Wall clock time and date at job start Tue Mar 31 2020 06:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46871 * 2 1 4 4 H 1.09000 * 109.47163 * 179.07409 * 3 2 1 5 5 C 1.50701 * 109.47520 * 299.07255 * 3 2 1 6 6 H 1.08005 * 119.99990 * 119.99654 * 5 3 2 7 7 C 1.37873 * 120.00247 * 300.00449 * 5 3 2 8 8 N 1.31515 * 120.00158 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99899 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.47127 * 89.99764 * 9 7 5 11 11 H 1.48500 * 109.47261 * 209.99917 * 9 7 5 12 12 H 1.48500 * 109.47083 * 329.99829 * 9 7 5 13 13 N 1.46903 * 109.47330 * 59.07435 * 3 2 1 14 14 C 1.46905 * 110.99504 * 85.73645 * 13 3 2 15 15 H 1.08995 * 109.47412 * 326.97127 * 14 13 3 16 16 C 1.52994 * 109.47266 * 86.97408 * 14 13 3 17 17 C 1.50702 * 109.46511 * 206.96873 * 14 13 3 18 18 O 1.20822 * 120.00305 * 0.02562 * 17 14 13 19 19 O 1.34235 * 119.99772 * 179.97438 * 17 14 13 20 20 C 1.45197 * 116.99929 * 179.97438 * 19 17 14 21 21 C 1.50706 * 109.47155 * 180.02562 * 20 19 17 22 22 C 1.38235 * 119.99691 * 269.73406 * 21 20 19 23 23 C 1.38240 * 119.99462 * 179.76480 * 22 21 20 24 24 C 1.38232 * 119.99885 * 0.50378 * 23 22 21 25 25 C 1.38236 * 120.00086 * 359.74579 * 24 23 22 26 26 C 1.38230 * 120.00133 * 0.02562 * 25 24 23 27 27 H 1.09005 * 109.47162 * 176.21183 * 1 2 3 28 28 H 1.09003 * 109.47254 * 296.21081 * 1 2 3 29 29 H 1.09005 * 109.47362 * 56.21295 * 1 2 3 30 30 H 1.08993 * 109.47044 * 240.00180 * 2 1 3 31 31 H 1.08992 * 109.47174 * 120.00054 * 2 1 3 32 32 H 0.97006 * 119.99739 * 180.02562 * 8 7 5 33 33 H 1.00903 * 110.99842 * 209.68854 * 13 3 2 34 34 H 1.09005 * 109.47016 * 299.99432 * 16 14 13 35 35 H 1.09003 * 109.47452 * 59.99487 * 16 14 13 36 36 H 1.08997 * 109.47171 * 179.97438 * 16 14 13 37 37 H 1.08997 * 109.47698 * 300.00610 * 20 19 17 38 38 H 1.09005 * 109.46939 * 60.00668 * 20 19 17 39 39 H 1.07995 * 120.00163 * 359.97438 * 22 21 20 40 40 H 1.07996 * 119.99750 * 180.22265 * 23 22 21 41 41 H 1.08007 * 120.00167 * 179.72398 * 24 23 22 42 42 H 1.07999 * 119.99746 * 179.97438 * 25 24 23 43 43 H 1.08002 * 119.99842 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1298 1.4426 0.0166 5 6 1.5565 2.1463 -1.2418 6 1 0.9341 3.0249 -1.1569 7 6 1.9085 1.6686 -2.4863 8 7 1.4862 2.2825 -3.5699 9 14 2.9854 0.1493 -2.6332 10 1 2.1280 -1.0621 -2.6848 11 1 3.7961 0.2353 -3.8744 12 1 3.8882 0.0669 -1.4570 13 7 1.5321 2.1414 1.1881 14 6 2.4078 1.9160 2.3459 15 1 2.8411 0.9178 2.2848 16 6 3.5274 2.9586 2.3491 17 6 1.6041 2.0381 3.6148 18 8 0.4230 2.2868 3.5603 19 8 2.2002 1.8695 4.8056 20 6 1.3646 2.0021 5.9857 21 6 2.2004 1.7821 7.2203 22 6 2.3336 0.5111 7.7473 23 6 3.1042 0.3087 8.8770 24 6 3.7331 1.3787 9.4856 25 6 3.5956 2.6505 8.9614 26 6 2.8289 2.8522 7.8291 27 1 -0.3634 -1.0255 -0.0679 28 1 -0.3634 0.4539 0.9220 29 1 -0.3634 0.5715 -0.8541 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8899 32 1 1.7336 1.9461 -4.4455 33 1 1.4191 3.1276 1.0067 34 1 4.1088 2.8704 1.4313 35 1 3.0942 3.9570 2.4102 36 1 4.1769 2.7917 3.2084 37 1 0.9316 3.0019 6.0139 38 1 0.5659 1.2611 5.9505 39 1 1.8384 -0.3241 7.2746 40 1 3.2113 -0.6848 9.2867 41 1 4.3316 1.2213 10.3708 42 1 4.0866 3.4865 9.4372 43 1 2.7212 3.8459 7.4199 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255153562.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:27 Heat of formation + Delta-G solvation = -57.303409 kcal Electronic energy + Delta-G solvation = -22996.739044 eV Core-core repulsion = 19621.098221 eV Total energy + Delta-G solvation = -3375.640823 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.37128 -39.32228 -37.14342 -35.98208 -33.50293 -32.33438 -31.62349 -31.19936 -28.96986 -26.82129 -26.33689 -24.01220 -23.14447 -22.87897 -21.58107 -20.54451 -19.27586 -17.47977 -17.32986 -16.65969 -16.35873 -15.94844 -15.49735 -15.06966 -15.01486 -14.17316 -13.77663 -13.70106 -13.64043 -13.26796 -13.09222 -13.00844 -12.73742 -12.53488 -12.43085 -12.06932 -11.91833 -11.40406 -11.36703 -11.21117 -11.04988 -10.67037 -10.57625 -10.55110 -10.29503 -10.09297 -9.90459 -9.35014 -9.21152 -9.12345 -9.00937 -8.61138 -7.60080 -6.12531 -4.12062 0.91494 1.11295 2.57088 2.81308 3.25335 3.33417 3.35955 3.60506 4.35513 4.43046 4.53064 4.70319 4.82581 4.94243 4.98966 5.02702 5.19851 5.21454 5.28118 5.33596 5.36390 5.42856 5.66318 5.74398 5.88376 5.97366 6.08861 6.13427 6.20242 6.20444 6.29176 6.29489 6.45285 6.58582 6.67580 6.68902 6.88630 7.10613 7.18543 7.49229 7.55559 7.77711 8.11353 8.24853 8.54162 8.92145 9.48820 11.00141 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030649 B = 0.003086 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.362479 B = 9071.217805 C = 9100.761366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.115 4.115 3 C 0.189 3.811 4 H 0.006 0.994 5 C -0.514 4.514 6 H 0.080 0.920 7 C 0.075 3.925 8 N -0.896 5.896 9 Si 0.885 3.115 10 H -0.276 1.276 11 H -0.297 1.297 12 H -0.268 1.268 13 N -0.656 5.656 14 C 0.095 3.905 15 H 0.107 0.893 16 C -0.175 4.175 17 C 0.462 3.538 18 O -0.485 6.485 19 O -0.359 6.359 20 C 0.107 3.893 21 C -0.092 4.092 22 C -0.096 4.096 23 C -0.124 4.124 24 C -0.114 4.114 25 C -0.124 4.124 26 C -0.096 4.096 27 H 0.020 0.980 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.029 0.971 32 H 0.265 0.735 33 H 0.350 0.650 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.393 -1.853 23.728 24.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.153 4.153 3 C 0.081 3.919 4 H 0.024 0.976 5 C -0.552 4.552 6 H 0.098 0.902 7 C -0.128 4.128 8 N -0.533 5.533 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.225 1.225 12 H -0.193 1.193 13 N -0.289 5.289 14 C -0.017 4.017 15 H 0.125 0.875 16 C -0.234 4.234 17 C 0.303 3.697 18 O -0.369 6.369 19 O -0.276 6.276 20 C 0.033 3.967 21 C -0.092 4.092 22 C -0.114 4.114 23 C -0.142 4.142 24 C -0.132 4.132 25 C -0.142 4.142 26 C -0.114 4.114 27 H 0.039 0.961 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.170 0.830 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.554 -2.264 23.691 24.231 hybrid contribution 1.163 -0.363 -0.366 1.272 sum 5.717 -2.627 23.325 24.159 Atomic orbital electron populations 1.21482 0.95336 0.98345 1.03240 1.21797 0.97699 0.98005 0.97819 1.19630 0.93023 0.91261 0.88014 0.97649 1.20959 1.32668 1.13424 0.88187 0.90159 1.24872 0.95492 0.96721 0.95670 1.69884 1.45225 1.40397 0.97836 0.86882 0.80813 0.83836 0.76880 1.20334 1.22511 1.19330 1.60115 1.47708 1.17500 1.03532 1.21105 0.91105 1.01707 0.87789 0.87476 1.22423 0.98675 0.98857 1.03432 1.24190 0.87722 0.73094 0.84678 1.90639 1.16733 1.42486 1.87065 1.86591 1.43499 1.82919 1.14634 1.21715 0.91586 1.02837 0.80575 1.19586 0.99850 0.94032 0.95715 1.21133 0.98039 0.96326 0.95905 1.21165 0.97716 0.99166 0.96146 1.21226 0.99207 0.92928 0.99816 1.21160 0.99209 0.97346 0.96505 1.21118 0.96000 0.98792 0.95501 0.96107 0.92415 0.91302 0.93844 0.95215 0.92530 0.83022 0.90635 0.92061 0.91574 0.90497 0.90450 0.85712 0.85788 0.85959 0.85794 0.85739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 9.52 37.16 0.35 -2.40 16 2 C -0.12 -2.54 5.27 -26.73 -0.14 -2.68 16 3 C 0.19 4.28 1.70 -68.86 -0.12 4.17 16 4 H 0.01 0.14 6.32 -51.93 -0.33 -0.19 16 5 C -0.51 -13.79 7.89 -34.44 -0.27 -14.06 16 6 H 0.08 2.35 7.85 -52.48 -0.41 1.94 16 7 C 0.08 2.09 5.45 -17.82 -0.10 2.00 16 8 N -0.90 -26.69 13.96 55.43 0.77 -25.92 16 9 Si 0.89 21.51 24.38 -169.99 -4.14 17.36 16 10 H -0.28 -6.64 6.86 56.52 0.39 -6.25 16 11 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.27 -6.19 6.53 56.52 0.37 -5.82 16 13 N -0.66 -13.22 4.82 -102.17 -0.49 -13.72 16 14 C 0.10 1.59 2.90 -68.86 -0.20 1.39 16 15 H 0.11 1.75 7.17 -51.93 -0.37 1.37 16 16 C -0.17 -2.49 9.08 37.15 0.34 -2.16 16 17 C 0.46 7.70 7.32 36.01 0.26 7.96 16 18 O -0.48 -9.41 16.18 -18.75 -0.30 -9.72 16 19 O -0.36 -5.15 10.11 -39.27 -0.40 -5.55 16 20 C 0.11 1.28 5.59 36.01 0.20 1.49 16 21 C -0.09 -0.98 5.52 -104.62 -0.58 -1.55 16 22 C -0.10 -0.93 9.70 -39.58 -0.38 -1.31 16 23 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 24 C -0.11 -0.89 10.05 -39.58 -0.40 -1.28 16 25 C -0.12 -1.02 10.05 -39.59 -0.40 -1.41 16 26 C -0.10 -0.91 9.70 -39.59 -0.38 -1.30 16 27 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 1.25 7.70 -51.93 -0.40 0.85 16 29 H 0.07 1.66 7.12 -51.93 -0.37 1.29 16 30 H 0.04 1.00 3.25 -51.93 -0.17 0.83 16 31 H 0.03 0.58 7.52 -51.93 -0.39 0.19 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.35 7.15 7.91 -39.29 -0.31 6.84 16 34 H 0.07 1.12 7.59 -51.93 -0.39 0.73 16 35 H 0.06 0.85 8.13 -51.93 -0.42 0.42 16 36 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 37 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 38 H 0.08 0.91 8.08 -51.93 -0.42 0.50 16 39 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 42 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 351.29 15.07 5.29 5.29 Total: -1.00 -30.85 351.29 -8.03 -38.87 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.55 Total: 5.95 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -2.21 Total: -12.58 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.28 Total: -39.64 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.70 Total: -15.27 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.14 Total: 17.36 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.85 -8.03 -38.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255153562.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.431 kcal (2) G-P(sol) polarization free energy of solvation -30.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds