Wall clock time and date at job start Tue Mar 31 2020 06:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46560 * 2 1 4 4 H 1.08993 * 109.47245 * 302.73528 * 3 2 1 5 5 C 1.50701 * 109.46791 * 182.73115 * 3 2 1 6 6 H 1.08001 * 120.00306 * 245.77206 * 5 3 2 7 7 C 1.37882 * 120.00009 * 65.77551 * 5 3 2 8 8 N 1.31514 * 119.99943 * 193.22433 * 7 5 3 9 9 Si 1.86802 * 119.99768 * 13.22182 * 7 5 3 10 10 H 1.48496 * 109.46968 * 85.80282 * 9 7 5 11 11 H 1.48499 * 109.46991 * 205.80526 * 9 7 5 12 12 H 1.48500 * 109.47024 * 325.80199 * 9 7 5 13 13 N 1.46902 * 109.46931 * 62.73840 * 3 2 1 14 14 C 1.46896 * 110.99656 * 208.72179 * 13 3 2 15 15 H 1.08996 * 109.47426 * 328.47130 * 14 13 3 16 16 C 1.53003 * 109.47410 * 88.47121 * 14 13 3 17 17 C 1.50706 * 109.47248 * 208.47213 * 14 13 3 18 18 O 1.20833 * 119.99493 * 359.97438 * 17 14 13 19 19 O 1.34226 * 120.00501 * 179.97438 * 17 14 13 20 20 C 1.45197 * 116.99965 * 179.97438 * 19 17 14 21 21 C 1.50700 * 109.46714 * 180.02562 * 20 19 17 22 22 C 1.38242 * 120.00009 * 269.72683 * 21 20 19 23 23 C 1.38232 * 119.99753 * 179.76808 * 22 21 20 24 24 C 1.38240 * 120.00253 * 0.48530 * 23 22 21 25 25 C 1.38236 * 119.99963 * 359.79217 * 24 23 22 26 26 C 1.38234 * 120.00043 * 90.00581 * 21 20 19 27 27 H 1.08999 * 109.47625 * 54.98015 * 1 2 3 28 28 H 1.09004 * 109.46526 * 174.97920 * 1 2 3 29 29 H 1.08997 * 109.47191 * 294.97710 * 1 2 3 30 30 H 1.09002 * 109.47215 * 120.00130 * 2 1 3 31 31 H 1.08998 * 109.47288 * 240.00838 * 2 1 3 32 32 H 0.96996 * 119.99706 * 180.02562 * 8 7 5 33 33 H 1.00896 * 111.00072 * 84.76687 * 13 3 2 34 34 H 1.09000 * 109.47163 * 184.95776 * 16 14 13 35 35 H 1.08994 * 109.47101 * 304.96306 * 16 14 13 36 36 H 1.09002 * 109.47120 * 64.96393 * 16 14 13 37 37 H 1.08991 * 109.47494 * 299.99985 * 20 19 17 38 38 H 1.08998 * 109.46901 * 60.00753 * 20 19 17 39 39 H 1.07992 * 120.00184 * 0.02562 * 22 21 20 40 40 H 1.08003 * 120.00146 * 180.25278 * 23 22 21 41 41 H 1.07996 * 119.99898 * 179.76623 * 24 23 22 42 42 H 1.07996 * 119.99833 * 179.97438 * 25 24 23 43 43 H 1.07996 * 120.00179 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6371 1.9703 -0.8644 5 6 3.5454 1.4432 -0.0677 6 1 4.1234 1.8136 0.7661 7 6 4.1850 0.9709 -1.1942 8 7 5.4768 0.7261 -1.1629 9 14 3.2167 0.6786 -2.7646 10 1 3.1328 1.9440 -3.5371 11 1 3.8998 -0.3561 -3.5820 12 1 1.8478 0.2153 -2.4231 13 7 1.6049 2.1157 1.2312 14 6 1.4477 3.5600 1.0141 15 1 2.1639 3.8947 0.2638 16 6 0.0264 3.8510 0.5281 17 6 1.6961 4.2924 2.3076 18 8 1.9750 3.6744 3.3078 19 8 1.6075 5.6311 2.3486 20 6 1.8590 6.2694 3.6283 21 6 1.7148 7.7623 3.4818 22 6 2.8127 8.5334 3.1488 23 6 2.6794 9.9023 3.0098 24 6 1.4502 10.5013 3.2135 25 6 0.3535 9.7309 3.5520 26 6 0.4858 8.3613 3.6860 27 1 -0.3634 0.5897 -0.8416 28 1 -0.3632 -1.0238 -0.0899 29 1 -0.3633 0.4339 0.9315 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 5.9268 0.3942 -1.9555 33 1 2.2447 1.9315 1.9893 34 1 -0.0643 4.9092 0.2830 35 1 -0.1838 3.2533 -0.3589 36 1 -0.6853 3.5978 1.3139 37 1 1.1408 5.9058 4.3631 38 1 2.8699 6.0325 3.9600 39 1 3.7737 8.0660 2.9933 40 1 3.5362 10.5043 2.7457 41 1 1.3469 11.5711 3.1085 42 1 -0.6066 10.1989 3.7115 43 1 -0.3711 7.7594 3.9501 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255153551.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:25 Heat of formation + Delta-G solvation = -64.237504 kcal Electronic energy + Delta-G solvation = -22992.860751 eV Core-core repulsion = 19616.919243 eV Total energy + Delta-G solvation = -3375.941508 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.41562 -39.29192 -36.99429 -35.93418 -33.25012 -32.28083 -31.83725 -31.14037 -29.27020 -26.80708 -26.48540 -23.92457 -22.82138 -22.44020 -21.48227 -20.24764 -19.60181 -17.43131 -17.34115 -16.94963 -16.39968 -16.09355 -15.23921 -15.13832 -14.95059 -14.38907 -13.75676 -13.65477 -13.54632 -13.19535 -12.89592 -12.77609 -12.68226 -12.43857 -12.06139 -11.93580 -11.60613 -11.53828 -11.34705 -11.31132 -11.22465 -10.88694 -10.74831 -10.55940 -10.37281 -10.00913 -9.76423 -9.53292 -9.19809 -9.15219 -9.05818 -8.51829 -7.51497 -6.17161 -4.16004 0.96790 1.17216 2.52449 2.85929 3.24584 3.34208 3.36182 3.66248 4.36035 4.47663 4.58538 4.75883 4.88282 4.99487 5.03201 5.06210 5.15716 5.26738 5.36697 5.41450 5.54009 5.71185 5.74054 5.80369 6.04427 6.11025 6.15360 6.18909 6.21776 6.25974 6.34981 6.35156 6.46265 6.59821 6.65483 6.73582 6.81509 7.02700 7.14414 7.35118 7.54381 7.85219 8.05294 8.31262 8.44678 8.88139 9.47648 10.95755 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021157 B = 0.003457 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.092630 B = 8097.232547 C = 8607.057295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C 0.188 3.812 4 H 0.030 0.970 5 C -0.556 4.556 6 H 0.071 0.929 7 C 0.079 3.921 8 N -0.890 5.890 9 Si 0.862 3.138 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.245 1.245 13 N -0.665 5.665 14 C 0.098 3.902 15 H 0.089 0.911 16 C -0.130 4.130 17 C 0.465 3.535 18 O -0.502 6.502 19 O -0.352 6.352 20 C 0.106 3.894 21 C -0.092 4.092 22 C -0.095 4.095 23 C -0.124 4.124 24 C -0.113 4.113 25 C -0.125 4.125 26 C -0.096 4.096 27 H 0.038 0.962 28 H 0.031 0.969 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.264 0.736 33 H 0.351 0.649 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.470 16.194 6.925 20.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.151 4.151 3 C 0.079 3.921 4 H 0.048 0.952 5 C -0.594 4.594 6 H 0.089 0.911 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.689 3.311 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.169 1.169 13 N -0.301 5.301 14 C -0.014 4.014 15 H 0.107 0.893 16 C -0.188 4.188 17 C 0.307 3.693 18 O -0.389 6.389 19 O -0.269 6.269 20 C 0.032 3.968 21 C -0.092 4.092 22 C -0.113 4.113 23 C -0.142 4.142 24 C -0.131 4.131 25 C -0.143 4.143 26 C -0.114 4.114 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.172 0.828 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.876 15.823 7.070 20.460 hybrid contribution 0.838 0.089 -0.828 1.181 sum -10.037 15.912 6.242 19.822 Atomic orbital electron populations 1.21725 0.97868 0.99006 1.01251 1.21868 0.93469 0.98653 1.01117 1.19576 0.93992 0.90987 0.87535 0.95230 1.21704 0.90199 1.43971 1.03565 0.91080 1.24962 0.94693 0.93888 0.98905 1.69980 1.09648 1.43645 1.29407 0.87266 0.81955 0.78322 0.83585 1.20460 1.21419 1.16898 1.60972 1.55375 1.03663 1.10060 1.21180 0.99534 0.90262 0.90390 0.89316 1.21723 0.94125 1.01047 1.01947 1.24252 0.72591 0.80387 0.92066 1.90628 1.43766 1.67888 1.36584 1.86594 1.81820 1.22381 1.36066 1.21756 1.02586 0.88305 0.84163 1.19569 0.94247 0.93577 1.01831 1.21160 0.98650 0.93963 0.97505 1.21174 0.97813 0.94720 1.00446 1.21225 0.93014 0.99947 0.98961 1.21150 0.98911 0.93778 1.00456 1.21107 0.96617 0.95007 0.98664 0.94325 0.95013 0.92252 0.92703 0.92476 0.92603 0.82772 0.92109 0.91082 0.92285 0.90413 0.90329 0.85611 0.85741 0.85965 0.85815 0.85760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.71 37.16 0.36 -2.19 16 2 C -0.11 -2.43 4.99 -26.73 -0.13 -2.56 16 3 C 0.19 4.27 1.36 -68.86 -0.09 4.18 16 4 H 0.03 0.68 6.09 -51.93 -0.32 0.36 16 5 C -0.56 -15.14 8.92 -34.44 -0.31 -15.45 16 6 H 0.07 2.14 7.89 -52.49 -0.41 1.73 16 7 C 0.08 2.22 5.37 -17.82 -0.10 2.13 16 8 N -0.89 -26.75 13.96 55.43 0.77 -25.97 16 9 Si 0.86 20.53 25.87 -169.99 -4.40 16.14 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.24 -5.43 5.31 56.52 0.30 -5.13 16 13 N -0.67 -13.67 5.43 -102.17 -0.55 -14.22 16 14 C 0.10 1.78 2.92 -68.86 -0.20 1.58 16 15 H 0.09 1.73 7.72 -51.93 -0.40 1.33 16 16 C -0.13 -1.95 9.38 37.16 0.35 -1.61 16 17 C 0.46 8.25 7.28 36.01 0.26 8.52 16 18 O -0.50 -10.00 15.33 -18.76 -0.29 -10.29 16 19 O -0.35 -5.46 10.13 -39.25 -0.40 -5.86 16 20 C 0.11 1.37 5.59 36.01 0.20 1.57 16 21 C -0.09 -1.06 5.52 -104.62 -0.58 -1.63 16 22 C -0.09 -1.01 9.70 -39.58 -0.38 -1.40 16 23 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 24 C -0.11 -0.96 10.05 -39.58 -0.40 -1.36 16 25 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 26 C -0.10 -0.97 9.70 -39.58 -0.38 -1.35 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 1.05 7.83 -51.93 -0.41 0.64 16 30 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 1.28 4.70 -51.93 -0.24 1.04 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.35 7.83 6.90 -39.29 -0.27 7.56 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.07 1.07 7.72 -51.93 -0.40 0.67 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 38 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 39 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 41 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 355.15 15.07 5.35 5.35 Total: -1.00 -30.71 355.15 -8.47 -39.18 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -6.76 Total: 8.29 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -2.20 Total: -12.61 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.22 Total: -40.19 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.69 Total: -16.15 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.40 Total: 16.14 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.71 -8.47 -39.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255153551.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.060 kcal (2) G-P(sol) polarization free energy of solvation -30.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds