Wall clock time and date at job start Tue Mar 31 2020 06:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47160 * 2 1 4 4 H 1.09004 * 109.47459 * 181.00315 * 3 2 1 5 5 C 1.50705 * 109.47020 * 301.00239 * 3 2 1 6 6 H 1.08001 * 119.99870 * 119.99648 * 5 3 2 7 7 C 1.37876 * 119.99861 * 300.00077 * 5 3 2 8 8 N 1.31518 * 120.00187 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99858 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47569 * 59.99827 * 9 7 5 11 11 H 1.48506 * 109.47145 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47298 * 299.99436 * 9 7 5 13 13 N 1.46901 * 109.47068 * 61.00056 * 3 2 1 14 14 C 1.46898 * 110.99766 * 84.66437 * 13 3 2 15 15 C 1.53006 * 109.46946 * 177.46362 * 14 13 3 16 16 O 1.42897 * 109.43766 * 60.60695 * 15 14 13 17 17 C 1.53071 * 109.43928 * 300.68538 * 15 14 13 18 18 C 1.53408 * 108.28172 * 191.68199 * 17 15 14 19 19 O 1.42823 * 108.38967 * 64.73523 * 18 17 15 20 20 C 1.35846 * 117.87952 * 310.93652 * 19 18 17 21 21 C 1.39147 * 118.50746 * 196.93256 * 20 19 18 22 22 C 1.37965 * 120.22302 * 180.22259 * 21 20 19 23 23 C 1.38295 * 119.95673 * 0.02562 * 22 21 20 24 24 C 1.38105 * 119.98018 * 359.90971 * 23 22 21 25 25 C 1.38372 * 121.80564 * 17.00158 * 20 19 18 26 26 H 1.08996 * 109.47388 * 305.24186 * 1 2 3 27 27 H 1.09003 * 109.47002 * 65.23894 * 1 2 3 28 28 H 1.08998 * 109.47324 * 185.24051 * 1 2 3 29 29 H 1.08997 * 109.47511 * 239.99831 * 2 1 3 30 30 H 1.09003 * 109.47428 * 119.99665 * 2 1 3 31 31 H 0.96998 * 120.00137 * 179.97438 * 8 7 5 32 32 H 1.00898 * 110.99693 * 208.61433 * 13 3 2 33 33 H 1.09001 * 109.47093 * 297.45879 * 14 13 3 34 34 H 1.08998 * 109.47575 * 57.46282 * 14 13 3 35 35 H 0.96699 * 113.99829 * 180.02562 * 16 15 14 36 36 H 1.09008 * 109.70005 * 311.37869 * 17 15 14 37 37 H 1.08998 * 109.70304 * 71.94165 * 17 15 14 38 38 H 1.08992 * 109.68528 * 184.46368 * 18 17 15 39 39 H 1.09000 * 109.67955 * 305.01733 * 18 17 15 40 40 H 1.08001 * 119.88791 * 0.20526 * 21 20 19 41 41 H 1.07999 * 120.02572 * 179.97438 * 22 21 20 42 42 H 1.08001 * 120.00809 * 179.88515 * 23 22 21 43 43 H 1.08000 * 119.83897 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 -0.0180 5 6 1.5174 2.1601 -1.2179 6 1 0.8982 3.0375 -1.1034 7 6 1.8298 1.6963 -2.4782 8 7 2.5841 0.6281 -2.6175 9 14 1.1827 2.5861 -3.9877 10 1 1.6781 3.9860 -3.9876 11 1 1.6569 1.8927 -5.2123 12 1 -0.3022 2.5866 -3.9636 13 7 1.5701 2.1280 1.2114 14 6 2.4683 1.8690 2.3446 15 6 1.9827 2.6483 3.5685 16 8 0.6639 2.2194 3.9129 17 6 1.9637 4.1444 3.2453 18 6 1.7621 4.9172 4.5551 19 8 2.8998 4.6945 5.3893 20 6 3.3147 3.4135 5.5692 21 6 4.1691 3.1351 6.6316 22 6 4.6158 1.8472 6.8444 23 6 4.2145 0.8286 5.9996 24 6 3.3654 1.1009 4.9449 25 6 2.9118 2.3915 4.7278 26 1 -0.3634 0.5930 0.8393 27 1 -0.3633 0.4304 -0.9332 28 1 -0.3634 -1.0233 0.0939 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.8036 0.3016 -3.5042 32 1 1.4684 3.1187 1.0497 33 1 2.4703 0.8026 2.5702 34 1 3.4784 2.1881 2.0880 35 1 0.2912 2.6723 4.6817 36 1 2.9108 4.4340 2.7898 37 1 1.1446 4.3619 2.5598 38 1 1.6658 5.9817 4.3422 39 1 0.8632 4.5599 5.0575 40 1 4.4838 3.9299 7.2917 41 1 5.2792 1.6348 7.6697 42 1 4.5652 -0.1795 6.1643 43 1 3.0531 0.3036 4.2868 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154501.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:20 Heat of formation + Delta-G solvation = -82.526929 kcal Electronic energy + Delta-G solvation = -24140.983035 eV Core-core repulsion = 20764.248439 eV Total energy + Delta-G solvation = -3376.734597 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.06269 -38.87366 -38.47995 -37.43693 -34.63949 -33.41622 -32.18683 -31.72205 -31.04012 -28.96265 -26.96452 -25.19986 -25.01423 -24.02835 -22.69419 -20.98354 -20.76951 -19.03133 -18.38631 -18.28368 -17.27315 -17.21367 -16.82747 -16.05990 -15.85351 -15.55514 -15.25475 -15.02542 -14.89772 -14.70017 -14.45451 -14.13120 -13.78009 -13.72895 -13.33970 -13.06473 -12.84110 -12.77025 -12.72646 -12.53062 -12.42424 -12.37830 -12.01414 -11.95001 -11.68836 -11.33580 -11.08016 -10.94111 -10.77157 -10.53234 -9.89941 -9.20311 -8.98492 -8.09300 -6.21870 0.27983 0.43588 1.42673 1.44484 1.51456 2.28909 2.42664 2.73748 3.19130 3.25020 3.36187 3.55409 3.63987 3.81607 3.92891 4.11644 4.21514 4.38166 4.42872 4.48050 4.53778 4.57544 4.63099 4.67189 4.79576 4.81442 4.93314 4.98522 4.99863 5.06795 5.29062 5.30257 5.39089 5.50471 5.54868 5.58308 5.71303 5.79528 5.82291 5.88773 6.27008 6.40711 6.47857 6.75034 6.84713 7.02849 7.46873 8.95940 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023081 B = 0.004172 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.834739 B = 6709.352631 C = 7160.107572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.097 4.097 3 C 0.222 3.778 4 H -0.040 1.040 5 C -0.523 4.523 6 H 0.059 0.941 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.956 3.044 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.271 1.271 13 N -0.666 5.666 14 C 0.084 3.916 15 C 0.193 3.807 16 O -0.543 6.543 17 C -0.186 4.186 18 C 0.063 3.937 19 O -0.325 6.325 20 C 0.127 3.873 21 C -0.162 4.162 22 C -0.075 4.075 23 C -0.160 4.160 24 C -0.081 4.081 25 C -0.205 4.205 26 H 0.053 0.947 27 H 0.032 0.968 28 H 0.032 0.968 29 H 0.057 0.943 30 H 0.014 0.986 31 H 0.261 0.739 32 H 0.331 0.669 33 H 0.060 0.940 34 H 0.019 0.981 35 H 0.377 0.623 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.136 0.864 39 H 0.081 0.919 40 H 0.147 0.853 41 H 0.162 0.838 42 H 0.144 0.856 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.028 5.955 19.157 20.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.135 4.135 3 C 0.113 3.887 4 H -0.023 1.023 5 C -0.562 4.562 6 H 0.077 0.923 7 C -0.182 4.182 8 N -0.557 5.557 9 Si 0.782 3.218 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.297 5.297 14 C -0.046 4.046 15 C 0.152 3.848 16 O -0.349 6.349 17 C -0.224 4.224 18 C -0.011 4.011 19 O -0.239 6.239 20 C 0.081 3.919 21 C -0.181 4.181 22 C -0.093 4.093 23 C -0.178 4.178 24 C -0.099 4.099 25 C -0.207 4.207 26 H 0.072 0.928 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.033 0.967 31 H 0.070 0.930 32 H 0.149 0.851 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.225 0.775 36 H 0.090 0.910 37 H 0.120 0.880 38 H 0.154 0.846 39 H 0.099 0.901 40 H 0.165 0.835 41 H 0.179 0.821 42 H 0.162 0.838 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.827 5.130 18.732 19.440 hybrid contribution 0.515 0.816 -1.233 1.565 sum 1.342 5.946 17.500 18.531 Atomic orbital electron populations 1.21271 0.95926 0.98341 1.00657 1.21292 0.96366 0.97753 0.98114 1.18934 0.90595 0.92339 0.86817 1.02251 1.21380 1.31537 1.12068 0.91171 0.92329 1.25640 0.95243 0.95674 1.01663 1.70022 1.38009 1.24183 1.23461 0.85647 0.78855 0.78698 0.78646 1.19628 1.21232 1.19658 1.60566 1.49259 1.14932 1.04923 1.21824 0.92887 0.99539 0.90302 1.19674 0.81823 0.92972 0.90359 1.86776 1.29054 1.66846 1.52232 1.22934 1.04496 0.95101 0.99889 1.23197 0.86637 1.02978 0.88316 1.85968 1.47576 1.23375 1.67007 1.18964 0.95738 0.83095 0.94065 1.20911 1.01020 0.98684 0.97475 1.21346 0.97788 0.91128 0.99025 1.21364 0.99578 1.01006 0.95893 1.21146 0.95922 0.95416 0.97447 1.20435 1.05551 0.94874 0.99847 0.92767 0.94924 0.94911 0.92407 0.96686 0.93030 0.85074 0.92137 0.96329 0.77498 0.91004 0.88008 0.84614 0.90079 0.83485 0.82089 0.83776 0.86621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.85 9.47 71.98 0.68 -4.17 16 2 C -0.10 -4.89 5.57 30.59 0.17 -4.72 16 3 C 0.22 11.40 2.30 44.17 0.10 11.51 16 4 H -0.04 -2.32 7.77 -2.38 -0.02 -2.33 16 5 C -0.52 -28.41 7.38 25.60 0.19 -28.22 16 6 H 0.06 3.11 7.62 -2.91 -0.02 3.08 16 7 C 0.02 0.93 5.30 84.65 0.45 1.38 16 8 N -0.92 -53.11 11.33 21.45 0.24 -52.87 16 9 Si 0.96 43.45 29.54 68.60 2.03 45.47 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 13 N -0.67 -28.51 5.37 -495.42 -2.66 -31.17 16 14 C 0.08 3.20 4.23 86.31 0.37 3.56 16 15 C 0.19 5.74 0.76 -11.49 -0.01 5.73 16 16 O -0.54 -16.17 12.84 -148.98 -1.91 -18.08 16 17 C -0.19 -4.73 4.47 30.75 0.14 -4.59 16 18 C 0.06 1.20 6.98 72.12 0.50 1.71 16 19 O -0.33 -7.71 10.27 -91.82 -0.94 -8.65 16 20 C 0.13 3.20 6.47 22.52 0.15 3.35 16 21 C -0.16 -3.40 9.94 22.42 0.22 -3.18 16 22 C -0.08 -1.37 10.04 22.22 0.22 -1.15 16 23 C -0.16 -3.43 10.04 22.25 0.22 -3.21 16 24 C -0.08 -2.21 9.10 22.30 0.20 -2.00 16 25 C -0.21 -5.72 5.03 -19.75 -0.10 -5.82 16 26 H 0.05 2.45 7.48 -2.39 -0.02 2.44 16 27 H 0.03 1.60 7.38 -2.39 -0.02 1.58 16 28 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.06 3.25 6.10 -2.39 -0.01 3.24 16 30 H 0.01 0.70 7.45 -2.39 -0.02 0.69 16 31 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 32 H 0.33 13.65 6.44 -89.70 -0.58 13.07 16 33 H 0.06 2.43 5.86 -2.39 -0.01 2.41 16 34 H 0.02 0.75 8.00 -2.39 -0.02 0.73 16 35 H 0.38 8.06 7.67 -74.06 -0.57 7.49 16 36 H 0.07 2.00 8.11 -2.38 -0.02 1.98 16 37 H 0.10 2.59 7.15 -2.39 -0.02 2.57 16 38 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.08 1.27 6.85 -2.39 -0.02 1.25 16 40 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 41 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 42 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 43 H 0.12 3.38 6.47 -2.91 -0.02 3.36 16 Total: -1.00 -65.02 336.86 0.14 -64.87 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: -0.12 Total: 30.24 kcal Atomic # 6 Polarization: -33.33 SS G_CDS: 3.51 Total: -29.83 kcal Atomic # 7 Polarization: -81.62 SS G_CDS: -2.42 Total: -84.04 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -2.86 Total: -26.73 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -65.02 0.14 -64.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154501.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.652 kcal (2) G-P(sol) polarization free energy of solvation -65.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds