Wall clock time and date at job start Tue Mar 31 2020 06:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52995 * 109.46795 * 2 1 4 4 H 1.08998 * 109.47434 * 175.26741 * 3 2 1 5 5 C 1.50698 * 109.47658 * 55.26136 * 3 2 1 6 6 H 1.07995 * 120.00197 * 239.99817 * 5 3 2 7 7 C 1.37878 * 119.99679 * 60.00188 * 5 3 2 8 8 N 1.31517 * 119.99971 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00133 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.47104 * 359.97438 * 9 7 5 11 11 H 1.48490 * 109.47532 * 119.99555 * 9 7 5 12 12 H 1.48503 * 109.47078 * 240.00124 * 9 7 5 13 13 N 1.46911 * 109.47196 * 295.26362 * 3 2 1 14 14 C 1.46902 * 110.99834 * 277.62074 * 13 3 2 15 15 C 1.52992 * 109.47085 * 186.00558 * 14 13 3 16 16 O 1.42899 * 109.40024 * 61.54253 * 15 14 13 17 17 C 1.53062 * 109.43505 * 301.65635 * 15 14 13 18 18 C 1.53412 * 108.31721 * 191.77148 * 17 15 14 19 19 O 1.42829 * 108.37150 * 64.69062 * 18 17 15 20 20 C 1.35844 * 117.84322 * 310.73093 * 19 18 17 21 21 C 1.39147 * 118.49635 * 197.55259 * 20 19 18 22 22 C 1.37967 * 120.20916 * 180.54331 * 21 20 19 23 23 C 1.38289 * 119.95902 * 359.48678 * 22 21 20 24 24 C 1.38098 * 119.98616 * 0.16901 * 23 22 21 25 25 C 1.38368 * 121.80231 * 17.40602 * 20 19 18 26 26 H 1.08995 * 109.47077 * 305.12019 * 1 2 3 27 27 H 1.08996 * 109.46959 * 65.12041 * 1 2 3 28 28 H 1.08995 * 109.46760 * 185.12095 * 1 2 3 29 29 H 1.09000 * 109.46950 * 239.99735 * 2 1 3 30 30 H 1.08998 * 109.46891 * 119.99574 * 2 1 3 31 31 H 0.96999 * 120.00207 * 180.02562 * 8 7 5 32 32 H 1.00901 * 110.99561 * 41.57154 * 13 3 2 33 33 H 1.09002 * 109.47129 * 66.00565 * 14 13 3 34 34 H 1.09001 * 109.46948 * 306.01115 * 14 13 3 35 35 H 0.96697 * 114.00105 * 179.88299 * 16 15 14 36 36 H 1.08999 * 109.69890 * 72.06271 * 17 15 14 37 37 H 1.09008 * 109.72396 * 311.49321 * 17 15 14 38 38 H 1.08997 * 109.68483 * 304.97050 * 18 17 15 39 39 H 1.09008 * 109.68260 * 184.41121 * 18 17 15 40 40 H 1.07997 * 119.89490 * 0.28724 * 21 20 19 41 41 H 1.08001 * 120.01674 * 179.76789 * 22 21 20 42 42 H 1.07996 * 120.00648 * 180.18375 * 23 22 21 43 43 H 1.07997 * 119.84617 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1267 1.4438 0.0848 5 6 1.4442 2.1860 1.1675 6 1 0.8338 3.0604 0.9962 7 6 1.6783 1.7501 2.4544 8 7 2.4212 0.6850 2.6630 9 14 0.9392 2.6712 3.9017 10 1 0.1494 3.8256 3.4025 11 1 0.0531 1.7593 4.6686 12 1 2.0280 3.1617 4.7845 13 7 1.6459 2.1012 -1.2526 14 6 2.5822 1.7745 -2.3364 15 6 2.2282 2.5923 -3.5800 16 8 2.3546 3.9847 -3.2842 17 6 0.7867 2.2889 -3.9958 18 6 0.5531 2.8799 -5.3921 19 8 1.3982 2.1952 -6.3179 20 6 2.7114 2.0593 -5.9975 21 6 3.6122 1.7419 -7.0094 22 6 4.9523 1.5845 -6.7217 23 6 5.4047 1.7528 -5.4258 24 6 4.5146 2.0748 -4.4202 25 6 3.1675 2.2306 -4.7025 26 1 -0.3633 0.5912 0.8405 27 1 -0.3633 0.4323 -0.9323 28 1 -0.3633 -1.0235 0.0917 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.5856 0.3781 3.5683 32 1 0.6999 1.8587 -1.5065 33 1 2.5127 0.7117 -2.5686 34 1 3.5986 2.0120 -2.0224 35 1 2.1469 4.5654 -4.0290 36 1 0.0960 2.7422 -3.2848 37 1 0.6309 1.2103 -4.0226 38 1 0.7985 3.9419 -5.3871 39 1 -0.4901 2.7449 -5.6781 40 1 3.2606 1.6144 -8.0226 41 1 5.6482 1.3345 -7.5088 42 1 6.4540 1.6326 -5.2002 43 1 4.8703 2.2052 -3.4089 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154500.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:18 Heat of formation + Delta-G solvation = -61.385361 kcal Electronic energy + Delta-G solvation = -24154.468600 eV Core-core repulsion = 20778.650770 eV Total energy + Delta-G solvation = -3375.817830 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.05155 -37.62426 -37.54162 -35.95320 -32.98353 -31.86319 -30.81388 -30.45865 -29.99368 -27.20279 -25.40021 -24.14076 -23.33404 -22.89198 -21.51419 -19.77221 -19.23719 -18.00221 -17.26003 -16.45383 -16.18951 -16.04611 -14.97548 -14.85062 -14.66681 -14.24020 -13.99293 -13.78534 -13.58723 -13.28244 -12.94547 -12.57498 -12.39881 -12.32345 -12.07399 -11.88667 -11.70550 -11.54855 -11.20560 -11.08453 -10.92293 -10.73188 -10.50853 -10.18829 -9.97985 -9.79501 -9.69568 -9.55062 -8.97323 -8.89183 -8.32308 -8.26556 -7.15478 -5.95107 -3.96107 1.22417 1.37785 3.17266 3.33281 3.41488 3.46762 3.68125 4.42079 4.43219 4.51715 4.61174 4.68035 4.83483 5.00055 5.04020 5.20931 5.33552 5.36824 5.42858 5.46907 5.53883 5.65614 5.92864 5.97427 6.01510 6.14125 6.22017 6.27538 6.33796 6.36335 6.45606 6.55186 6.57100 6.71384 6.87900 7.27853 7.30034 7.33905 7.51294 7.70555 7.83764 7.92585 8.30667 8.56254 8.65722 9.10110 9.67440 11.12133 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024334 B = 0.004091 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.365850 B = 6842.563863 C = 7154.790942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.148 4.148 3 C 0.215 3.785 4 H 0.033 0.967 5 C -0.485 4.485 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.672 5.672 14 C 0.080 3.920 15 C 0.185 3.815 16 O -0.524 6.524 17 C -0.188 4.188 18 C 0.060 3.940 19 O -0.318 6.318 20 C 0.138 3.862 21 C -0.159 4.159 22 C -0.084 4.084 23 C -0.159 4.159 24 C -0.059 4.059 25 C -0.189 4.189 26 H 0.069 0.931 27 H 0.025 0.975 28 H 0.023 0.977 29 H 0.009 0.991 30 H 0.093 0.907 31 H 0.258 0.742 32 H 0.324 0.676 33 H 0.031 0.969 34 H 0.074 0.926 35 H 0.359 0.641 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.110 0.890 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.635 1.717 -18.374 18.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.187 4.187 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.524 4.524 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.303 5.303 14 C -0.051 4.051 15 C 0.144 3.856 16 O -0.327 6.327 17 C -0.226 4.226 18 C -0.015 4.015 19 O -0.232 6.232 20 C 0.093 3.907 21 C -0.177 4.177 22 C -0.102 4.102 23 C -0.177 4.177 24 C -0.077 4.077 25 C -0.191 4.191 26 H 0.088 0.912 27 H 0.044 0.956 28 H 0.042 0.958 29 H 0.028 0.972 30 H 0.112 0.888 31 H 0.068 0.932 32 H 0.142 0.858 33 H 0.049 0.951 34 H 0.093 0.907 35 H 0.204 0.796 36 H 0.121 0.879 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.128 0.872 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.075 1.915 -17.619 17.756 hybrid contribution -0.727 -0.368 0.289 0.865 sum 0.348 1.547 -17.331 17.403 Atomic orbital electron populations 1.21598 0.97764 0.98704 1.00646 1.22138 0.94951 1.01358 1.00266 1.19227 0.95977 0.88375 0.85653 0.94949 1.21093 1.30353 1.11353 0.89594 0.91948 1.24911 0.95585 0.95178 0.98741 1.69891 1.39072 1.23985 1.20741 0.86522 0.78922 0.79858 0.82605 1.19746 1.21308 1.21211 1.60757 1.03841 1.62864 1.02792 1.21831 0.98889 0.94326 0.90018 1.19938 0.90382 0.83197 0.92110 1.86874 1.91720 1.14576 1.39546 1.22991 0.99154 1.03187 0.97256 1.23027 0.94425 0.95428 0.88597 1.85980 1.16755 1.73447 1.47048 1.18767 0.83294 0.96384 0.92252 1.20554 0.92266 1.06652 0.98252 1.20937 0.94553 0.97871 0.96810 1.21077 0.99926 1.03615 0.93072 1.21102 0.91803 0.94950 0.99878 1.20550 0.96577 1.08107 0.93867 0.91175 0.95605 0.95755 0.97198 0.88821 0.93227 0.85771 0.95065 0.90718 0.79590 0.87866 0.89867 0.91872 0.87211 0.85456 0.85572 0.85803 0.85134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.39 37.16 0.35 -2.39 16 2 C -0.15 -3.45 5.51 -26.73 -0.15 -3.59 16 3 C 0.22 5.32 2.33 -68.86 -0.16 5.16 16 4 H 0.03 0.90 7.75 -51.93 -0.40 0.49 16 5 C -0.49 -13.16 7.27 -34.44 -0.25 -13.41 16 6 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 7 C 0.06 1.54 5.29 -17.82 -0.09 1.44 16 8 N -0.90 -25.35 11.37 55.43 0.63 -24.72 16 9 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 N -0.67 -14.14 6.00 -107.95 -0.65 -14.79 16 14 C 0.08 1.45 4.19 -3.83 -0.02 1.44 16 15 C 0.19 2.79 0.76 -91.71 -0.07 2.72 16 16 O -0.52 -8.26 12.85 -35.23 -0.45 -8.71 16 17 C -0.19 -2.44 4.42 -26.49 -0.12 -2.56 16 18 C 0.06 0.64 6.98 37.37 0.26 0.90 16 19 O -0.32 -4.06 10.27 -19.25 -0.20 -4.26 16 20 C 0.14 1.85 6.47 -39.20 -0.25 1.59 16 21 C -0.16 -1.85 9.94 -39.34 -0.39 -2.24 16 22 C -0.08 -0.88 10.04 -39.66 -0.40 -1.28 16 23 C -0.16 -1.83 10.04 -39.61 -0.40 -2.23 16 24 C -0.06 -0.81 9.10 -39.53 -0.36 -1.17 16 25 C -0.19 -2.68 5.03 -104.44 -0.52 -3.20 16 26 H 0.07 1.62 6.88 -51.93 -0.36 1.27 16 27 H 0.02 0.48 6.65 -51.93 -0.35 0.14 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.01 0.21 7.29 -51.93 -0.38 -0.17 16 30 H 0.09 2.46 6.21 -51.93 -0.32 2.14 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.32 6.44 5.25 -39.29 -0.21 6.23 16 33 H 0.03 0.58 7.35 -51.93 -0.38 0.19 16 34 H 0.07 1.45 6.36 -51.93 -0.33 1.12 16 35 H 0.36 4.24 7.68 45.56 0.35 4.59 16 36 H 0.10 1.36 7.38 -51.93 -0.38 0.98 16 37 H 0.08 1.12 8.10 -51.92 -0.42 0.70 16 38 H 0.06 0.59 6.87 -51.93 -0.36 0.23 16 39 H 0.11 0.91 8.14 -51.92 -0.42 0.49 16 40 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 43 H 0.13 1.83 6.50 -52.49 -0.34 1.49 16 LS Contribution 334.96 15.07 5.05 5.05 Total: -1.00 -30.09 334.96 -8.75 -38.84 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -5.53 Total: 11.02 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -2.57 Total: -18.83 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: -0.02 Total: -39.51 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: -0.65 Total: -12.97 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.09 -8.75 -38.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154500.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.547 kcal (2) G-P(sol) polarization free energy of solvation -30.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds