Wall clock time and date at job start Tue Mar 31 2020 06:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47160 * 2 1 4 4 H 1.09004 * 109.47459 * 181.00315 * 3 2 1 5 5 C 1.50705 * 109.47020 * 301.00239 * 3 2 1 6 6 H 1.08001 * 119.99870 * 119.99648 * 5 3 2 7 7 C 1.37876 * 119.99861 * 300.00077 * 5 3 2 8 8 N 1.31518 * 120.00187 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99858 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47569 * 59.99827 * 9 7 5 11 11 H 1.48506 * 109.47145 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47298 * 299.99436 * 9 7 5 13 13 N 1.46901 * 109.47068 * 61.00056 * 3 2 1 14 14 C 1.46898 * 110.99766 * 84.66437 * 13 3 2 15 15 C 1.53006 * 109.46946 * 177.46362 * 14 13 3 16 16 O 1.42897 * 109.43766 * 60.60695 * 15 14 13 17 17 C 1.53071 * 109.43928 * 300.68538 * 15 14 13 18 18 C 1.53408 * 108.28172 * 191.68199 * 17 15 14 19 19 O 1.42823 * 108.38967 * 64.73523 * 18 17 15 20 20 C 1.35846 * 117.87952 * 310.93652 * 19 18 17 21 21 C 1.39147 * 118.50746 * 196.93256 * 20 19 18 22 22 C 1.37965 * 120.22302 * 180.22259 * 21 20 19 23 23 C 1.38295 * 119.95673 * 0.02562 * 22 21 20 24 24 C 1.38105 * 119.98018 * 359.90971 * 23 22 21 25 25 C 1.38372 * 121.80564 * 17.00158 * 20 19 18 26 26 H 1.08996 * 109.47388 * 305.24186 * 1 2 3 27 27 H 1.09003 * 109.47002 * 65.23894 * 1 2 3 28 28 H 1.08998 * 109.47324 * 185.24051 * 1 2 3 29 29 H 1.08997 * 109.47511 * 239.99831 * 2 1 3 30 30 H 1.09003 * 109.47428 * 119.99665 * 2 1 3 31 31 H 0.96998 * 120.00137 * 179.97438 * 8 7 5 32 32 H 1.00898 * 110.99693 * 208.61433 * 13 3 2 33 33 H 1.09001 * 109.47093 * 297.45879 * 14 13 3 34 34 H 1.08998 * 109.47575 * 57.46282 * 14 13 3 35 35 H 0.96699 * 113.99829 * 180.02562 * 16 15 14 36 36 H 1.09008 * 109.70005 * 311.37869 * 17 15 14 37 37 H 1.08998 * 109.70304 * 71.94165 * 17 15 14 38 38 H 1.08992 * 109.68528 * 184.46368 * 18 17 15 39 39 H 1.09000 * 109.67955 * 305.01733 * 18 17 15 40 40 H 1.08001 * 119.88791 * 0.20526 * 21 20 19 41 41 H 1.07999 * 120.02572 * 179.97438 * 22 21 20 42 42 H 1.08001 * 120.00809 * 179.88515 * 23 22 21 43 43 H 1.08000 * 119.83897 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 -0.0180 5 6 1.5174 2.1601 -1.2179 6 1 0.8982 3.0375 -1.1034 7 6 1.8298 1.6963 -2.4782 8 7 2.5841 0.6281 -2.6175 9 14 1.1827 2.5861 -3.9877 10 1 1.6781 3.9860 -3.9876 11 1 1.6569 1.8927 -5.2123 12 1 -0.3022 2.5866 -3.9636 13 7 1.5701 2.1280 1.2114 14 6 2.4683 1.8690 2.3446 15 6 1.9827 2.6483 3.5685 16 8 0.6639 2.2194 3.9129 17 6 1.9637 4.1444 3.2453 18 6 1.7621 4.9172 4.5551 19 8 2.8998 4.6945 5.3893 20 6 3.3147 3.4135 5.5692 21 6 4.1691 3.1351 6.6316 22 6 4.6158 1.8472 6.8444 23 6 4.2145 0.8286 5.9996 24 6 3.3654 1.1009 4.9449 25 6 2.9118 2.3915 4.7278 26 1 -0.3634 0.5930 0.8393 27 1 -0.3633 0.4304 -0.9332 28 1 -0.3634 -1.0233 0.0939 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.8036 0.3016 -3.5042 32 1 1.4684 3.1187 1.0497 33 1 2.4703 0.8026 2.5702 34 1 3.4784 2.1881 2.0880 35 1 0.2912 2.6723 4.6817 36 1 2.9108 4.4340 2.7898 37 1 1.1446 4.3619 2.5598 38 1 1.6658 5.9817 4.3422 39 1 0.8632 4.5599 5.0575 40 1 4.4838 3.9299 7.2917 41 1 5.2792 1.6348 7.6697 42 1 4.5652 -0.1795 6.1643 43 1 3.0531 0.3036 4.2868 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154501.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:21 Heat of formation + Delta-G solvation = -62.367019 kcal Electronic energy + Delta-G solvation = -24140.108836 eV Core-core repulsion = 20764.248439 eV Total energy + Delta-G solvation = -3375.860397 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.05987 -37.61042 -37.52648 -35.74400 -33.02719 -31.85425 -30.80123 -30.52732 -29.98478 -27.27652 -25.31174 -24.14040 -23.22661 -22.84236 -21.52333 -19.73836 -19.00845 -18.01271 -17.24219 -16.53689 -16.22631 -16.13087 -15.01565 -14.89181 -14.42589 -14.25292 -14.04384 -13.68161 -13.64598 -13.17927 -13.09123 -12.67316 -12.38171 -12.08645 -12.02702 -11.79141 -11.65684 -11.48333 -11.16329 -11.08748 -10.91401 -10.80074 -10.38786 -10.23038 -9.91557 -9.81145 -9.64618 -9.29668 -8.94875 -8.74989 -8.45007 -8.26520 -7.17764 -6.00308 -4.05757 1.22111 1.37676 3.16881 3.31050 3.36073 3.38450 3.67613 4.38876 4.40763 4.48969 4.59526 4.67368 4.82991 4.99542 5.03607 5.20492 5.30727 5.33178 5.42715 5.46132 5.53671 5.64736 5.92386 5.98296 6.01286 6.19375 6.21714 6.28977 6.45428 6.54442 6.59055 6.71062 6.78039 6.92278 7.31301 7.33210 7.34231 7.53942 7.78034 7.78564 7.82770 7.88358 8.29474 8.41196 8.68542 9.02982 9.58810 11.05652 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023081 B = 0.004172 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.834739 B = 6709.352631 C = 7160.107572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.100 4.100 3 C 0.216 3.784 4 H -0.002 1.002 5 C -0.512 4.512 6 H 0.058 0.942 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.893 3.107 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.673 5.673 14 C 0.081 3.919 15 C 0.184 3.816 16 O -0.525 6.525 17 C -0.190 4.190 18 C 0.061 3.939 19 O -0.318 6.318 20 C 0.139 3.861 21 C -0.159 4.159 22 C -0.083 4.083 23 C -0.159 4.159 24 C -0.059 4.059 25 C -0.190 4.190 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.011 0.989 29 H 0.084 0.916 30 H 0.008 0.992 31 H 0.261 0.739 32 H 0.327 0.673 33 H 0.074 0.926 34 H 0.032 0.968 35 H 0.359 0.641 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.063 0.937 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.447 4.806 17.491 18.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.139 4.139 3 C 0.108 3.892 4 H 0.015 0.985 5 C -0.550 4.550 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.202 1.202 13 N -0.304 5.304 14 C -0.049 4.049 15 C 0.143 3.857 16 O -0.329 6.329 17 C -0.227 4.227 18 C -0.014 4.014 19 O -0.232 6.232 20 C 0.094 3.906 21 C -0.177 4.177 22 C -0.101 4.101 23 C -0.177 4.177 24 C -0.077 4.077 25 C -0.191 4.191 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.030 0.970 29 H 0.103 0.897 30 H 0.027 0.973 31 H 0.071 0.929 32 H 0.145 0.855 33 H 0.092 0.908 34 H 0.050 0.950 35 H 0.205 0.795 36 H 0.103 0.897 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.081 0.919 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.258 3.963 17.040 17.540 hybrid contribution 0.336 1.214 -0.792 1.488 sum 1.594 5.177 16.248 17.127 Atomic orbital electron populations 1.21431 0.97417 0.97129 1.01649 1.21404 0.95191 0.98125 0.99176 1.19143 0.92910 0.91724 0.85405 0.98462 1.21118 1.31645 1.11954 0.90309 0.92429 1.24876 0.95069 0.95014 0.98839 1.69879 1.36994 1.22913 1.22966 0.86644 0.79367 0.79647 0.82232 1.20438 1.21360 1.20208 1.60656 1.49001 1.14954 1.05801 1.21879 0.93788 0.99616 0.89624 1.19961 0.81609 0.92610 0.91548 1.86850 1.28919 1.66064 1.51053 1.23009 1.05302 0.96075 0.98351 1.23017 0.86549 1.01835 0.90014 1.85978 1.46805 1.23675 1.66750 1.18769 0.95125 0.83178 0.93555 1.20549 1.01800 0.97552 0.97834 1.20937 0.98395 0.91995 0.98801 1.21078 1.00481 0.99507 0.96669 1.21093 0.94474 0.95743 0.96387 1.20527 1.04778 0.94245 0.99575 0.93030 0.93138 0.97009 0.89735 0.97319 0.92932 0.85498 0.90816 0.95018 0.79521 0.89651 0.87847 0.87178 0.91908 0.85448 0.85564 0.85812 0.85168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.76 9.47 37.15 0.35 -2.41 16 2 C -0.10 -2.48 5.57 -26.73 -0.15 -2.63 16 3 C 0.22 5.37 2.30 -68.86 -0.16 5.21 16 4 H 0.00 -0.06 7.77 -51.93 -0.40 -0.46 16 5 C -0.51 -13.67 7.38 -34.44 -0.25 -13.93 16 6 H 0.06 1.52 7.62 -52.49 -0.40 1.12 16 7 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -25.15 11.33 55.43 0.63 -24.52 16 9 Si 0.89 21.12 29.54 -169.99 -5.02 16.09 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.67 -14.06 5.37 -107.94 -0.58 -14.64 16 14 C 0.08 1.48 4.23 -3.82 -0.02 1.46 16 15 C 0.18 2.73 0.76 -91.70 -0.07 2.66 16 16 O -0.53 -7.96 12.84 -35.23 -0.45 -8.41 16 17 C -0.19 -2.45 4.47 -26.48 -0.12 -2.57 16 18 C 0.06 0.64 6.98 37.37 0.26 0.90 16 19 O -0.32 -4.07 10.27 -19.26 -0.20 -4.27 16 20 C 0.14 1.86 6.47 -39.19 -0.25 1.60 16 21 C -0.16 -1.86 9.94 -39.34 -0.39 -2.25 16 22 C -0.08 -0.88 10.04 -39.66 -0.40 -1.28 16 23 C -0.16 -1.83 10.04 -39.61 -0.40 -2.23 16 24 C -0.06 -0.80 9.10 -39.53 -0.36 -1.16 16 25 C -0.19 -2.67 5.03 -104.44 -0.53 -3.19 16 26 H 0.05 1.18 7.48 -51.93 -0.39 0.79 16 27 H 0.05 1.25 7.38 -51.93 -0.38 0.86 16 28 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.08 2.30 6.10 -51.93 -0.32 1.99 16 30 H 0.01 0.19 7.45 -51.93 -0.39 -0.20 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.33 6.63 6.44 -39.29 -0.25 6.37 16 33 H 0.07 1.41 5.86 -51.93 -0.30 1.10 16 34 H 0.03 0.60 8.00 -51.93 -0.42 0.19 16 35 H 0.36 4.08 7.67 45.56 0.35 4.43 16 36 H 0.08 1.18 8.11 -51.92 -0.42 0.76 16 37 H 0.10 1.35 7.15 -51.93 -0.37 0.98 16 38 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.57 6.85 -51.93 -0.36 0.22 16 40 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 41 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 43 H 0.13 1.81 6.47 -52.49 -0.34 1.47 16 LS Contribution 336.86 15.07 5.08 5.08 Total: -1.00 -29.89 336.86 -8.76 -38.65 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -5.64 Total: 10.19 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -2.57 Total: -18.17 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.05 Total: -39.16 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.65 Total: -12.68 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.89 -8.76 -38.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154501.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.717 kcal (2) G-P(sol) polarization free energy of solvation -29.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds