Wall clock time and date at job start Tue Mar 31 2020 06:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46560 * 2 1 4 4 H 1.08993 * 109.47245 * 302.73528 * 3 2 1 5 5 C 1.50701 * 109.46791 * 182.73115 * 3 2 1 6 6 H 1.08001 * 120.00306 * 245.77206 * 5 3 2 7 7 C 1.37882 * 120.00009 * 65.77551 * 5 3 2 8 8 N 1.31514 * 119.99943 * 193.22433 * 7 5 3 9 9 Si 1.86802 * 119.99768 * 13.22182 * 7 5 3 10 10 H 1.48496 * 109.46968 * 85.80282 * 9 7 5 11 11 H 1.48499 * 109.46991 * 205.80526 * 9 7 5 12 12 H 1.48500 * 109.47024 * 325.80199 * 9 7 5 13 13 N 1.46902 * 109.46931 * 62.73840 * 3 2 1 14 14 C 1.46896 * 110.99656 * 208.72179 * 13 3 2 15 15 H 1.08996 * 109.47426 * 328.47130 * 14 13 3 16 16 C 1.53003 * 109.47410 * 88.47121 * 14 13 3 17 17 C 1.50706 * 109.47248 * 208.47213 * 14 13 3 18 18 O 1.20833 * 119.99493 * 359.97438 * 17 14 13 19 19 O 1.34226 * 120.00501 * 179.97438 * 17 14 13 20 20 C 1.45197 * 116.99965 * 179.97438 * 19 17 14 21 21 C 1.50700 * 109.46714 * 180.02562 * 20 19 17 22 22 C 1.38242 * 120.00009 * 269.72683 * 21 20 19 23 23 C 1.38232 * 119.99753 * 179.76808 * 22 21 20 24 24 C 1.38240 * 120.00253 * 0.48530 * 23 22 21 25 25 C 1.38236 * 119.99963 * 359.79217 * 24 23 22 26 26 C 1.38234 * 120.00043 * 90.00581 * 21 20 19 27 27 H 1.08999 * 109.47625 * 54.98015 * 1 2 3 28 28 H 1.09004 * 109.46526 * 174.97920 * 1 2 3 29 29 H 1.08997 * 109.47191 * 294.97710 * 1 2 3 30 30 H 1.09002 * 109.47215 * 120.00130 * 2 1 3 31 31 H 1.08998 * 109.47288 * 240.00838 * 2 1 3 32 32 H 0.96996 * 119.99706 * 180.02562 * 8 7 5 33 33 H 1.00896 * 111.00072 * 84.76687 * 13 3 2 34 34 H 1.09000 * 109.47163 * 184.95776 * 16 14 13 35 35 H 1.08994 * 109.47101 * 304.96306 * 16 14 13 36 36 H 1.09002 * 109.47120 * 64.96393 * 16 14 13 37 37 H 1.08991 * 109.47494 * 299.99985 * 20 19 17 38 38 H 1.08998 * 109.46901 * 60.00753 * 20 19 17 39 39 H 1.07992 * 120.00184 * 0.02562 * 22 21 20 40 40 H 1.08003 * 120.00146 * 180.25278 * 23 22 21 41 41 H 1.07996 * 119.99898 * 179.76623 * 24 23 22 42 42 H 1.07996 * 119.99833 * 179.97438 * 25 24 23 43 43 H 1.07996 * 120.00179 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6371 1.9703 -0.8644 5 6 3.5454 1.4432 -0.0677 6 1 4.1234 1.8136 0.7661 7 6 4.1850 0.9709 -1.1942 8 7 5.4768 0.7261 -1.1629 9 14 3.2167 0.6786 -2.7646 10 1 3.1328 1.9440 -3.5371 11 1 3.8998 -0.3561 -3.5820 12 1 1.8478 0.2153 -2.4231 13 7 1.6049 2.1157 1.2312 14 6 1.4477 3.5600 1.0141 15 1 2.1639 3.8947 0.2638 16 6 0.0264 3.8510 0.5281 17 6 1.6961 4.2924 2.3076 18 8 1.9750 3.6744 3.3078 19 8 1.6075 5.6311 2.3486 20 6 1.8590 6.2694 3.6283 21 6 1.7148 7.7623 3.4818 22 6 2.8127 8.5334 3.1488 23 6 2.6794 9.9023 3.0098 24 6 1.4502 10.5013 3.2135 25 6 0.3535 9.7309 3.5520 26 6 0.4858 8.3613 3.6860 27 1 -0.3634 0.5897 -0.8416 28 1 -0.3632 -1.0238 -0.0899 29 1 -0.3633 0.4339 0.9315 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 5.9268 0.3942 -1.9555 33 1 2.2447 1.9315 1.9893 34 1 -0.0643 4.9092 0.2830 35 1 -0.1838 3.2533 -0.3589 36 1 -0.6853 3.5978 1.3139 37 1 1.1408 5.9058 4.3631 38 1 2.8699 6.0325 3.9600 39 1 3.7737 8.0660 2.9933 40 1 3.5362 10.5043 2.7457 41 1 1.3469 11.5711 3.1085 42 1 -0.6066 10.1989 3.7115 43 1 -0.3711 7.7594 3.9501 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255153551.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:24 Heat of formation + Delta-G solvation = -82.179505 kcal Electronic energy + Delta-G solvation = -22993.638775 eV Core-core repulsion = 19616.919243 eV Total energy + Delta-G solvation = -3376.719531 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.75829 -40.11900 -38.52733 -37.41315 -34.95557 -33.83044 -33.10287 -31.85319 -30.78431 -28.34559 -27.76970 -25.34205 -24.14176 -23.54203 -22.32169 -21.74980 -21.24842 -19.29449 -18.65730 -18.14342 -17.62246 -17.30775 -16.85798 -16.25829 -16.07337 -15.79666 -15.15094 -14.96733 -14.73251 -14.35836 -14.17471 -14.12201 -13.93702 -13.67099 -13.53145 -13.36309 -13.15927 -12.97149 -12.87409 -12.52636 -12.40751 -12.12774 -12.09485 -12.08811 -11.72340 -11.57795 -11.41224 -11.37043 -11.04245 -10.61387 -9.87666 -9.84596 -9.25997 -8.34173 -6.38213 0.17063 0.44915 1.09183 1.36958 1.39248 1.49614 1.65938 2.34507 2.86170 3.01262 3.40930 3.52187 3.75852 3.81861 4.09291 4.16245 4.19105 4.23830 4.27650 4.33899 4.48096 4.58143 4.58487 4.68274 4.73557 4.87668 4.92537 4.96718 4.98090 5.10400 5.19943 5.26694 5.31175 5.39803 5.50083 5.50521 5.52485 5.56180 5.57629 5.73342 5.99335 6.03504 6.33052 6.45662 6.66380 6.73325 7.29745 8.82522 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021157 B = 0.003457 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.092630 B = 8097.232547 C = 8607.057295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.114 4.114 3 C 0.195 3.805 4 H 0.040 0.960 5 C -0.559 4.559 6 H 0.022 0.978 7 C 0.020 3.980 8 N -0.943 5.943 9 Si 0.928 3.072 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.213 1.213 13 N -0.658 5.658 14 C 0.091 3.909 15 H 0.073 0.927 16 C -0.121 4.121 17 C 0.469 3.531 18 O -0.530 6.530 19 O -0.349 6.349 20 C 0.104 3.896 21 C -0.113 4.113 22 C -0.114 4.114 23 C -0.130 4.130 24 C -0.111 4.111 25 C -0.126 4.126 26 C -0.105 4.105 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.040 0.960 31 H 0.049 0.951 32 H 0.266 0.734 33 H 0.337 0.663 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.122 0.878 40 H 0.144 0.856 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.587 17.777 5.919 23.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.153 4.153 3 C 0.086 3.914 4 H 0.058 0.942 5 C -0.598 4.598 6 H 0.040 0.960 7 C -0.179 4.179 8 N -0.582 5.582 9 Si 0.751 3.249 10 H -0.196 1.196 11 H -0.217 1.217 12 H -0.135 1.135 13 N -0.291 5.291 14 C -0.020 4.020 15 H 0.091 0.909 16 C -0.179 4.179 17 C 0.313 3.687 18 O -0.419 6.419 19 O -0.265 6.265 20 C 0.031 3.969 21 C -0.113 4.113 22 C -0.132 4.132 23 C -0.147 4.147 24 C -0.129 4.129 25 C -0.144 4.144 26 C -0.123 4.123 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.156 0.844 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.140 0.860 40 H 0.162 0.838 41 H 0.169 0.831 42 H 0.169 0.831 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.027 17.437 6.072 23.188 hybrid contribution 1.895 -0.259 -0.382 1.950 sum -12.132 17.178 5.690 21.786 Atomic orbital electron populations 1.21625 0.94549 1.00735 1.01980 1.21810 0.96371 0.97029 1.00078 1.19483 0.90734 0.92454 0.88766 0.94193 1.22000 0.92746 1.43038 1.02001 0.95974 1.25904 0.95610 0.93636 1.02703 1.70136 1.11917 1.45602 1.30560 0.86206 0.81809 0.78436 0.78445 1.19625 1.21656 1.13534 1.61028 1.54099 1.05346 1.08593 1.21335 1.01461 0.88893 0.90331 0.90912 1.21692 0.91495 1.02532 1.02155 1.24148 0.71950 0.81109 0.91525 1.90615 1.45138 1.68633 1.37497 1.86573 1.81225 1.20994 1.37703 1.21947 1.02402 0.89514 0.83082 1.19538 0.95430 0.92370 1.03933 1.21301 0.98482 0.95039 0.98360 1.21463 0.99137 0.94133 1.00000 1.21629 0.92405 1.01469 0.97408 1.21510 1.00274 0.93184 0.99393 1.21320 0.96285 0.96053 0.98609 0.93077 0.92904 0.91959 0.94155 0.93261 0.92549 0.84393 0.90001 0.90630 0.91445 0.89676 0.91091 0.86019 0.83845 0.83120 0.83150 0.84727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.32 9.71 71.98 0.70 -3.62 16 2 C -0.11 -4.77 4.99 30.60 0.15 -4.62 16 3 C 0.20 8.79 1.36 44.17 0.06 8.85 16 4 H 0.04 1.74 6.09 -2.39 -0.01 1.73 16 5 C -0.56 -31.51 8.92 25.60 0.23 -31.29 16 6 H 0.02 1.42 7.89 -2.91 -0.02 1.40 16 7 C 0.02 1.16 5.37 84.66 0.45 1.62 16 8 N -0.94 -58.79 13.96 21.45 0.30 -58.49 16 9 Si 0.93 42.00 25.87 68.60 1.77 43.77 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.21 -8.49 5.31 99.48 0.53 -7.96 16 13 N -0.66 -27.12 5.43 -477.15 -2.59 -29.71 16 14 C 0.09 3.29 2.92 44.17 0.13 3.42 16 15 H 0.07 2.88 7.72 -2.39 -0.02 2.86 16 16 C -0.12 -3.34 9.38 71.98 0.67 -2.67 16 17 C 0.47 16.91 7.28 71.24 0.52 17.43 16 18 O -0.53 -21.76 15.33 21.94 0.34 -21.43 16 19 O -0.35 -10.88 10.13 -51.38 -0.52 -11.40 16 20 C 0.10 2.73 5.59 71.24 0.40 3.13 16 21 C -0.11 -2.55 5.52 -19.86 -0.11 -2.66 16 22 C -0.11 -2.42 9.70 22.27 0.22 -2.20 16 23 C -0.13 -2.17 10.05 22.27 0.22 -1.94 16 24 C -0.11 -1.57 10.05 22.27 0.22 -1.34 16 25 C -0.13 -1.85 10.05 22.27 0.22 -1.63 16 26 C -0.10 -1.95 9.70 22.27 0.22 -1.73 16 27 H 0.05 1.55 8.14 -2.39 -0.02 1.54 16 28 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 29 H 0.06 2.01 7.83 -2.39 -0.02 1.99 16 30 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.05 2.11 4.70 -2.39 -0.01 2.10 16 32 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 33 H 0.34 15.63 6.90 -89.70 -0.62 15.01 16 34 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.07 2.04 7.72 -2.39 -0.02 2.02 16 36 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.08 2.08 8.08 -2.39 -0.02 2.06 16 38 H 0.07 1.94 8.08 -2.39 -0.02 1.92 16 39 H 0.12 2.54 8.06 -2.91 -0.02 2.52 16 40 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 41 H 0.15 1.24 8.06 -2.91 -0.02 1.21 16 42 H 0.15 1.37 8.06 -2.91 -0.02 1.34 16 43 H 0.13 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -68.81 355.15 3.80 -65.01 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: 0.20 Total: 31.51 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: 4.31 Total: -19.25 kcal Atomic # 7 Polarization: -85.91 SS G_CDS: -2.29 Total: -88.21 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -0.18 Total: -32.82 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.77 Total: 43.77 kcal Total: -68.81 3.80 -65.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255153551.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.174 kcal (2) G-P(sol) polarization free energy of solvation -68.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds