Wall clock time and date at job start Tue Mar 31 2020 06:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52995 * 109.46795 * 2 1 4 4 H 1.08998 * 109.47434 * 175.26741 * 3 2 1 5 5 C 1.50698 * 109.47658 * 55.26136 * 3 2 1 6 6 H 1.07995 * 120.00197 * 239.99817 * 5 3 2 7 7 C 1.37878 * 119.99679 * 60.00188 * 5 3 2 8 8 N 1.31517 * 119.99971 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00133 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.47104 * 359.97438 * 9 7 5 11 11 H 1.48490 * 109.47532 * 119.99555 * 9 7 5 12 12 H 1.48503 * 109.47078 * 240.00124 * 9 7 5 13 13 N 1.46911 * 109.47196 * 295.26362 * 3 2 1 14 14 C 1.46902 * 110.99834 * 277.62074 * 13 3 2 15 15 C 1.52992 * 109.47085 * 186.00558 * 14 13 3 16 16 O 1.42899 * 109.40024 * 61.54253 * 15 14 13 17 17 C 1.53062 * 109.43505 * 301.65635 * 15 14 13 18 18 C 1.53412 * 108.31721 * 191.77148 * 17 15 14 19 19 O 1.42829 * 108.37150 * 64.69062 * 18 17 15 20 20 C 1.35844 * 117.84322 * 310.73093 * 19 18 17 21 21 C 1.39147 * 118.49635 * 197.55259 * 20 19 18 22 22 C 1.37967 * 120.20916 * 180.54331 * 21 20 19 23 23 C 1.38289 * 119.95902 * 359.48678 * 22 21 20 24 24 C 1.38098 * 119.98616 * 0.16901 * 23 22 21 25 25 C 1.38368 * 121.80231 * 17.40602 * 20 19 18 26 26 H 1.08995 * 109.47077 * 305.12019 * 1 2 3 27 27 H 1.08996 * 109.46959 * 65.12041 * 1 2 3 28 28 H 1.08995 * 109.46760 * 185.12095 * 1 2 3 29 29 H 1.09000 * 109.46950 * 239.99735 * 2 1 3 30 30 H 1.08998 * 109.46891 * 119.99574 * 2 1 3 31 31 H 0.96999 * 120.00207 * 180.02562 * 8 7 5 32 32 H 1.00901 * 110.99561 * 41.57154 * 13 3 2 33 33 H 1.09002 * 109.47129 * 66.00565 * 14 13 3 34 34 H 1.09001 * 109.46948 * 306.01115 * 14 13 3 35 35 H 0.96697 * 114.00105 * 179.88299 * 16 15 14 36 36 H 1.08999 * 109.69890 * 72.06271 * 17 15 14 37 37 H 1.09008 * 109.72396 * 311.49321 * 17 15 14 38 38 H 1.08997 * 109.68483 * 304.97050 * 18 17 15 39 39 H 1.09008 * 109.68260 * 184.41121 * 18 17 15 40 40 H 1.07997 * 119.89490 * 0.28724 * 21 20 19 41 41 H 1.08001 * 120.01674 * 179.76789 * 22 21 20 42 42 H 1.07996 * 120.00648 * 180.18375 * 23 22 21 43 43 H 1.07997 * 119.84617 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1267 1.4438 0.0848 5 6 1.4442 2.1860 1.1675 6 1 0.8338 3.0604 0.9962 7 6 1.6783 1.7501 2.4544 8 7 2.4212 0.6850 2.6630 9 14 0.9392 2.6712 3.9017 10 1 0.1494 3.8256 3.4025 11 1 0.0531 1.7593 4.6686 12 1 2.0280 3.1617 4.7845 13 7 1.6459 2.1012 -1.2526 14 6 2.5822 1.7745 -2.3364 15 6 2.2282 2.5923 -3.5800 16 8 2.3546 3.9847 -3.2842 17 6 0.7867 2.2889 -3.9958 18 6 0.5531 2.8799 -5.3921 19 8 1.3982 2.1952 -6.3179 20 6 2.7114 2.0593 -5.9975 21 6 3.6122 1.7419 -7.0094 22 6 4.9523 1.5845 -6.7217 23 6 5.4047 1.7528 -5.4258 24 6 4.5146 2.0748 -4.4202 25 6 3.1675 2.2306 -4.7025 26 1 -0.3633 0.5912 0.8405 27 1 -0.3633 0.4323 -0.9323 28 1 -0.3633 -1.0235 0.0917 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.5856 0.3781 3.5683 32 1 0.6999 1.8587 -1.5065 33 1 2.5127 0.7117 -2.5686 34 1 3.5986 2.0120 -2.0224 35 1 2.1469 4.5654 -4.0290 36 1 0.0960 2.7422 -3.2848 37 1 0.6309 1.2103 -4.0226 38 1 0.7985 3.9419 -5.3871 39 1 -0.4901 2.7449 -5.6781 40 1 3.2606 1.6144 -8.0226 41 1 5.6482 1.3345 -7.5088 42 1 6.4540 1.6326 -5.2002 43 1 4.8703 2.2052 -3.4089 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154500.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:17 Heat of formation + Delta-G solvation = -82.105215 kcal Electronic energy + Delta-G solvation = -24155.367080 eV Core-core repulsion = 20778.650770 eV Total energy + Delta-G solvation = -3376.716310 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.05505 -38.95604 -38.47611 -37.57465 -34.61779 -33.43005 -32.07225 -31.68850 -31.04396 -28.88271 -27.05409 -25.23258 -25.05802 -24.02378 -22.67526 -21.24692 -20.74010 -19.00456 -18.35685 -18.18530 -17.31892 -17.14779 -16.75594 -16.32160 -15.86300 -15.50608 -15.17878 -15.02020 -14.87708 -14.58682 -14.42708 -14.24747 -13.90424 -13.76372 -13.40872 -13.06322 -12.85300 -12.79853 -12.72490 -12.49793 -12.45471 -12.38669 -11.98246 -11.89786 -11.76525 -11.46706 -11.18681 -10.91308 -10.87002 -10.44144 -9.89830 -9.20272 -8.91071 -8.05729 -6.14026 0.27987 0.43460 1.41583 1.44322 1.55834 2.29710 2.45753 2.74065 3.23169 3.26248 3.35832 3.57125 3.65946 3.83215 3.95015 4.12799 4.21783 4.39620 4.41238 4.47792 4.51464 4.52321 4.59005 4.60546 4.66585 4.71007 4.81185 4.99104 5.00301 5.06428 5.07595 5.29155 5.35312 5.40831 5.50824 5.58764 5.68491 5.72961 5.81497 5.82591 6.30678 6.41056 6.65598 6.79170 6.88790 6.99300 7.53721 9.00183 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024334 B = 0.004091 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.365850 B = 6842.563863 C = 7154.790942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.140 4.140 3 C 0.221 3.779 4 H -0.008 1.008 5 C -0.497 4.497 6 H 0.052 0.948 7 C 0.013 3.987 8 N -0.922 5.922 9 Si 0.953 3.047 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.285 1.285 13 N -0.673 5.673 14 C 0.083 3.917 15 C 0.191 3.809 16 O -0.546 6.546 17 C -0.184 4.184 18 C 0.062 3.938 19 O -0.324 6.324 20 C 0.128 3.872 21 C -0.161 4.161 22 C -0.075 4.075 23 C -0.160 4.160 24 C -0.082 4.082 25 C -0.205 4.205 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.043 0.957 29 H 0.021 0.979 30 H 0.062 0.938 31 H 0.259 0.741 32 H 0.332 0.668 33 H 0.029 0.971 34 H 0.053 0.947 35 H 0.376 0.624 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.138 0.862 40 H 0.148 0.852 41 H 0.162 0.838 42 H 0.143 0.857 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.225 1.977 -20.497 20.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.180 4.180 3 C 0.113 3.887 4 H 0.010 0.990 5 C -0.536 4.536 6 H 0.070 0.930 7 C -0.185 4.185 8 N -0.562 5.562 9 Si 0.779 3.221 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.212 1.212 13 N -0.304 5.304 14 C -0.047 4.047 15 C 0.150 3.850 16 O -0.352 6.352 17 C -0.222 4.222 18 C -0.012 4.012 19 O -0.238 6.238 20 C 0.082 3.918 21 C -0.180 4.180 22 C -0.093 4.093 23 C -0.178 4.178 24 C -0.101 4.101 25 C -0.206 4.206 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.040 0.960 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.152 0.848 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.224 0.776 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.156 0.844 40 H 0.166 0.834 41 H 0.179 0.821 42 H 0.161 0.839 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.204 2.185 -19.768 19.889 hybrid contribution -0.377 -0.448 0.891 1.066 sum -0.173 1.737 -18.877 18.957 Atomic orbital electron populations 1.21480 0.95693 0.99742 1.00903 1.21970 0.96715 1.00022 0.99256 1.18966 0.93364 0.89441 0.86951 0.99024 1.21279 1.30318 1.11226 0.90773 0.92955 1.25605 0.95923 0.95891 1.01095 1.70023 1.39937 1.25077 1.21191 0.85582 0.78167 0.78816 0.79520 1.19327 1.20590 1.21154 1.60619 1.04773 1.62561 1.02457 1.21785 0.97216 0.94994 0.90678 1.19716 0.92157 0.82421 0.90686 1.86805 1.92055 1.15279 1.41109 1.22915 0.97344 1.02948 0.98980 1.23210 0.95576 0.95852 0.86601 1.85974 1.16579 1.73786 1.47448 1.18948 0.83907 0.96770 0.92154 1.20921 0.92492 1.05708 0.98851 1.21344 0.94823 0.96042 0.97060 1.21351 1.00595 1.02741 0.93147 1.21136 0.92443 0.96593 0.99888 1.20438 0.96437 1.09661 0.94097 0.93378 0.93268 0.93824 0.96013 0.91918 0.93224 0.84826 0.95329 0.92861 0.77622 0.88144 0.90503 0.90384 0.84434 0.83377 0.82066 0.83881 0.86899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 9.39 71.99 0.68 -4.35 16 2 C -0.14 -6.66 5.51 30.60 0.17 -6.49 16 3 C 0.22 11.34 2.33 44.16 0.10 11.45 16 4 H -0.01 -0.48 7.75 -2.39 -0.02 -0.50 16 5 C -0.50 -27.60 7.27 25.60 0.19 -27.41 16 6 H 0.05 2.96 7.81 -2.91 -0.02 2.93 16 7 C 0.01 0.71 5.29 84.65 0.45 1.16 16 8 N -0.92 -53.39 11.37 21.45 0.24 -53.14 16 9 Si 0.95 44.39 29.54 68.60 2.03 46.41 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 13 N -0.67 -29.00 6.00 -495.44 -2.97 -31.97 16 14 C 0.08 3.15 4.19 86.30 0.36 3.52 16 15 C 0.19 5.77 0.76 -11.50 -0.01 5.77 16 16 O -0.55 -17.29 12.85 -148.98 -1.91 -19.21 16 17 C -0.18 -4.57 4.42 30.75 0.14 -4.43 16 18 C 0.06 1.16 6.98 72.12 0.50 1.67 16 19 O -0.32 -7.50 10.27 -91.79 -0.94 -8.45 16 20 C 0.13 3.19 6.47 22.52 0.15 3.33 16 21 C -0.16 -3.33 9.94 22.42 0.22 -3.10 16 22 C -0.07 -1.36 10.04 22.22 0.22 -1.14 16 23 C -0.16 -3.47 10.04 22.25 0.22 -3.25 16 24 C -0.08 -2.28 9.10 22.30 0.20 -2.08 16 25 C -0.20 -5.73 5.03 -19.75 -0.10 -5.83 16 26 H 0.05 2.21 6.88 -2.39 -0.02 2.19 16 27 H 0.05 1.78 6.65 -2.39 -0.02 1.77 16 28 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.02 0.95 7.29 -2.39 -0.02 0.93 16 30 H 0.06 3.39 6.21 -2.39 -0.01 3.38 16 31 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 32 H 0.33 13.20 5.25 -89.69 -0.47 12.73 16 33 H 0.03 1.09 7.35 -2.39 -0.02 1.07 16 34 H 0.05 2.22 6.36 -2.39 -0.02 2.20 16 35 H 0.38 8.63 7.68 -74.06 -0.57 8.06 16 36 H 0.10 2.53 7.38 -2.39 -0.02 2.51 16 37 H 0.08 1.99 8.10 -2.38 -0.02 1.98 16 38 H 0.08 1.24 6.87 -2.39 -0.02 1.23 16 39 H 0.14 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.15 2.40 8.06 -2.91 -0.02 2.37 16 41 H 0.16 1.78 8.06 -2.91 -0.02 1.75 16 42 H 0.14 2.45 8.06 -2.91 -0.02 2.42 16 43 H 0.11 3.42 6.50 -2.91 -0.02 3.40 16 Total: -1.00 -66.14 334.96 -0.08 -66.22 By element: Atomic # 1 Polarization: 31.35 SS G_CDS: -0.01 Total: 31.34 kcal Atomic # 6 Polarization: -34.69 SS G_CDS: 3.49 Total: -31.20 kcal Atomic # 7 Polarization: -82.39 SS G_CDS: -2.73 Total: -85.12 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -2.86 Total: -27.66 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -66.14 -0.08 -66.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154500.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.888 kcal (2) G-P(sol) polarization free energy of solvation -66.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds