Wall clock time and date at job start Tue Mar 31 2020 06:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46651 * 2 1 4 4 H 1.08992 * 109.47149 * 305.76539 * 3 2 1 5 5 C 1.50699 * 109.46826 * 185.76598 * 3 2 1 6 6 H 1.08000 * 120.00315 * 274.49016 * 5 3 2 7 7 C 1.37877 * 120.00016 * 94.76390 * 5 3 2 8 8 N 1.31515 * 120.00485 * 185.58384 * 7 5 3 9 9 Si 1.86802 * 119.99838 * 5.57967 * 7 5 3 10 10 H 1.48501 * 109.47264 * 86.66636 * 9 7 5 11 11 H 1.48500 * 109.47336 * 206.66427 * 9 7 5 12 12 H 1.48498 * 109.47408 * 326.66916 * 9 7 5 13 13 N 1.46896 * 109.46949 * 65.77218 * 3 2 1 14 14 C 1.46901 * 110.99874 * 248.69275 * 13 3 2 15 15 C 1.50701 * 109.47491 * 183.83347 * 14 13 3 16 16 C 1.38236 * 119.99338 * 269.72409 * 15 14 13 17 17 C 1.38235 * 119.99440 * 179.74212 * 16 15 14 18 18 C 1.38238 * 120.00240 * 0.53177 * 17 16 15 19 19 C 1.50695 * 120.00671 * 179.76897 * 18 17 16 20 20 C 1.50701 * 109.47273 * 269.98028 * 19 18 17 21 21 O 1.20826 * 119.99721 * 359.97438 * 20 19 18 22 22 O 1.34221 * 120.00322 * 179.97438 * 20 19 18 23 23 C 1.45201 * 117.00246 * 179.97438 * 22 20 19 24 24 C 1.38246 * 119.99677 * 359.74597 * 18 17 16 25 25 C 1.38227 * 120.00143 * 89.99686 * 15 14 13 26 26 H 1.09007 * 109.46596 * 175.28439 * 1 2 3 27 27 H 1.08997 * 109.47141 * 295.27745 * 1 2 3 28 28 H 1.08995 * 109.47497 * 55.28430 * 1 2 3 29 29 H 1.08998 * 109.46975 * 240.00456 * 2 1 3 30 30 H 1.08997 * 109.47633 * 120.00060 * 2 1 3 31 31 H 0.97003 * 120.00302 * 180.02562 * 8 7 5 32 32 H 1.00897 * 111.00538 * 12.64132 * 13 3 2 33 33 H 1.09001 * 109.47269 * 303.83480 * 14 13 3 34 34 H 1.09002 * 109.47224 * 63.82617 * 14 13 3 35 35 H 1.07990 * 120.00397 * 0.02562 * 16 15 14 36 36 H 1.08002 * 120.00579 * 180.29813 * 17 16 15 37 37 H 1.09005 * 109.46912 * 29.97720 * 19 18 17 38 38 H 1.09000 * 109.47522 * 149.97592 * 19 18 17 39 39 H 1.09006 * 109.46763 * 300.00134 * 23 22 20 40 40 H 1.08999 * 109.47084 * 59.99869 * 23 22 20 41 41 H 1.08999 * 109.47429 * 180.02562 * 23 22 20 42 42 H 1.07994 * 119.99856 * 180.02562 * 24 18 17 43 43 H 1.08004 * 119.99782 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5947 1.9853 -0.8338 5 6 3.5401 1.4451 -0.1427 6 1 4.1660 1.3415 0.7313 7 6 4.1139 1.5851 -1.3886 8 7 5.4171 1.4775 -1.5284 9 14 3.0400 1.9277 -2.8782 10 1 2.8259 3.3914 -3.0081 11 1 3.7104 1.4151 -4.1002 12 1 1.7299 1.2489 -2.7107 13 7 1.6672 2.0936 1.2630 14 6 0.6560 3.1355 1.0398 15 6 0.3683 3.8430 2.3389 16 6 -0.6344 3.3804 3.1705 17 6 -0.8947 4.0262 4.3647 18 6 -0.1597 5.1411 4.7221 19 6 -0.4469 5.8483 6.0215 20 6 -1.4841 6.9174 5.7930 21 8 -1.9427 7.0879 4.6882 22 8 -1.8986 7.6802 6.8167 23 6 -2.8993 8.6905 6.5231 24 6 0.8392 5.6071 3.8877 25 6 1.1033 4.9578 2.6963 26 1 -0.3633 -1.0243 -0.0845 27 1 -0.3633 0.4388 0.9292 28 1 -0.3634 0.5852 -0.8447 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.8208 1.5764 -2.4049 32 1 1.3454 1.4162 1.9379 33 1 1.0293 3.8538 0.3098 34 1 -0.2597 2.6786 0.6643 35 1 -1.2113 2.5119 2.8894 36 1 -1.6748 3.6621 5.0167 37 1 -0.8203 5.1299 6.7513 38 1 0.4689 6.3049 6.3969 39 1 -2.5072 9.3851 5.7802 40 1 -3.7969 8.2104 6.1335 41 1 -3.1446 9.2347 7.4351 42 1 1.4137 6.4778 4.1671 43 1 1.8835 5.3220 2.0442 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154716.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:43 Heat of formation + Delta-G solvation = -69.125581 kcal Electronic energy + Delta-G solvation = -22555.523280 eV Core-core repulsion = 19179.369809 eV Total energy + Delta-G solvation = -3376.153471 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.75926 -39.22074 -36.90193 -36.47627 -33.73673 -32.13534 -31.19314 -30.76621 -29.04838 -27.75861 -26.63511 -23.99854 -22.60290 -22.47771 -21.47635 -20.33379 -19.71958 -17.86543 -17.01595 -16.83838 -16.81375 -15.81090 -15.43362 -15.00314 -14.79918 -14.27194 -14.07862 -13.87075 -13.69946 -13.24323 -13.02890 -12.88942 -12.66983 -12.40945 -12.37537 -12.05240 -11.91751 -11.79234 -11.54739 -11.12677 -11.08482 -10.90455 -10.79970 -10.70330 -10.49147 -10.39617 -9.84867 -9.71880 -9.23432 -8.72126 -8.51856 -8.42195 -7.27362 -6.01969 -3.97734 1.36747 1.61301 1.99667 2.55460 3.28635 3.36927 3.37751 3.92953 4.43913 4.44007 4.72656 4.76228 4.79315 4.87274 5.04457 5.09841 5.15095 5.21446 5.23893 5.25394 5.49759 5.66074 5.69308 5.76437 5.83905 5.92302 5.98910 6.01562 6.12291 6.24489 6.28589 6.46667 6.51484 6.55203 6.63114 6.75133 6.85843 6.94163 7.15257 7.17525 7.52885 7.78294 7.94596 8.38388 8.74009 9.10945 9.61738 11.11806 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027506 B = 0.002973 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.721464 B = 9415.363046 C = 9755.056663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.140 4.140 3 C 0.184 3.816 4 H 0.028 0.972 5 C -0.485 4.485 6 H 0.078 0.922 7 C 0.068 3.932 8 N -0.901 5.901 9 Si 0.870 3.130 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.267 1.267 13 N -0.666 5.666 14 C 0.092 3.908 15 C -0.058 4.058 16 C -0.117 4.117 17 C -0.104 4.104 18 C -0.094 4.094 19 C -0.068 4.068 20 C 0.458 3.542 21 O -0.495 6.495 22 O -0.364 6.364 23 C 0.035 3.965 24 C -0.103 4.103 25 C -0.095 4.095 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.044 0.956 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.262 0.738 32 H 0.323 0.677 33 H 0.075 0.925 34 H 0.027 0.973 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.100 0.900 42 H 0.118 0.882 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.948 9.510 15.621 24.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.180 4.180 3 C 0.076 3.924 4 H 0.046 0.954 5 C -0.524 4.524 6 H 0.096 0.904 7 C -0.133 4.133 8 N -0.540 5.540 9 Si 0.698 3.302 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.192 1.192 13 N -0.297 5.297 14 C -0.037 4.037 15 C -0.058 4.058 16 C -0.135 4.135 17 C -0.123 4.123 18 C -0.094 4.094 19 C -0.105 4.105 20 C 0.300 3.700 21 O -0.380 6.380 22 O -0.281 6.281 23 C -0.058 4.058 24 C -0.121 4.121 25 C -0.113 4.113 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.140 0.860 33 H 0.094 0.906 34 H 0.045 0.955 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.118 0.882 42 H 0.136 0.864 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.424 10.032 15.101 23.803 hybrid contribution -1.434 -0.181 -1.187 1.870 sum -16.859 9.852 13.914 23.977 Atomic orbital electron populations 1.21946 0.98585 1.00311 1.00474 1.22335 0.92465 1.01249 1.01941 1.19757 0.96757 0.88804 0.87044 0.95418 1.20963 0.89025 1.47998 0.94415 0.90413 1.25005 0.94731 0.95173 0.98441 1.69898 1.09759 1.50611 1.23717 0.86981 0.81174 0.79005 0.83086 1.20315 1.21533 1.19157 1.60938 1.39803 1.15907 1.13030 1.21032 0.94202 0.95455 0.93013 1.20047 0.94291 0.94967 0.96499 1.20974 0.98251 0.99943 0.94369 1.20822 0.98878 0.95666 0.96885 1.19100 0.98243 0.96790 0.95305 1.20276 0.97496 0.94866 0.97859 1.23858 0.81958 0.81514 0.82672 1.90714 1.54759 1.67458 1.25115 1.86502 1.55542 1.46024 1.40041 1.23249 0.90159 0.89623 1.02806 1.20929 0.97374 0.99363 0.94420 1.21064 0.98757 0.95189 0.96329 0.93803 0.93755 0.93673 0.92087 0.92376 0.92773 0.85975 0.90615 0.95480 0.86392 0.86627 0.86913 0.86807 0.91901 0.91945 0.88164 0.86418 0.85484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 9.21 37.16 0.34 -2.26 16 2 C -0.14 -2.86 5.19 -26.73 -0.14 -3.00 16 3 C 0.18 4.23 1.83 -68.86 -0.13 4.10 16 4 H 0.03 0.66 4.62 -51.93 -0.24 0.42 16 5 C -0.49 -13.56 9.19 -34.44 -0.32 -13.87 16 6 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 7 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 8 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 9 Si 0.87 21.46 27.06 -169.99 -4.60 16.86 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.27 -6.25 6.72 56.52 0.38 -5.87 16 13 N -0.67 -13.49 6.07 -109.22 -0.66 -14.15 16 14 C 0.09 1.63 5.38 -4.97 -0.03 1.61 16 15 C -0.06 -0.91 5.43 -104.63 -0.57 -1.48 16 16 C -0.12 -1.63 9.70 -39.58 -0.38 -2.01 16 17 C -0.10 -1.30 9.70 -39.58 -0.38 -1.69 16 18 C -0.09 -1.14 4.37 -104.62 -0.46 -1.60 16 19 C -0.07 -0.59 5.94 -29.04 -0.17 -0.77 16 20 C 0.46 4.96 7.95 36.01 0.29 5.25 16 21 O -0.49 -7.12 15.78 -18.75 -0.30 -7.41 16 22 O -0.36 -3.38 10.56 -39.23 -0.41 -3.80 16 23 C 0.04 0.24 10.56 101.05 1.07 1.31 16 24 C -0.10 -1.37 9.70 -39.58 -0.38 -1.75 16 25 C -0.09 -1.46 9.70 -39.59 -0.38 -1.85 16 26 H 0.04 0.65 8.14 -51.92 -0.42 0.22 16 27 H 0.04 0.67 7.00 -51.93 -0.36 0.31 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.06 1.16 8.07 -51.93 -0.42 0.74 16 31 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 32 H 0.32 6.02 7.57 -39.29 -0.30 5.73 16 33 H 0.08 1.43 8.02 -51.93 -0.42 1.01 16 34 H 0.03 0.45 7.18 -51.93 -0.37 0.08 16 35 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 36 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.11 0.73 8.09 -51.93 -0.42 0.31 16 38 H 0.11 0.77 8.09 -51.93 -0.42 0.35 16 39 H 0.06 0.45 8.13 -51.93 -0.42 0.02 16 40 H 0.06 0.44 8.13 -51.93 -0.42 0.01 16 41 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 43 H 0.13 1.97 8.06 -52.48 -0.42 1.55 16 LS Contribution 359.76 15.07 5.42 5.42 Total: -1.00 -32.93 359.76 -8.28 -41.21 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -6.76 Total: 4.86 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -1.74 Total: -16.15 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: 0.11 Total: -40.98 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -0.71 Total: -11.21 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.60 Total: 16.86 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.93 -8.28 -41.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154716.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.916 kcal (2) G-P(sol) polarization free energy of solvation -32.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds