Wall clock time and date at job start Tue Mar 31 2020 06:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47593 * 2 1 4 4 H 1.08998 * 109.46566 * 54.32771 * 3 2 1 5 5 C 1.50693 * 109.47310 * 174.32918 * 3 2 1 6 6 H 1.08000 * 120.00383 * 120.00056 * 5 3 2 7 7 C 1.37880 * 120.00058 * 299.99802 * 5 3 2 8 8 N 1.31514 * 120.00207 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00069 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47269 * 270.00432 * 9 7 5 11 11 H 1.48504 * 109.46733 * 30.00176 * 9 7 5 12 12 H 1.48498 * 109.47224 * 150.00032 * 9 7 5 13 13 N 1.46902 * 109.47094 * 294.33089 * 3 2 1 14 14 C 1.46894 * 111.00142 * 156.89444 * 13 3 2 15 15 C 1.52994 * 109.47243 * 176.16787 * 14 13 3 16 16 O 1.42906 * 109.43860 * 299.93320 * 15 14 13 17 17 C 1.53075 * 109.44292 * 59.85582 * 15 14 13 18 18 C 1.53409 * 108.28046 * 168.32059 * 17 15 14 19 19 O 1.42823 * 108.39005 * 295.26412 * 18 17 15 20 20 C 1.35844 * 117.87669 * 49.06473 * 19 18 17 21 21 C 1.39151 * 118.50302 * 163.06299 * 20 19 18 22 22 C 1.37964 * 120.21951 * 179.77952 * 21 20 19 23 23 C 1.38292 * 119.96029 * 359.97438 * 22 21 20 24 24 C 1.38102 * 119.98107 * 0.09215 * 23 22 21 25 25 C 1.38370 * 121.81152 * 343.00424 * 20 19 18 26 26 H 1.08997 * 109.47505 * 63.69117 * 1 2 3 27 27 H 1.09002 * 109.47711 * 183.69252 * 1 2 3 28 28 H 1.09005 * 109.47315 * 303.69298 * 1 2 3 29 29 H 1.08999 * 109.47467 * 239.99721 * 2 1 3 30 30 H 1.09003 * 109.47203 * 120.00226 * 2 1 3 31 31 H 0.96998 * 120.00218 * 179.97438 * 8 7 5 32 32 H 1.00900 * 110.99552 * 32.93646 * 13 3 2 33 33 H 1.08998 * 109.47439 * 296.16753 * 14 13 3 34 34 H 1.09005 * 109.47037 * 56.16637 * 14 13 3 35 35 H 0.96695 * 114.00155 * 179.97438 * 16 15 14 36 36 H 1.08996 * 109.70182 * 288.02459 * 17 15 14 37 37 H 1.09000 * 109.69959 * 48.62843 * 17 15 14 38 38 H 1.08999 * 109.68061 * 54.99011 * 18 17 15 39 39 H 1.09002 * 109.67989 * 175.50158 * 18 17 15 40 40 H 1.08000 * 119.88704 * 359.75383 * 21 20 19 41 41 H 1.08000 * 120.01841 * 179.97438 * 22 21 20 42 42 H 1.07997 * 120.00932 * 180.02562 * 23 22 21 43 43 H 1.08002 * 119.84265 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5961 1.9847 0.8349 5 6 3.5404 1.4447 0.1404 6 1 4.1543 1.8862 -0.6307 7 6 4.1295 0.8831 1.2533 8 7 3.3821 0.3451 2.1922 9 14 5.9894 0.8865 1.4277 10 1 6.5462 -0.3472 0.8170 11 1 6.5490 2.0765 0.7375 12 1 6.3516 0.9333 2.8671 13 7 1.6653 2.0944 -1.2620 14 6 1.6285 3.5549 -1.1094 15 6 1.3293 4.2017 -2.4632 16 8 2.3519 3.8468 -3.3963 17 6 -0.0242 3.7048 -2.9773 18 6 -0.4345 4.5758 -4.1717 19 8 -0.6398 5.9105 -3.7066 20 6 0.3253 6.4680 -2.9300 21 6 0.3286 7.8497 -2.7645 22 6 1.2898 8.4527 -1.9797 23 6 2.2535 7.6828 -1.3544 24 6 2.2541 6.3115 -1.5174 25 6 1.2932 5.7008 -2.3062 26 1 -0.3634 0.4554 -0.9212 27 1 -0.3634 -1.0255 0.0662 28 1 -0.3634 0.5701 0.8551 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.7966 -0.0503 2.9749 32 1 0.7822 1.7439 -1.6017 33 1 0.8495 3.8263 -0.3970 34 1 2.5935 3.9065 -0.7441 35 1 2.2268 4.2222 -4.2786 36 1 0.0618 2.6651 -3.2930 37 1 -0.7707 3.7891 -2.1875 38 1 0.3561 4.5660 -4.9219 39 1 -1.3575 4.1918 -4.6061 40 1 -0.4235 8.4519 -3.2524 41 1 1.2896 9.5253 -1.8539 42 1 3.0060 8.1540 -0.7395 43 1 3.0075 5.7124 -1.0276 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154505.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:23 Heat of formation + Delta-G solvation = -83.570304 kcal Electronic energy + Delta-G solvation = -24168.639040 eV Core-core repulsion = 20791.859199 eV Total energy + Delta-G solvation = -3376.779841 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.05332 -38.87459 -38.47690 -37.46458 -34.58356 -33.59133 -32.35160 -31.69721 -31.06478 -28.97990 -27.24086 -25.13783 -24.73739 -23.87221 -22.52552 -21.46989 -20.77435 -19.00180 -18.49356 -18.17647 -17.34435 -17.20964 -16.72352 -16.36306 -15.86518 -15.70220 -15.15274 -15.03050 -14.90339 -14.59993 -14.42616 -14.17799 -13.85983 -13.60857 -13.27623 -13.12780 -13.02382 -12.78698 -12.76763 -12.62126 -12.50897 -12.36690 -12.00311 -11.95575 -11.70612 -11.53471 -11.09466 -10.98006 -10.88883 -10.43821 -9.89992 -9.20399 -8.99758 -8.07939 -6.19423 0.27787 0.43099 1.39115 1.39924 1.50648 2.29172 2.42808 2.73598 3.16357 3.26921 3.35491 3.56318 3.65740 3.82681 3.94462 4.13506 4.21318 4.39909 4.42039 4.47255 4.50690 4.54386 4.56163 4.60770 4.66133 4.70087 4.86471 4.97784 5.00208 5.07016 5.08322 5.21873 5.29359 5.36021 5.50951 5.57262 5.59525 5.73542 5.81648 5.88278 6.34326 6.40823 6.45648 6.83652 6.93831 7.00459 7.49309 8.95300 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017355 B = 0.004892 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.946214 B = 5722.434533 C = 6718.248814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.119 4.119 3 C 0.224 3.776 4 H -0.036 1.036 5 C -0.509 4.509 6 H 0.044 0.956 7 C 0.011 3.989 8 N -0.919 5.919 9 Si 0.953 3.047 10 H -0.275 1.275 11 H -0.275 1.275 12 H -0.281 1.281 13 N -0.671 5.671 14 C 0.093 3.907 15 C 0.190 3.810 16 O -0.545 6.545 17 C -0.183 4.183 18 C 0.062 3.938 19 O -0.323 6.323 20 C 0.129 3.871 21 C -0.161 4.161 22 C -0.074 4.074 23 C -0.161 4.161 24 C -0.084 4.084 25 C -0.205 4.205 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.035 0.965 29 H 0.037 0.963 30 H 0.068 0.932 31 H 0.261 0.739 32 H 0.327 0.673 33 H 0.022 0.978 34 H 0.052 0.948 35 H 0.375 0.625 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.140 0.860 40 H 0.150 0.850 41 H 0.163 0.837 42 H 0.141 0.859 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.997 13.089 -11.974 19.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.158 4.158 3 C 0.116 3.884 4 H -0.018 1.018 5 C -0.548 4.548 6 H 0.062 0.938 7 C -0.187 4.187 8 N -0.559 5.559 9 Si 0.780 3.220 10 H -0.201 1.201 11 H -0.200 1.200 12 H -0.207 1.207 13 N -0.304 5.304 14 C -0.037 4.037 15 C 0.149 3.851 16 O -0.351 6.351 17 C -0.221 4.221 18 C -0.013 4.013 19 O -0.237 6.237 20 C 0.084 3.916 21 C -0.179 4.179 22 C -0.092 4.092 23 C -0.180 4.180 24 C -0.102 4.102 25 C -0.207 4.207 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.146 0.854 33 H 0.039 0.961 34 H 0.071 0.929 35 H 0.223 0.777 36 H 0.122 0.878 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.158 0.842 40 H 0.168 0.832 41 H 0.180 0.820 42 H 0.159 0.841 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.289 12.728 -11.596 19.110 hybrid contribution 0.370 -0.139 0.796 0.889 sum -7.920 12.589 -10.800 18.381 Atomic orbital electron populations 1.21749 0.96157 1.01304 1.00415 1.21565 0.94318 0.98668 1.01258 1.18939 0.94085 0.90866 0.84477 1.01825 1.21418 0.92829 1.36538 1.03999 0.93754 1.25648 1.02184 0.95339 0.95535 1.69992 1.36134 1.39942 1.09878 0.85629 0.80956 0.78428 0.77035 1.20062 1.20042 1.20666 1.60491 1.35362 1.02944 1.31576 1.21669 0.99435 0.89462 0.93165 1.19751 0.87873 0.87691 0.89784 1.86827 1.49118 1.75583 1.23604 1.22927 0.96602 1.02532 1.00064 1.23222 1.04957 0.78394 0.94679 1.85967 1.42089 1.31474 1.64159 1.18919 0.88207 0.92688 0.91780 1.20918 1.02291 0.91040 1.03657 1.21337 0.92495 1.01360 0.93975 1.21339 1.01149 0.92973 1.02491 1.21146 0.96985 0.95870 0.96215 1.20443 0.99711 0.96310 1.04239 0.92357 0.92152 0.94578 0.94448 0.91326 0.93031 0.85377 0.96053 0.92928 0.77690 0.87827 0.90456 0.90386 0.84200 0.83182 0.81983 0.84112 0.87342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.23 9.68 71.98 0.70 -4.54 16 2 C -0.12 -5.75 5.37 30.59 0.16 -5.59 16 3 C 0.22 11.66 2.02 44.17 0.09 11.75 16 4 H -0.04 -2.06 7.88 -2.39 -0.02 -2.08 16 5 C -0.51 -29.52 8.46 25.60 0.22 -29.31 16 6 H 0.04 2.68 7.81 -2.91 -0.02 2.65 16 7 C 0.01 0.63 5.29 84.66 0.45 1.08 16 8 N -0.92 -53.92 11.29 21.45 0.24 -53.68 16 9 Si 0.95 45.62 29.54 68.60 2.03 47.64 16 10 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 N -0.67 -29.32 6.09 -495.48 -3.02 -32.33 16 14 C 0.09 3.74 4.19 86.30 0.36 4.11 16 15 C 0.19 5.97 0.76 -11.49 -0.01 5.96 16 16 O -0.55 -17.91 12.83 -148.98 -1.91 -19.82 16 17 C -0.18 -4.51 4.48 30.76 0.14 -4.37 16 18 C 0.06 1.14 6.98 72.12 0.50 1.65 16 19 O -0.32 -7.54 10.27 -91.80 -0.94 -8.48 16 20 C 0.13 3.34 6.47 22.52 0.15 3.49 16 21 C -0.16 -3.45 9.94 22.42 0.22 -3.23 16 22 C -0.07 -1.45 10.04 22.22 0.22 -1.22 16 23 C -0.16 -3.85 10.04 22.25 0.22 -3.63 16 24 C -0.08 -2.55 9.10 22.30 0.20 -2.34 16 25 C -0.21 -6.08 5.03 -19.75 -0.10 -6.18 16 26 H 0.06 1.90 6.58 -2.39 -0.02 1.88 16 27 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 29 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.07 3.75 5.94 -2.39 -0.01 3.73 16 31 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 32 H 0.33 12.48 5.08 -89.69 -0.46 12.02 16 33 H 0.02 0.88 8.13 -2.39 -0.02 0.86 16 34 H 0.05 2.44 6.23 -2.38 -0.01 2.43 16 35 H 0.38 8.91 7.67 -74.06 -0.57 8.34 16 36 H 0.10 2.47 7.32 -2.39 -0.02 2.46 16 37 H 0.08 1.98 8.10 -2.39 -0.02 1.96 16 38 H 0.08 1.23 6.85 -2.39 -0.02 1.22 16 39 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 41 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 42 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 43 H 0.11 3.74 6.46 -2.91 -0.02 3.72 16 Total: -1.00 -68.80 338.30 -0.08 -68.88 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 0.00 Total: 30.17 kcal Atomic # 6 Polarization: -35.91 SS G_CDS: 3.53 Total: -32.38 kcal Atomic # 7 Polarization: -83.24 SS G_CDS: -2.78 Total: -86.02 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -2.85 Total: -28.30 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -68.80 -0.08 -68.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154505.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.690 kcal (2) G-P(sol) polarization free energy of solvation -68.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds