Wall clock time and date at job start Tue Mar 31 2020 06:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47593 * 2 1 4 4 H 1.08998 * 109.46566 * 54.32771 * 3 2 1 5 5 C 1.50693 * 109.47310 * 174.32918 * 3 2 1 6 6 H 1.08000 * 120.00383 * 120.00056 * 5 3 2 7 7 C 1.37880 * 120.00058 * 299.99802 * 5 3 2 8 8 N 1.31514 * 120.00207 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00069 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47269 * 270.00432 * 9 7 5 11 11 H 1.48504 * 109.46733 * 30.00176 * 9 7 5 12 12 H 1.48498 * 109.47224 * 150.00032 * 9 7 5 13 13 N 1.46902 * 109.47094 * 294.33089 * 3 2 1 14 14 C 1.46894 * 111.00142 * 156.89444 * 13 3 2 15 15 C 1.52994 * 109.47243 * 176.16787 * 14 13 3 16 16 O 1.42906 * 109.43860 * 299.93320 * 15 14 13 17 17 C 1.53075 * 109.44292 * 59.85582 * 15 14 13 18 18 C 1.53409 * 108.28046 * 168.32059 * 17 15 14 19 19 O 1.42823 * 108.39005 * 295.26412 * 18 17 15 20 20 C 1.35844 * 117.87669 * 49.06473 * 19 18 17 21 21 C 1.39151 * 118.50302 * 163.06299 * 20 19 18 22 22 C 1.37964 * 120.21951 * 179.77952 * 21 20 19 23 23 C 1.38292 * 119.96029 * 359.97438 * 22 21 20 24 24 C 1.38102 * 119.98107 * 0.09215 * 23 22 21 25 25 C 1.38370 * 121.81152 * 343.00424 * 20 19 18 26 26 H 1.08997 * 109.47505 * 63.69117 * 1 2 3 27 27 H 1.09002 * 109.47711 * 183.69252 * 1 2 3 28 28 H 1.09005 * 109.47315 * 303.69298 * 1 2 3 29 29 H 1.08999 * 109.47467 * 239.99721 * 2 1 3 30 30 H 1.09003 * 109.47203 * 120.00226 * 2 1 3 31 31 H 0.96998 * 120.00218 * 179.97438 * 8 7 5 32 32 H 1.00900 * 110.99552 * 32.93646 * 13 3 2 33 33 H 1.08998 * 109.47439 * 296.16753 * 14 13 3 34 34 H 1.09005 * 109.47037 * 56.16637 * 14 13 3 35 35 H 0.96695 * 114.00155 * 179.97438 * 16 15 14 36 36 H 1.08996 * 109.70182 * 288.02459 * 17 15 14 37 37 H 1.09000 * 109.69959 * 48.62843 * 17 15 14 38 38 H 1.08999 * 109.68061 * 54.99011 * 18 17 15 39 39 H 1.09002 * 109.67989 * 175.50158 * 18 17 15 40 40 H 1.08000 * 119.88704 * 359.75383 * 21 20 19 41 41 H 1.08000 * 120.01841 * 179.97438 * 22 21 20 42 42 H 1.07997 * 120.00932 * 180.02562 * 23 22 21 43 43 H 1.08002 * 119.84265 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5961 1.9847 0.8349 5 6 3.5404 1.4447 0.1404 6 1 4.1543 1.8862 -0.6307 7 6 4.1295 0.8831 1.2533 8 7 3.3821 0.3451 2.1922 9 14 5.9894 0.8865 1.4277 10 1 6.5462 -0.3472 0.8170 11 1 6.5490 2.0765 0.7375 12 1 6.3516 0.9333 2.8671 13 7 1.6653 2.0944 -1.2620 14 6 1.6285 3.5549 -1.1094 15 6 1.3293 4.2017 -2.4632 16 8 2.3519 3.8468 -3.3963 17 6 -0.0242 3.7048 -2.9773 18 6 -0.4345 4.5758 -4.1717 19 8 -0.6398 5.9105 -3.7066 20 6 0.3253 6.4680 -2.9300 21 6 0.3286 7.8497 -2.7645 22 6 1.2898 8.4527 -1.9797 23 6 2.2535 7.6828 -1.3544 24 6 2.2541 6.3115 -1.5174 25 6 1.2932 5.7008 -2.3062 26 1 -0.3634 0.4554 -0.9212 27 1 -0.3634 -1.0255 0.0662 28 1 -0.3634 0.5701 0.8551 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.7966 -0.0503 2.9749 32 1 0.7822 1.7439 -1.6017 33 1 0.8495 3.8263 -0.3970 34 1 2.5935 3.9065 -0.7441 35 1 2.2268 4.2222 -4.2786 36 1 0.0618 2.6651 -3.2930 37 1 -0.7707 3.7891 -2.1875 38 1 0.3561 4.5660 -4.9219 39 1 -1.3575 4.1918 -4.6061 40 1 -0.4235 8.4519 -3.2524 41 1 1.2896 9.5253 -1.8539 42 1 3.0060 8.1540 -0.7395 43 1 3.0075 5.7124 -1.0276 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154505.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:23 Heat of formation + Delta-G solvation = -62.094581 kcal Electronic energy + Delta-G solvation = -24167.707783 eV Core-core repulsion = 20791.859199 eV Total energy + Delta-G solvation = -3375.848584 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.01210 -37.55738 -37.48050 -35.78676 -32.91785 -31.88279 -30.91230 -30.66410 -30.02148 -27.25058 -25.57906 -24.11103 -23.18250 -22.51297 -21.29138 -19.67784 -19.50773 -17.96520 -17.22857 -16.37164 -16.16549 -16.12019 -15.01606 -14.85408 -14.68884 -14.22171 -13.97202 -13.69459 -13.51644 -13.42824 -12.86329 -12.70174 -12.46114 -12.06930 -12.01713 -11.89758 -11.62094 -11.48359 -11.15111 -11.07614 -11.05375 -10.83600 -10.57311 -10.18322 -9.92180 -9.74946 -9.65428 -9.49990 -9.04136 -8.87228 -8.30887 -8.21819 -7.16381 -5.93126 -3.96570 1.27853 1.43333 3.19338 3.35530 3.41658 3.46512 3.73460 4.46325 4.47759 4.53315 4.62541 4.69846 4.87778 5.02137 5.09061 5.23565 5.35265 5.37216 5.46435 5.51583 5.55977 5.68536 5.97295 6.01066 6.04756 6.14878 6.15509 6.23702 6.27154 6.40200 6.43898 6.56862 6.64088 6.77408 6.84478 7.09075 7.20538 7.37383 7.50117 7.79776 7.89312 7.96614 8.32211 8.42081 8.79450 9.12688 9.68293 11.12366 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017355 B = 0.004892 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.946214 B = 5722.434533 C = 6718.248814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.218 3.782 4 H -0.001 1.001 5 C -0.490 4.490 6 H 0.063 0.937 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.275 1.275 12 H -0.289 1.289 13 N -0.674 5.674 14 C 0.088 3.912 15 C 0.183 3.817 16 O -0.522 6.522 17 C -0.188 4.188 18 C 0.060 3.940 19 O -0.319 6.319 20 C 0.137 3.863 21 C -0.160 4.160 22 C -0.084 4.084 23 C -0.158 4.158 24 C -0.058 4.058 25 C -0.189 4.189 26 H 0.033 0.967 27 H 0.037 0.963 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.100 0.900 31 H 0.259 0.741 32 H 0.313 0.687 33 H 0.028 0.972 34 H 0.085 0.915 35 H 0.357 0.643 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.109 0.891 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.884 11.803 -10.376 17.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C 0.111 3.889 4 H 0.016 0.984 5 C -0.528 4.528 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.200 1.200 12 H -0.215 1.215 13 N -0.305 5.305 14 C -0.042 4.042 15 C 0.142 3.858 16 O -0.325 6.325 17 C -0.226 4.226 18 C -0.015 4.015 19 O -0.233 6.233 20 C 0.092 3.908 21 C -0.178 4.178 22 C -0.102 4.102 23 C -0.177 4.177 24 C -0.076 4.076 25 C -0.191 4.191 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.118 0.882 31 H 0.068 0.932 32 H 0.131 0.869 33 H 0.045 0.955 34 H 0.103 0.897 35 H 0.202 0.798 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.127 0.873 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.160 11.439 -9.974 16.780 hybrid contribution 0.013 0.205 0.301 0.364 sum -7.146 11.643 -9.673 16.739 Atomic orbital electron populations 1.21882 0.99722 0.99663 0.99446 1.21748 0.91107 1.00323 1.03119 1.19160 0.95621 0.90016 0.84072 0.98368 1.21228 0.91245 1.36277 1.04089 0.91889 1.24957 0.98030 0.95728 0.95869 1.69872 1.34617 1.39711 1.09633 0.86557 0.85918 0.78447 0.76828 1.20783 1.19983 1.21508 1.60619 1.34402 1.01811 1.33674 1.21768 1.01366 0.90594 0.90436 1.19990 0.86734 0.87140 0.91928 1.86899 1.48322 1.75005 1.22290 1.23003 0.98634 1.01900 0.99085 1.23006 1.02834 0.79863 0.95750 1.85969 1.42340 1.30583 1.64376 1.18762 0.88467 0.91968 0.91595 1.20531 1.01811 0.91505 1.03981 1.20933 0.93916 0.99690 0.95631 1.21091 1.00298 0.93910 1.02357 1.21167 0.96734 0.94652 0.95017 1.20537 0.98708 0.96870 1.02986 0.94765 0.94366 0.93928 0.93983 0.88216 0.93160 0.86936 0.95456 0.89654 0.79751 0.88093 0.89907 0.91893 0.87295 0.85517 0.85609 0.85785 0.84835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.68 37.15 0.36 -2.53 16 2 C -0.12 -2.94 5.37 -26.74 -0.14 -3.08 16 3 C 0.22 5.45 2.02 -68.87 -0.14 5.31 16 4 H 0.00 -0.03 7.88 -51.93 -0.41 -0.44 16 5 C -0.49 -13.62 8.46 -34.44 -0.29 -13.91 16 6 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -25.66 11.29 55.43 0.63 -25.03 16 9 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 N -0.67 -14.27 6.09 -107.96 -0.66 -14.93 16 14 C 0.09 1.70 4.19 -3.83 -0.02 1.68 16 15 C 0.18 2.85 0.76 -91.70 -0.07 2.78 16 16 O -0.52 -8.50 12.83 -35.23 -0.45 -8.95 16 17 C -0.19 -2.43 4.48 -26.48 -0.12 -2.55 16 18 C 0.06 0.64 6.98 37.37 0.26 0.90 16 19 O -0.32 -4.12 10.27 -19.25 -0.20 -4.32 16 20 C 0.14 1.89 6.47 -39.19 -0.25 1.63 16 21 C -0.16 -1.93 9.94 -39.34 -0.39 -2.33 16 22 C -0.08 -0.93 10.04 -39.66 -0.40 -1.33 16 23 C -0.16 -1.96 10.04 -39.61 -0.40 -2.36 16 24 C -0.06 -0.85 9.10 -39.53 -0.36 -1.20 16 25 C -0.19 -2.80 5.03 -104.44 -0.53 -3.32 16 26 H 0.03 0.58 6.58 -51.93 -0.34 0.24 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.10 2.65 5.94 -51.93 -0.31 2.34 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.31 5.98 5.08 -39.29 -0.20 5.78 16 33 H 0.03 0.53 8.13 -51.93 -0.42 0.11 16 34 H 0.09 1.82 6.23 -51.93 -0.32 1.50 16 35 H 0.36 4.37 7.67 45.56 0.35 4.72 16 36 H 0.10 1.29 7.32 -51.93 -0.38 0.91 16 37 H 0.08 1.11 8.10 -51.93 -0.42 0.68 16 38 H 0.06 0.59 6.85 -51.93 -0.36 0.23 16 39 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 41 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 42 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 43 H 0.13 2.08 6.46 -52.49 -0.34 1.74 16 LS Contribution 338.30 15.07 5.10 5.10 Total: -1.00 -30.70 338.30 -8.84 -39.54 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -5.66 Total: 10.75 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -2.58 Total: -18.90 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: -0.03 Total: -39.96 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -0.65 Total: -13.27 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.70 -8.84 -39.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154505.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.553 kcal (2) G-P(sol) polarization free energy of solvation -30.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds