Wall clock time and date at job start Tue Mar 31 2020 06:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47015 * 2 1 4 4 H 1.09004 * 109.47095 * 304.56964 * 3 2 1 5 5 C 1.50699 * 109.47355 * 184.57286 * 3 2 1 6 6 H 1.08005 * 119.99702 * 243.48077 * 5 3 2 7 7 C 1.37868 * 120.00138 * 63.47269 * 5 3 2 8 8 N 1.31518 * 120.00266 * 196.47823 * 7 5 3 9 9 Si 1.86803 * 120.00022 * 16.48034 * 7 5 3 10 10 H 1.48500 * 109.47126 * 88.10500 * 9 7 5 11 11 H 1.48501 * 109.47029 * 208.10637 * 9 7 5 12 12 H 1.48493 * 109.47028 * 328.10457 * 9 7 5 13 13 N 1.46896 * 109.47238 * 64.56665 * 3 2 1 14 14 C 1.46893 * 111.00468 * 204.12076 * 13 3 2 15 15 H 1.09005 * 109.47022 * 32.82291 * 14 13 3 16 16 C 1.53005 * 109.47516 * 152.82021 * 14 13 3 17 17 C 1.50699 * 109.46925 * 294.41234 * 16 14 13 18 18 O 1.20833 * 120.00273 * 3.70507 * 17 16 14 19 19 O 1.34232 * 120.00160 * 183.70125 * 17 16 14 20 20 C 1.45194 * 117.00269 * 180.02562 * 19 17 16 21 21 C 1.50703 * 109.47718 * 272.82312 * 14 13 3 22 22 C 1.38238 * 119.99503 * 319.72364 * 21 14 13 23 23 C 1.38234 * 119.99745 * 179.80400 * 22 21 14 24 24 C 1.38238 * 119.99864 * 0.40479 * 23 22 21 25 25 C 1.38231 * 119.99978 * 359.84971 * 24 23 22 26 26 C 1.38232 * 120.00063 * 139.99638 * 21 14 13 27 27 H 1.09000 * 109.46771 * 184.21462 * 1 2 3 28 28 H 1.09000 * 109.47631 * 304.22198 * 1 2 3 29 29 H 1.09008 * 109.47336 * 64.22013 * 1 2 3 30 30 H 1.09000 * 109.47210 * 240.00472 * 2 1 3 31 31 H 1.08998 * 109.46883 * 119.99650 * 2 1 3 32 32 H 0.96999 * 120.00356 * 180.02562 * 8 7 5 33 33 H 1.00910 * 110.99878 * 80.17189 * 13 3 2 34 34 H 1.09002 * 109.46688 * 54.40782 * 16 14 13 35 35 H 1.08993 * 109.47518 * 174.41222 * 16 14 13 36 36 H 1.08998 * 109.47536 * 59.99678 * 20 19 17 37 37 H 1.09001 * 109.47002 * 180.02562 * 20 19 17 38 38 H 1.09003 * 109.46981 * 300.00007 * 20 19 17 39 39 H 1.08000 * 119.99914 * 0.02562 * 22 21 14 40 40 H 1.08001 * 120.00019 * 180.22908 * 23 22 21 41 41 H 1.07997 * 119.99856 * 179.83320 * 24 23 22 42 42 H 1.08007 * 120.00176 * 179.97438 * 25 24 23 43 43 H 1.07998 * 120.00216 * 359.97438 * 26 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6113 1.9794 -0.8462 5 6 3.5427 1.4441 -0.1133 6 1 4.1444 1.8399 0.6915 7 6 4.1493 0.9402 -1.2441 8 7 5.4294 0.6388 -1.2250 9 14 3.1531 0.6854 -2.8037 10 1 3.1637 1.9341 -3.6073 11 1 3.7496 -0.4191 -3.5972 12 1 1.7542 0.3386 -2.4463 13 7 1.6424 2.1024 1.2507 14 6 1.5850 3.5605 1.0816 15 1 1.2730 3.7962 0.0640 16 6 0.5793 4.1498 2.0727 17 6 -0.8062 3.6664 1.7296 18 8 -0.9645 2.8741 0.8311 19 8 -1.8645 4.1159 2.4223 20 6 -3.1687 3.6069 2.0373 21 6 2.9479 4.1502 1.3384 22 6 3.7270 3.6654 2.3723 23 6 4.9788 4.2035 2.6054 24 6 5.4480 5.2321 1.8099 25 6 4.6667 5.7204 0.7794 26 6 3.4165 5.1796 0.5438 27 1 -0.3633 -1.0249 0.0755 28 1 -0.3634 0.5779 0.8497 29 1 -0.3634 0.4470 -0.9254 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.8562 0.2846 -2.0207 33 1 2.2627 1.8502 2.0057 34 1 0.8356 3.8310 3.0831 35 1 0.6087 5.2379 2.0165 36 1 -3.1836 2.5229 2.1505 37 1 -3.9341 4.0496 2.6747 38 1 -3.3676 3.8664 0.9975 39 1 3.3591 2.8638 2.9956 40 1 5.5890 3.8223 3.4108 41 1 6.4248 5.6543 1.9937 42 1 5.0331 6.5243 0.1581 43 1 2.8062 5.5610 -0.2614 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255150385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:21 Heat of formation + Delta-G solvation = -76.319336 kcal Electronic energy + Delta-G solvation = -24421.054874 eV Core-core repulsion = 21044.589459 eV Total energy + Delta-G solvation = -3376.465415 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.36386 -40.30234 -38.07329 -37.12995 -35.26343 -33.86871 -31.76851 -31.14457 -30.91322 -28.76107 -27.86982 -25.02776 -24.18608 -23.30402 -22.16881 -21.42081 -20.95335 -19.04717 -18.47138 -17.61615 -17.44631 -17.20942 -16.90552 -16.07865 -15.90858 -15.29211 -15.28752 -14.88457 -14.60379 -14.47325 -14.18594 -14.07695 -13.84782 -13.55882 -13.39026 -13.21146 -13.04311 -12.80350 -12.56588 -12.54119 -12.30184 -12.04225 -11.98650 -11.67124 -11.57613 -11.49118 -11.35529 -11.15636 -11.02402 -10.50793 -9.64308 -9.49487 -8.94874 -8.24605 -6.18871 0.61055 0.66460 1.29304 1.35547 1.45101 1.50451 1.97401 2.37706 3.03809 3.10568 3.51686 3.85430 4.03461 4.10301 4.25059 4.35973 4.40594 4.42486 4.44025 4.48629 4.50983 4.61740 4.69429 4.76162 4.79847 4.82918 4.90487 4.94100 5.08815 5.23211 5.24363 5.28505 5.45920 5.53114 5.57024 5.65491 5.69835 5.74281 5.78714 5.81753 6.26556 6.28195 6.47424 6.79239 6.94598 7.06787 7.46568 8.90546 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011017 B = 0.007917 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.933000 B = 3535.941725 C = 5415.630535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.108 4.108 3 C 0.205 3.795 4 H 0.011 0.989 5 C -0.529 4.529 6 H 0.059 0.941 7 C 0.030 3.970 8 N -0.936 5.936 9 Si 0.904 3.096 10 H -0.285 1.285 11 H -0.293 1.293 12 H -0.234 1.234 13 N -0.655 5.655 14 C 0.147 3.853 15 H 0.064 0.936 16 C -0.088 4.088 17 C 0.460 3.540 18 O -0.508 6.508 19 O -0.371 6.371 20 C 0.032 3.968 21 C -0.090 4.090 22 C -0.115 4.115 23 C -0.127 4.127 24 C -0.135 4.135 25 C -0.128 4.128 26 C -0.128 4.128 27 H 0.043 0.957 28 H 0.070 0.930 29 H 0.026 0.974 30 H 0.034 0.966 31 H 0.047 0.953 32 H 0.259 0.741 33 H 0.333 0.667 34 H 0.120 0.880 35 H 0.124 0.876 36 H 0.055 0.945 37 H 0.128 0.872 38 H 0.056 0.944 39 H 0.123 0.877 40 H 0.132 0.868 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.028 10.303 8.945 17.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.147 4.147 3 C 0.095 3.905 4 H 0.029 0.971 5 C -0.568 4.568 6 H 0.078 0.922 7 C -0.168 4.168 8 N -0.577 5.577 9 Si 0.730 3.270 10 H -0.212 1.212 11 H -0.220 1.220 12 H -0.158 1.158 13 N -0.283 5.283 14 C 0.036 3.964 15 H 0.082 0.918 16 C -0.125 4.125 17 C 0.303 3.697 18 O -0.394 6.394 19 O -0.289 6.289 20 C -0.061 4.061 21 C -0.092 4.092 22 C -0.133 4.133 23 C -0.145 4.145 24 C -0.153 4.153 25 C -0.146 4.146 26 C -0.147 4.147 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.153 0.847 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.074 0.926 37 H 0.146 0.854 38 H 0.074 0.926 39 H 0.141 0.859 40 H 0.150 0.850 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.692 9.861 8.459 17.478 hybrid contribution 1.113 -0.379 -1.467 1.880 sum -10.578 9.482 6.992 15.833 Atomic orbital electron populations 1.21558 0.95454 0.99731 1.01404 1.21739 0.95454 0.98034 0.99464 1.19226 0.91283 0.91394 0.88596 0.97137 1.22100 0.92306 1.38981 1.03415 0.92248 1.25520 0.95208 0.94748 1.01366 1.70118 1.12928 1.45151 1.29458 0.86565 0.81950 0.77297 0.81191 1.21163 1.21961 1.15752 1.60898 1.55157 1.04987 1.07296 1.20187 0.89641 0.88434 0.98138 0.91763 1.21404 0.86008 1.02978 1.02160 1.23897 0.87773 0.78571 0.79503 1.90709 1.86287 1.31952 1.30486 1.86487 1.17079 1.66159 1.59127 1.23395 0.80755 1.00009 1.01938 1.20436 0.97293 0.95904 0.95528 1.20957 0.95086 0.99283 0.97971 1.21306 0.95862 0.96879 1.00479 1.21345 1.00252 0.97619 0.96091 1.21320 0.94427 1.00757 0.98094 1.21166 0.97063 0.97132 0.99308 0.93755 0.91145 0.95451 0.94779 0.93456 0.93217 0.84739 0.86189 0.85786 0.92631 0.85368 0.92565 0.85928 0.85012 0.84606 0.84712 0.86026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.85 9.79 71.98 0.70 -4.14 16 2 C -0.11 -4.82 4.92 30.59 0.15 -4.67 16 3 C 0.20 9.44 1.53 44.17 0.07 9.51 16 4 H 0.01 0.53 6.19 -2.39 -0.01 0.52 16 5 C -0.53 -28.50 8.18 25.60 0.21 -28.29 16 6 H 0.06 3.42 6.12 -2.91 -0.02 3.40 16 7 C 0.03 1.72 5.32 84.65 0.45 2.17 16 8 N -0.94 -57.81 13.96 21.44 0.30 -57.51 16 9 Si 0.90 45.03 25.82 68.60 1.77 46.80 16 10 H -0.28 -14.17 7.11 99.48 0.71 -13.46 16 11 H -0.29 -14.61 7.11 99.48 0.71 -13.91 16 12 H -0.23 -11.05 5.47 99.48 0.54 -10.50 16 13 N -0.65 -24.93 4.50 -477.16 -2.15 -27.08 16 14 C 0.15 4.91 1.79 44.17 0.08 4.99 16 15 H 0.06 2.44 7.11 -2.38 -0.02 2.42 16 16 C -0.09 -2.20 5.46 29.85 0.16 -2.04 16 17 C 0.46 13.01 7.84 71.24 0.56 13.57 16 18 O -0.51 -17.85 13.60 21.94 0.30 -17.56 16 19 O -0.37 -8.87 10.56 -51.44 -0.54 -9.41 16 20 C 0.03 0.60 10.56 113.37 1.20 1.80 16 21 C -0.09 -3.04 3.79 -19.86 -0.08 -3.11 16 22 C -0.11 -3.78 7.65 22.27 0.17 -3.61 16 23 C -0.13 -3.98 10.05 22.27 0.22 -3.76 16 24 C -0.14 -4.05 10.05 22.27 0.22 -3.82 16 25 C -0.13 -3.91 10.05 22.27 0.22 -3.69 16 26 C -0.13 -4.22 9.67 22.27 0.22 -4.01 16 27 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.07 2.74 6.17 -2.39 -0.01 2.72 16 29 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.03 1.60 4.81 -2.39 -0.01 1.59 16 31 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 33 H 0.33 12.62 6.01 -89.69 -0.54 12.08 16 34 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.05 1.10 8.13 -2.39 -0.02 1.08 16 37 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.06 1.07 8.13 -2.39 -0.02 1.05 16 39 H 0.12 3.79 6.54 -2.91 -0.02 3.77 16 40 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 41 H 0.14 3.32 8.06 -2.91 -0.02 3.29 16 42 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 43 H 0.12 3.68 8.04 -2.91 -0.02 3.65 16 Total: -1.00 -68.15 343.33 4.54 -63.61 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: 0.31 Total: 30.25 kcal Atomic # 6 Polarization: -33.67 SS G_CDS: 4.56 Total: -29.11 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -1.85 Total: -84.59 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.25 Total: -26.97 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.77 Total: 46.80 kcal Total: -68.15 4.54 -63.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255150385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.706 kcal (2) G-P(sol) polarization free energy of solvation -68.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds