Wall clock time and date at job start Tue Mar 31 2020 06:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46871 * 2 1 4 4 H 1.09000 * 109.47163 * 179.07409 * 3 2 1 5 5 C 1.50701 * 109.47520 * 299.07255 * 3 2 1 6 6 H 1.08005 * 119.99990 * 119.99654 * 5 3 2 7 7 C 1.37873 * 120.00247 * 300.00449 * 5 3 2 8 8 N 1.31515 * 120.00158 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99899 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.47127 * 89.99764 * 9 7 5 11 11 H 1.48500 * 109.47261 * 209.99917 * 9 7 5 12 12 H 1.48500 * 109.47083 * 329.99829 * 9 7 5 13 13 N 1.46903 * 109.47330 * 59.07435 * 3 2 1 14 14 C 1.46905 * 110.99504 * 85.73645 * 13 3 2 15 15 H 1.08995 * 109.47412 * 326.97127 * 14 13 3 16 16 C 1.52994 * 109.47266 * 86.97408 * 14 13 3 17 17 C 1.50702 * 109.46511 * 206.96873 * 14 13 3 18 18 O 1.20822 * 120.00305 * 0.02562 * 17 14 13 19 19 O 1.34235 * 119.99772 * 179.97438 * 17 14 13 20 20 C 1.45197 * 116.99929 * 179.97438 * 19 17 14 21 21 C 1.50706 * 109.47155 * 180.02562 * 20 19 17 22 22 C 1.38235 * 119.99691 * 269.73406 * 21 20 19 23 23 C 1.38240 * 119.99462 * 179.76480 * 22 21 20 24 24 C 1.38232 * 119.99885 * 0.50378 * 23 22 21 25 25 C 1.38236 * 120.00086 * 359.74579 * 24 23 22 26 26 C 1.38230 * 120.00133 * 0.02562 * 25 24 23 27 27 H 1.09005 * 109.47162 * 176.21183 * 1 2 3 28 28 H 1.09003 * 109.47254 * 296.21081 * 1 2 3 29 29 H 1.09005 * 109.47362 * 56.21295 * 1 2 3 30 30 H 1.08993 * 109.47044 * 240.00180 * 2 1 3 31 31 H 1.08992 * 109.47174 * 120.00054 * 2 1 3 32 32 H 0.97006 * 119.99739 * 180.02562 * 8 7 5 33 33 H 1.00903 * 110.99842 * 209.68854 * 13 3 2 34 34 H 1.09005 * 109.47016 * 299.99432 * 16 14 13 35 35 H 1.09003 * 109.47452 * 59.99487 * 16 14 13 36 36 H 1.08997 * 109.47171 * 179.97438 * 16 14 13 37 37 H 1.08997 * 109.47698 * 300.00610 * 20 19 17 38 38 H 1.09005 * 109.46939 * 60.00668 * 20 19 17 39 39 H 1.07995 * 120.00163 * 359.97438 * 22 21 20 40 40 H 1.07996 * 119.99750 * 180.22265 * 23 22 21 41 41 H 1.08007 * 120.00167 * 179.72398 * 24 23 22 42 42 H 1.07999 * 119.99746 * 179.97438 * 25 24 23 43 43 H 1.08002 * 119.99842 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1298 1.4426 0.0166 5 6 1.5565 2.1463 -1.2418 6 1 0.9341 3.0249 -1.1569 7 6 1.9085 1.6686 -2.4863 8 7 1.4862 2.2825 -3.5699 9 14 2.9854 0.1493 -2.6332 10 1 2.1280 -1.0621 -2.6848 11 1 3.7961 0.2353 -3.8744 12 1 3.8882 0.0669 -1.4570 13 7 1.5321 2.1414 1.1881 14 6 2.4078 1.9160 2.3459 15 1 2.8411 0.9178 2.2848 16 6 3.5274 2.9586 2.3491 17 6 1.6041 2.0381 3.6148 18 8 0.4230 2.2868 3.5603 19 8 2.2002 1.8695 4.8056 20 6 1.3646 2.0021 5.9857 21 6 2.2004 1.7821 7.2203 22 6 2.3336 0.5111 7.7473 23 6 3.1042 0.3087 8.8770 24 6 3.7331 1.3787 9.4856 25 6 3.5956 2.6505 8.9614 26 6 2.8289 2.8522 7.8291 27 1 -0.3634 -1.0255 -0.0679 28 1 -0.3634 0.4539 0.9220 29 1 -0.3634 0.5715 -0.8541 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8899 32 1 1.7336 1.9461 -4.4455 33 1 1.4191 3.1276 1.0067 34 1 4.1088 2.8704 1.4313 35 1 3.0942 3.9570 2.4102 36 1 4.1769 2.7917 3.2084 37 1 0.9316 3.0019 6.0139 38 1 0.5659 1.2611 5.9505 39 1 1.8384 -0.3241 7.2746 40 1 3.2113 -0.6848 9.2867 41 1 4.3316 1.2213 10.3708 42 1 4.0866 3.4865 9.4372 43 1 2.7212 3.8459 7.4199 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255153562.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:27 Heat of formation + Delta-G solvation = -75.343803 kcal Electronic energy + Delta-G solvation = -22997.521334 eV Core-core repulsion = 19621.098221 eV Total energy + Delta-G solvation = -3376.423113 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.59217 -40.07839 -38.67017 -37.32027 -35.18125 -33.65476 -33.06698 -31.83249 -30.51814 -28.17990 -27.71296 -25.31564 -24.99202 -23.52000 -22.38206 -21.92461 -20.92378 -19.03542 -18.40653 -17.99028 -17.56604 -17.23729 -16.94540 -16.00267 -15.98858 -15.64839 -15.33563 -15.12224 -14.76874 -14.53657 -14.35443 -14.22519 -13.93409 -13.85286 -13.62712 -13.43351 -13.12463 -12.90594 -12.57010 -12.47735 -12.38849 -12.09651 -12.04778 -12.04144 -11.92331 -11.63972 -11.29447 -11.22985 -10.96394 -10.69359 -9.85644 -9.82586 -9.19414 -8.27405 -6.30629 0.20115 0.46924 1.25966 1.34270 1.36708 1.46964 1.70453 2.33328 2.88303 3.08160 3.44254 3.58788 3.79678 3.89085 4.02670 4.09662 4.13722 4.22984 4.26871 4.33615 4.36402 4.44448 4.60283 4.64716 4.70526 4.71482 4.81408 4.93001 5.00678 5.11139 5.12406 5.17423 5.31547 5.35493 5.38873 5.52813 5.58281 5.59962 5.61793 5.74003 5.94460 6.05428 6.44454 6.56776 6.78064 6.88292 7.34159 8.89014 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030649 B = 0.003086 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.362479 B = 9071.217805 C = 9100.761366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.119 4.119 3 C 0.196 3.804 4 H 0.013 0.987 5 C -0.510 4.510 6 H 0.039 0.961 7 C 0.020 3.980 8 N -0.946 5.946 9 Si 0.943 3.057 10 H -0.269 1.269 11 H -0.300 1.300 12 H -0.242 1.242 13 N -0.665 5.665 14 C 0.093 3.907 15 H 0.119 0.881 16 C -0.166 4.166 17 C 0.471 3.529 18 O -0.519 6.519 19 O -0.353 6.353 20 C 0.106 3.894 21 C -0.111 4.111 22 C -0.110 4.110 23 C -0.129 4.129 24 C -0.113 4.113 25 C -0.128 4.128 26 C -0.108 4.108 27 H 0.045 0.955 28 H 0.054 0.946 29 H 0.034 0.966 30 H 0.037 0.963 31 H 0.060 0.940 32 H 0.265 0.735 33 H 0.344 0.656 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.129 0.871 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.146 0.854 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.443 -3.488 26.458 27.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.156 4.156 3 C 0.087 3.913 4 H 0.030 0.970 5 C -0.548 4.548 6 H 0.057 0.943 7 C -0.178 4.178 8 N -0.586 5.586 9 Si 0.770 3.230 10 H -0.196 1.196 11 H -0.228 1.228 12 H -0.166 1.166 13 N -0.298 5.298 14 C -0.019 4.019 15 H 0.137 0.863 16 C -0.225 4.225 17 C 0.313 3.687 18 O -0.406 6.406 19 O -0.270 6.270 20 C 0.032 3.968 21 C -0.112 4.112 22 C -0.128 4.128 23 C -0.146 4.146 24 C -0.131 4.131 25 C -0.146 4.146 26 C -0.126 4.126 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.163 0.837 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.147 0.853 40 H 0.163 0.837 41 H 0.167 0.833 42 H 0.164 0.836 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.623 -3.905 26.471 27.565 hybrid contribution 0.489 0.222 -1.058 1.187 sum 7.112 -3.683 25.412 26.644 Atomic orbital electron populations 1.21366 0.95501 0.99232 1.01480 1.21809 0.97591 0.97345 0.98898 1.19441 0.93087 0.91623 0.87118 0.96981 1.21170 1.31172 1.12193 0.90246 0.94290 1.25677 0.97048 0.99863 0.95243 1.70034 1.47479 1.42616 0.98506 0.85939 0.79441 0.80070 0.77556 1.19578 1.22833 1.16588 1.60006 1.49056 1.16950 1.03744 1.21188 0.91156 1.03102 0.86478 0.86335 1.22339 0.97947 0.98016 1.04216 1.24063 0.87032 0.72222 0.85343 1.90633 1.18120 1.44236 1.87634 1.86569 1.43629 1.82253 1.14569 1.21878 0.91774 1.02887 0.80231 1.19562 1.01042 0.95039 0.95510 1.21311 0.98632 0.96114 0.96713 1.21475 0.97051 1.00538 0.95576 1.21616 0.98669 0.92521 1.00301 1.21479 0.98688 0.98475 0.95966 1.21305 0.96301 0.98830 0.96202 0.93643 0.92739 0.94661 0.94452 0.92185 0.92572 0.83708 0.91099 0.92034 0.89210 0.90439 0.90610 0.85338 0.83661 0.83331 0.83589 0.85193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 9.52 71.98 0.69 -4.34 16 2 C -0.12 -4.96 5.27 30.59 0.16 -4.80 16 3 C 0.20 8.70 1.70 44.17 0.07 8.78 16 4 H 0.01 0.55 6.32 -2.39 -0.02 0.53 16 5 C -0.51 -27.92 7.89 25.60 0.20 -27.72 16 6 H 0.04 2.40 7.85 -2.91 -0.02 2.38 16 7 C 0.02 1.10 5.45 84.65 0.46 1.56 16 8 N -0.95 -58.17 13.96 21.45 0.30 -57.87 16 9 Si 0.94 43.65 24.38 68.60 1.67 45.32 16 10 H -0.27 -12.12 6.86 99.48 0.68 -11.43 16 11 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 12 H -0.24 -10.13 6.53 99.48 0.65 -9.48 16 13 N -0.67 -26.56 4.82 -477.16 -2.30 -28.86 16 14 C 0.09 2.94 2.90 44.17 0.13 3.06 16 15 H 0.12 3.51 7.17 -2.39 -0.02 3.50 16 16 C -0.17 -4.42 9.08 71.98 0.65 -3.76 16 17 C 0.47 15.18 7.32 71.24 0.52 15.70 16 18 O -0.52 -20.08 16.18 21.98 0.36 -19.72 16 19 O -0.35 -9.66 10.11 -51.47 -0.52 -10.18 16 20 C 0.11 2.47 5.59 71.24 0.40 2.87 16 21 C -0.11 -2.24 5.52 -19.86 -0.11 -2.35 16 22 C -0.11 -1.95 9.70 22.27 0.22 -1.73 16 23 C -0.13 -1.80 10.05 22.27 0.22 -1.58 16 24 C -0.11 -1.41 10.05 22.27 0.22 -1.19 16 25 C -0.13 -1.77 10.05 22.27 0.22 -1.54 16 26 C -0.11 -1.89 9.70 22.27 0.22 -1.67 16 27 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 28 H 0.05 2.32 7.70 -2.39 -0.02 2.30 16 29 H 0.03 1.70 7.12 -2.38 -0.02 1.68 16 30 H 0.04 1.62 3.25 -2.39 -0.01 1.61 16 31 H 0.06 2.16 7.52 -2.39 -0.02 2.14 16 32 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 33 H 0.34 14.33 7.91 -89.69 -0.71 13.62 16 34 H 0.07 1.97 7.59 -2.38 -0.02 1.95 16 35 H 0.06 1.62 8.13 -2.39 -0.02 1.60 16 36 H 0.09 1.97 8.11 -2.39 -0.02 1.95 16 37 H 0.08 1.78 8.08 -2.39 -0.02 1.76 16 38 H 0.08 1.78 8.08 -2.38 -0.02 1.76 16 39 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 40 H 0.15 1.34 8.06 -2.91 -0.02 1.31 16 41 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16 42 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 43 H 0.13 2.00 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -67.58 351.29 4.00 -63.58 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: 0.21 Total: 26.43 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: 4.28 Total: -18.70 kcal Atomic # 7 Polarization: -84.73 SS G_CDS: -2.00 Total: -86.72 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.16 Total: -29.91 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.67 Total: 45.32 kcal Total: -67.58 4.00 -63.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255153562.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.761 kcal (2) G-P(sol) polarization free energy of solvation -67.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds