Wall clock time and date at job start Tue Mar 31 2020 06:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47014 * 2 1 4 4 H 1.09006 * 109.46796 * 185.17593 * 3 2 1 5 5 C 1.50696 * 109.47015 * 305.17312 * 3 2 1 6 6 H 1.08007 * 119.99992 * 120.00003 * 5 3 2 7 7 C 1.37874 * 120.00180 * 300.00162 * 5 3 2 8 8 N 1.31516 * 120.00025 * 179.97438 * 7 5 3 9 9 Si 1.86796 * 120.00052 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.47650 * 89.99743 * 9 7 5 11 11 H 1.48508 * 109.47293 * 209.99899 * 9 7 5 12 12 H 1.48505 * 109.47022 * 329.99527 * 9 7 5 13 13 N 1.46894 * 109.47197 * 65.17592 * 3 2 1 14 14 C 1.46898 * 111.00274 * 85.90364 * 13 3 2 15 15 C 1.50697 * 109.47386 * 174.80628 * 14 13 3 16 16 C 1.38241 * 120.00197 * 89.99977 * 15 14 13 17 17 C 1.38230 * 120.00053 * 179.97438 * 16 15 14 18 18 C 1.38230 * 120.00164 * 0.02562 * 17 16 15 19 19 C 1.50701 * 120.00178 * 179.97438 * 18 17 16 20 20 C 1.50706 * 109.46863 * 89.99804 * 19 18 17 21 21 O 1.20822 * 120.00107 * 359.97438 * 20 19 18 22 22 O 1.34235 * 119.99636 * 180.02562 * 20 19 18 23 23 C 1.45197 * 116.99445 * 180.02562 * 22 20 19 24 24 C 1.38236 * 120.00089 * 0.25181 * 18 17 16 25 25 C 1.38235 * 119.99894 * 359.46849 * 24 18 17 26 26 H 1.09007 * 109.46511 * 174.85584 * 1 2 3 27 27 H 1.08997 * 109.47235 * 294.85394 * 1 2 3 28 28 H 1.09002 * 109.46701 * 54.85867 * 1 2 3 29 29 H 1.08997 * 109.47435 * 239.99872 * 2 1 3 30 30 H 1.09001 * 109.46877 * 119.99545 * 2 1 3 31 31 H 0.97001 * 119.99697 * 180.02562 * 8 7 5 32 32 H 1.00903 * 111.00406 * 321.94561 * 13 3 2 33 33 H 1.09004 * 109.47269 * 54.80393 * 14 13 3 34 34 H 1.09005 * 109.47301 * 294.80439 * 14 13 3 35 35 H 1.08003 * 119.99792 * 359.97438 * 16 15 14 36 36 H 1.07998 * 119.99898 * 179.97438 * 17 16 15 37 37 H 1.08994 * 109.47410 * 209.99518 * 19 18 17 38 38 H 1.08997 * 109.47000 * 330.00351 * 19 18 17 39 39 H 1.09003 * 109.47257 * 299.99582 * 23 22 20 40 40 H 1.08997 * 109.47578 * 59.99827 * 23 22 20 41 41 H 1.09002 * 109.47026 * 179.97438 * 23 22 20 42 42 H 1.07997 * 120.00225 * 179.72990 * 24 18 17 43 43 H 1.07997 * 120.00205 * 180.27748 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0927 5 6 1.4358 2.1889 -1.1614 6 1 0.8266 3.0629 -0.9835 7 6 1.6606 1.7561 -2.4510 8 7 1.1328 2.4072 -3.4645 9 14 2.7135 0.2442 -2.7586 10 1 1.8522 -0.9655 -2.7674 11 1 3.3964 0.3751 -4.0709 12 1 3.7292 0.1209 -1.6822 13 7 1.6550 2.0980 1.2570 14 6 2.6438 1.8366 2.3114 15 6 2.2842 2.6254 3.5440 16 6 1.4574 2.0706 4.5030 17 6 1.1280 2.7940 5.6339 18 6 1.6249 4.0724 5.8057 19 6 1.2654 4.8613 7.0384 20 6 2.2798 4.5930 8.1201 21 8 3.2000 3.8383 7.9116 22 8 2.1605 5.1918 9.3155 23 6 3.1742 4.8871 10.3094 24 6 2.4472 4.6294 4.8442 25 6 2.7813 3.9039 3.7160 26 1 -0.3632 -1.0236 -0.0922 27 1 -0.3633 0.4319 0.9325 28 1 -0.3633 0.5915 -0.8404 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.2907 2.1025 -4.3718 32 1 0.7324 1.8103 1.5471 33 1 3.6329 2.1357 1.9643 34 1 2.6487 0.7729 2.5494 35 1 1.0687 1.0720 4.3685 36 1 0.4816 2.3607 6.3828 37 1 1.2606 5.9249 6.8005 38 1 0.2764 4.5621 7.3855 39 1 3.1703 3.8169 10.5162 40 1 4.1535 5.1805 9.9314 41 1 2.9600 5.4355 11.2268 42 1 2.8319 5.6298 4.9763 43 1 3.4273 4.3373 2.9668 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154715.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:39 Heat of formation + Delta-G solvation = -81.433388 kcal Electronic energy + Delta-G solvation = -22542.468318 eV Core-core repulsion = 19165.781141 eV Total energy + Delta-G solvation = -3376.687177 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.57603 -40.26475 -38.49667 -37.48118 -35.18555 -33.95917 -32.49959 -31.79669 -30.03345 -28.77467 -27.77595 -25.27213 -24.94936 -23.62586 -22.49837 -21.40518 -21.24909 -18.64263 -18.56968 -17.72011 -17.57961 -17.17738 -16.88921 -16.42449 -16.02476 -15.80919 -15.43536 -14.95736 -14.57287 -14.56141 -14.44539 -14.24692 -14.17572 -13.97827 -13.42008 -13.14804 -12.98913 -12.89023 -12.81402 -12.62441 -12.47304 -12.24429 -11.88394 -11.81460 -11.78217 -11.65652 -11.56832 -11.26733 -11.10563 -10.67489 -9.76286 -9.54716 -8.98916 -8.23267 -6.22607 0.33718 0.56876 1.20584 1.29862 1.35000 1.43829 1.84674 2.33991 2.87874 3.11379 3.60794 3.68268 3.89264 4.02966 4.08913 4.16059 4.20067 4.29383 4.32003 4.32682 4.34345 4.47722 4.54443 4.59700 4.64175 4.72119 4.73992 4.83137 4.90873 5.06413 5.12045 5.15979 5.21425 5.27916 5.40523 5.50293 5.59015 5.62603 5.72650 5.80246 6.03848 6.14361 6.70700 6.75755 6.75917 6.82833 7.40393 8.94115 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.038631 B = 0.002732 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.638466 B =10247.245596 C =10362.824989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.157 4.157 3 C 0.190 3.810 4 H 0.024 0.976 5 C -0.484 4.484 6 H 0.036 0.964 7 C 0.014 3.986 8 N -0.951 5.951 9 Si 0.941 3.059 10 H -0.266 1.266 11 H -0.301 1.301 12 H -0.253 1.253 13 N -0.676 5.676 14 C 0.096 3.904 15 C -0.080 4.080 16 C -0.123 4.123 17 C -0.108 4.108 18 C -0.091 4.091 19 C -0.065 4.065 20 C 0.462 3.538 21 O -0.537 6.537 22 O -0.363 6.363 23 C 0.028 3.972 24 C -0.111 4.111 25 C -0.116 4.116 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.043 0.957 29 H 0.038 0.962 30 H 0.064 0.936 31 H 0.263 0.737 32 H 0.338 0.662 33 H 0.066 0.934 34 H 0.041 0.959 35 H 0.131 0.869 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.132 0.868 42 H 0.137 0.863 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.677 2.211 27.437 27.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.196 4.196 3 C 0.080 3.920 4 H 0.042 0.958 5 C -0.523 4.523 6 H 0.054 0.946 7 C -0.183 4.183 8 N -0.592 5.592 9 Si 0.769 3.231 10 H -0.192 1.192 11 H -0.229 1.229 12 H -0.177 1.177 13 N -0.307 5.307 14 C -0.033 4.033 15 C -0.081 4.081 16 C -0.141 4.141 17 C -0.126 4.126 18 C -0.091 4.091 19 C -0.102 4.102 20 C 0.306 3.694 21 O -0.427 6.427 22 O -0.279 6.279 23 C -0.065 4.065 24 C -0.129 4.129 25 C -0.135 4.135 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.157 0.843 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.149 0.851 36 H 0.161 0.839 37 H 0.157 0.843 38 H 0.161 0.839 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.150 0.850 42 H 0.155 0.845 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.237 2.602 27.061 27.214 hybrid contribution 0.593 -1.538 -0.728 1.802 sum 1.830 1.064 26.333 26.418 Atomic orbital electron populations 1.21572 0.94906 1.00637 1.01910 1.22425 0.98094 0.99272 0.99817 1.19496 0.94926 0.89317 0.88262 0.95828 1.21079 1.29835 1.11397 0.89947 0.94602 1.25657 0.96994 0.99745 0.95886 1.70037 1.47328 1.42530 0.99328 0.85971 0.79880 0.80467 0.76755 1.19231 1.22944 1.17746 1.60493 1.04884 1.62878 1.02448 1.20909 0.96322 0.96665 0.89369 1.19922 0.97719 0.95238 0.95209 1.21184 0.98041 1.00658 0.94226 1.21202 1.00003 0.93765 0.97596 1.19477 0.98918 0.95215 0.95498 1.20398 0.98236 1.03989 0.87597 1.24178 0.85510 0.76592 0.83073 1.90706 1.34675 1.35850 1.81422 1.86503 1.52430 1.65674 1.23324 1.23507 0.90127 1.02489 0.90371 1.21193 0.97527 1.00475 0.93688 1.21127 1.00377 0.94157 0.97811 0.92573 0.92160 0.93753 0.94414 0.91766 0.92776 0.84272 0.91598 0.94137 0.85132 0.83916 0.84293 0.83924 0.92237 0.92375 0.84994 0.84547 0.86473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.07 9.40 71.98 0.68 -4.39 16 2 C -0.16 -6.34 5.22 30.60 0.16 -6.19 16 3 C 0.19 8.72 1.93 44.17 0.09 8.81 16 4 H 0.02 1.14 6.76 -2.38 -0.02 1.12 16 5 C -0.48 -27.43 7.83 25.60 0.20 -27.23 16 6 H 0.04 2.31 8.06 -2.91 -0.02 2.28 16 7 C 0.01 0.80 5.42 84.65 0.46 1.25 16 8 N -0.95 -59.74 13.96 21.45 0.30 -59.44 16 9 Si 0.94 45.15 24.32 68.60 1.67 46.82 16 10 H -0.27 -12.12 6.92 99.48 0.69 -11.44 16 11 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 12 H -0.25 -11.34 6.53 99.48 0.65 -10.69 16 13 N -0.68 -27.16 6.19 -499.47 -3.09 -30.25 16 14 C 0.10 3.22 5.63 85.56 0.48 3.71 16 15 C -0.08 -2.43 5.44 -19.86 -0.11 -2.53 16 16 C -0.12 -3.17 9.70 22.27 0.22 -2.95 16 17 C -0.11 -2.38 9.70 22.27 0.22 -2.16 16 18 C -0.09 -1.93 4.37 -19.87 -0.09 -2.02 16 19 C -0.07 -0.90 5.94 29.10 0.17 -0.72 16 20 C 0.46 8.69 7.95 71.24 0.57 9.26 16 21 O -0.54 -14.41 15.78 21.97 0.35 -14.06 16 22 O -0.36 -5.66 10.57 -51.47 -0.54 -6.20 16 23 C 0.03 0.32 10.56 113.37 1.20 1.52 16 24 C -0.11 -2.70 9.70 22.27 0.22 -2.48 16 25 C -0.12 -3.40 9.70 22.27 0.22 -3.19 16 26 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 27 H 0.06 2.03 6.63 -2.39 -0.02 2.01 16 28 H 0.04 2.02 6.85 -2.39 -0.02 2.00 16 29 H 0.04 1.61 3.42 -2.39 -0.01 1.60 16 30 H 0.06 2.21 7.50 -2.39 -0.02 2.19 16 31 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 32 H 0.34 12.80 6.69 -89.69 -0.60 12.20 16 33 H 0.07 2.29 7.87 -2.38 -0.02 2.28 16 34 H 0.04 1.25 7.48 -2.38 -0.02 1.23 16 35 H 0.13 2.96 8.06 -2.91 -0.02 2.93 16 36 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 37 H 0.14 1.26 8.08 -2.39 -0.02 1.24 16 38 H 0.14 1.16 8.09 -2.39 -0.02 1.15 16 39 H 0.06 0.72 8.13 -2.39 -0.02 0.70 16 40 H 0.06 0.72 8.13 -2.39 -0.02 0.70 16 41 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.14 2.68 8.06 -2.91 -0.02 2.65 16 43 H 0.12 3.49 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -72.85 350.41 3.68 -69.18 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 0.33 Total: 23.28 kcal Atomic # 6 Polarization: -33.99 SS G_CDS: 4.67 Total: -29.32 kcal Atomic # 7 Polarization: -86.90 SS G_CDS: -2.79 Total: -89.69 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.20 Total: -20.26 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.67 Total: 46.82 kcal Total: -72.85 3.68 -69.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154715.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.257 kcal (2) G-P(sol) polarization free energy of solvation -72.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds