21 14 40 40 H 1.08001 * 120.00019 * 180.22908 * 23 22 21 41 41 H 1.07997 * 119.99856 * 179.83320 * 24 23 22 42 42 H 1.08007 * 120.00176 * 179.97438 * 25 24 23 43 43 H 1.07998 * 120.00216 * 359.97438 * 26 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6113 1.9794 -0.8462 5 6 3.5427 1.4441 -0.1133 6 1 4.1444 1.8399 0.6915 7 6 4.1493 0.9402 -1.2441 8 7 5.4294 0.6388 -1.2250 9 14 3.1531 0.6854 -2.8037 10 1 3.1637 1.9341 -3.6073 11 1 3.7496 -0.4191 -3.5972 12 1 1.7542 0.3386 -2.4463 13 7 1.6424 2.1024 1.2507 14 6 1.5850 3.5605 1.0816 15 1 1.2730 3.7962 0.0640 16 6 0.5793 4.1498 2.0727 17 6 -0.8062 3.6664 1.7296 18 8 -0.9645 2.8741 0.8311 19 8 -1.8645 4.1159 2.4223 20 6 -3.1687 3.6069 2.0373 21 6 2.9479 4.1502 1.3384 22 6 3.7270 3.6654 2.3723 23 6 4.9788 4.2035 2.6054 24 6 5.4480 5.2321 1.8099 25 6 4.6667 5.7204 0.7794 26 6 3.4165 5.1796 0.5438 27 1 -0.3633 -1.0249 0.0755 28 1 -0.3634 0.5779 0.8497 29 1 -0.3634 0.4470 -0.9254 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.8562 0.2846 -2.0207 33 1 2.2627 1.8502 2.0057 34 1 0.8356 3.8310 3.0831 35 1 0.6087 5.2379 2.0165 36 1 -3.1836 2.5229 2.1505 37 1 -3.9341 4.0496 2.6747 38 1 -3.3676 3.8664 0.9975 39 1 3.3591 2.8638 2.9956 40 1 5.5890 3.8223 3.4108 41 1 6.4248 5.6543 1.9937 42 1 5.0331 6.5243 0.1581 43 1 2.8062 5.5610 -0.2614 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255150385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:21 Heat of formation + Delta-G solvation = -57.603602 kcal Electronic energy + Delta-G solvation = -24420.243299 eV Core-core repulsion = 21044.589459 eV Total energy + Delta-G solvation = -3375.653840 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.18776 -39.02966 -36.64737 -35.81623 -33.67923 -31.81452 -30.48200 -29.82908 -29.54389 -27.48327 -26.31264 -23.67187 -22.47014 -21.90785 -20.98780 -19.70640 -19.58212 -17.50116 -16.92456 -16.32487 -16.21307 -16.10226 -15.16238 -14.70896 -14.41771 -13.91113 -13.72669 -13.44450 -13.25891 -12.96472 -12.83549 -12.67121 -12.31865 -12.18628 -11.96217 -11.86271 -11.44100 -11.31952 -11.03815 -10.96230 -10.66315 -10.57001 -10.55933 -10.36797 -10.14407 -10.01271 -9.62897 -9.40460 -9.11536 -8.40099 -8.31386 -8.16813 -7.31275 -6.04888 -3.98334 1.88083 1.94046 2.65314 2.99389 3.33184 3.42407 3.48893 4.31138 4.49080 4.90563 5.05168 5.17886 5.22048 5.25912 5.29820 5.36086 5.41804 5.52154 5.56447 5.62236 5.70480 5.90325 6.04073 6.09499 6.17026 6.29400 6.34804 6.48365 6.54349 6.55406 6.68426 6.90390 6.95131 6.97832 6.99958 7.08617 7.24872 7.34714 7.49679 7.52691 7.68254 8.09490 8.19639 8.43052 8.58584 9.05719 9.63917 11.07735 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011017 B = 0.007917 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.933000 B = 3535.941725 C = 5415.630535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.108 4.108 3 C 0.196 3.804 4 H 0.027 0.973 5 C -0.546 4.546 6 H 0.080 0.920 7 C 0.081 3.919 8 N -0.891 5.891 9 Si 0.854 3.146 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.248 1.248 13 N -0.663 5.663 14 C 0.144 3.856 15 H 0.086 0.914 16 C -0.096 4.096 17 C 0.456 3.544 18 O -0.471 6.471 19 O -0.373 6.373 20 C 0.038 3.962 21 C -0.078 4.078 22 C -0.101 4.101 23 C -0.115 4.115 24 C -0.127 4.127 25 C -0.120 4.120 26 C -0.109 4.109 27 H 0.022 0.978 28 H 0.068 0.932 29 H 0.035 0.965 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.260 0.740 33 H 0.332 0.668 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.060 0.940 37 H 0.093 0.907 38 H 0.058 0.942 39 H 0.118 0.882 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.610 9.416 8.046 15.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.147 4.147 3 C 0.087 3.913 4 H 0.045 0.955 5 C -0.584 4.584 6 H 0.098 0.902 7 C -0.122 4.122 8 N -0.528 5.528 9 Si 0.681 3.319 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.172 1.172 13 N -0.292 5.292 14 C 0.033 3.967 15 H 0.104 0.896 16 C -0.134 4.134 17 C 0.298 3.702 18 O -0.355 6.355 19 O -0.291 6.291 20 C -0.056 4.056 21 C -0.080 4.080 22 C -0.119 4.119 23 C -0.133 4.133 24 C -0.145 4.145 25 C -0.138 4.138 26 C -0.128 4.128 27 H 0.041 0.959 28 H 0.087 0.913 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.151 0.849 34 H 0.120 0.880 35 H 0.116 0.884 36 H 0.079 0.921 37 H 0.111 0.889 38 H 0.077 0.923 39 H 0.136 0.864 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.237 8.949 7.533 15.544 hybrid contribution 0.682 -0.180 -1.283 1.464 sum -9.555 8.768 6.250 14.396 Atomic orbital electron populations 1.21709 0.97582 0.98421 1.01800 1.21803 0.93638 0.98932 1.00290 1.19444 0.93888 0.90662 0.87326 0.95534 1.21809 0.90481 1.41396 1.04706 0.90156 1.24878 0.94527 0.94127 0.98643 1.70008 1.11279 1.42747 1.28805 0.87374 0.82465 0.77722 0.84313 1.20964 1.21739 1.17208 1.60916 1.55763 1.03421 1.09137 1.20221 0.88516 0.89884 0.98120 0.89580 1.21480 0.87662 1.01688 1.02607 1.23711 0.86975 0.79369 0.80180 1.90721 1.85696 1.30182 1.28877 1.86500 1.16450 1.66462 1.59698 1.23119 0.81415 0.99967 1.01076 1.20392 0.97196 0.95367 0.95024 1.20794 0.94549 0.98896 0.97668 1.20972 0.95829 0.96717 0.99801 1.20974 0.99229 0.97862 0.96468 1.20979 0.94750 1.00295 0.97802 1.20906 0.96244 0.96708 0.98918 0.95882 0.91306 0.94619 0.93216 0.93362 0.93002 0.84868 0.87955 0.88429 0.92084 0.88879 0.92342 0.86447 0.86767 0.86993 0.86927 0.86816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.79 37.16 0.36 -2.44 16 2 C -0.11 -2.45 4.92 -26.73 -0.13 -2.58 16 3 C 0.20 4.53 1.53 -68.87 -0.11 4.43 16 4 H 0.03 0.67 6.19 -51.93 -0.32 0.35 16 5 C -0.55 -14.57 8.18 -34.44 -0.28 -14.86 16 6 H 0.08 2.28 6.12 -52.48 -0.32 1.96 16 7 C 0.08 2.31 5.32 -17.82 -0.09 2.21 16 8 N -0.89 -27.01 13.96 55.43 0.77 -26.24 16 9 Si 0.85 21.62 25.82 -169.99 -4.39 17.23 16 10 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 12 H -0.25 -6.04 5.47 56.52 0.31 -5.73 16 13 N -0.66 -12.83 4.50 -102.17 -0.46 -13.29 16 14 C 0.14 2.46 1.79 -68.86 -0.12 2.33 16 15 H 0.09 1.63 7.11 -51.93 -0.37 1.26 16 16 C -0.10 -1.29 5.46 -27.88 -0.15 -1.45 16 17 C 0.46 6.84 7.84 36.01 0.28 7.12 16 18 O -0.47 -8.52 13.60 -18.76 -0.26 -8.78 16 19 O -0.37 -4.89 10.56 -39.26 -0.41 -5.30 16 20 C 0.04 0.40 10.56 101.05 1.07 1.46 16 21 C -0.08 -1.34 3.79 -104.62 -0.40 -1.74 16 22 C -0.10 -1.69 7.65 -39.58 -0.30 -2.00 16 23 C -0.12 -1.86 10.05 -39.58 -0.40 -2.26 16 24 C -0.13 -2.00 10.05 -39.58 -0.40 -2.39 16 25 C -0.12 -1.91 10.05 -39.58 -0.40 -2.31 16 26 C -0.11 -1.83 9.67 -39.58 -0.38 -2.21 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 1.39 6.17 -51.93 -0.32 1.07 16 29 H 0.03 0.74 8.14 -51.92 -0.42 0.32 16 30 H 0.05 1.20 4.81 -51.93 -0.25 0.95 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.33 6.38 6.01 -39.29 -0.24 6.14 16 34 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 0.66 8.13 -51.93 -0.42 0.23 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 39 H 0.12 1.85 6.54 -52.49 -0.34 1.51 16 40 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 41 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 42 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 43 H 0.11 1.74 8.04 -52.49 -0.42 1.32 16 LS Contribution 343.33 15.07 5.17 5.17 Total: -1.00 -31.72 343.33 -7.48 -39.20 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -6.46 Total: 8.67 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -1.45 Total: -16.68 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.31 Total: -39.53 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.67 Total: -14.08 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.39 Total: 17.23 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.72 -7.48 -39.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255150385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.400 kcal (2) G-P(sol) polarization free energy of solvation -31.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds