Wall clock time and date at job start Tue Mar 31 2020 06:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46651 * 2 1 4 4 H 1.08992 * 109.47149 * 305.76539 * 3 2 1 5 5 C 1.50699 * 109.46826 * 185.76598 * 3 2 1 6 6 H 1.08000 * 120.00315 * 274.49016 * 5 3 2 7 7 C 1.37877 * 120.00016 * 94.76390 * 5 3 2 8 8 N 1.31515 * 120.00485 * 185.58384 * 7 5 3 9 9 Si 1.86802 * 119.99838 * 5.57967 * 7 5 3 10 10 H 1.48501 * 109.47264 * 86.66636 * 9 7 5 11 11 H 1.48500 * 109.47336 * 206.66427 * 9 7 5 12 12 H 1.48498 * 109.47408 * 326.66916 * 9 7 5 13 13 N 1.46896 * 109.46949 * 65.77218 * 3 2 1 14 14 C 1.46901 * 110.99874 * 248.69275 * 13 3 2 15 15 C 1.50701 * 109.47491 * 183.83347 * 14 13 3 16 16 C 1.38236 * 119.99338 * 269.72409 * 15 14 13 17 17 C 1.38235 * 119.99440 * 179.74212 * 16 15 14 18 18 C 1.38238 * 120.00240 * 0.53177 * 17 16 15 19 19 C 1.50695 * 120.00671 * 179.76897 * 18 17 16 20 20 C 1.50701 * 109.47273 * 269.98028 * 19 18 17 21 21 O 1.20826 * 119.99721 * 359.97438 * 20 19 18 22 22 O 1.34221 * 120.00322 * 179.97438 * 20 19 18 23 23 C 1.45201 * 117.00246 * 179.97438 * 22 20 19 24 24 C 1.38246 * 119.99677 * 359.74597 * 18 17 16 25 25 C 1.38227 * 120.00143 * 89.99686 * 15 14 13 26 26 H 1.09007 * 109.46596 * 175.28439 * 1 2 3 27 27 H 1.08997 * 109.47141 * 295.27745 * 1 2 3 28 28 H 1.08995 * 109.47497 * 55.28430 * 1 2 3 29 29 H 1.08998 * 109.46975 * 240.00456 * 2 1 3 30 30 H 1.08997 * 109.47633 * 120.00060 * 2 1 3 31 31 H 0.97003 * 120.00302 * 180.02562 * 8 7 5 32 32 H 1.00897 * 111.00538 * 12.64132 * 13 3 2 33 33 H 1.09001 * 109.47269 * 303.83480 * 14 13 3 34 34 H 1.09002 * 109.47224 * 63.82617 * 14 13 3 35 35 H 1.07990 * 120.00397 * 0.02562 * 16 15 14 36 36 H 1.08002 * 120.00579 * 180.29813 * 17 16 15 37 37 H 1.09005 * 109.46912 * 29.97720 * 19 18 17 38 38 H 1.09000 * 109.47522 * 149.97592 * 19 18 17 39 39 H 1.09006 * 109.46763 * 300.00134 * 23 22 20 40 40 H 1.08999 * 109.47084 * 59.99869 * 23 22 20 41 41 H 1.08999 * 109.47429 * 180.02562 * 23 22 20 42 42 H 1.07994 * 119.99856 * 180.02562 * 24 18 17 43 43 H 1.08004 * 119.99782 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5947 1.9853 -0.8338 5 6 3.5401 1.4451 -0.1427 6 1 4.1660 1.3415 0.7313 7 6 4.1139 1.5851 -1.3886 8 7 5.4171 1.4775 -1.5284 9 14 3.0400 1.9277 -2.8782 10 1 2.8259 3.3914 -3.0081 11 1 3.7104 1.4151 -4.1002 12 1 1.7299 1.2489 -2.7107 13 7 1.6672 2.0936 1.2630 14 6 0.6560 3.1355 1.0398 15 6 0.3683 3.8430 2.3389 16 6 -0.6344 3.3804 3.1705 17 6 -0.8947 4.0262 4.3647 18 6 -0.1597 5.1411 4.7221 19 6 -0.4469 5.8483 6.0215 20 6 -1.4841 6.9174 5.7930 21 8 -1.9427 7.0879 4.6882 22 8 -1.8986 7.6802 6.8167 23 6 -2.8993 8.6905 6.5231 24 6 0.8392 5.6071 3.8877 25 6 1.1033 4.9578 2.6963 26 1 -0.3633 -1.0243 -0.0845 27 1 -0.3633 0.4388 0.9292 28 1 -0.3634 0.5852 -0.8447 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.8208 1.5764 -2.4049 32 1 1.3454 1.4162 1.9379 33 1 1.0293 3.8538 0.3098 34 1 -0.2597 2.6786 0.6643 35 1 -1.2113 2.5119 2.8894 36 1 -1.6748 3.6621 5.0167 37 1 -0.8203 5.1299 6.7513 38 1 0.4689 6.3049 6.3969 39 1 -2.5072 9.3851 5.7802 40 1 -3.7969 8.2104 6.1335 41 1 -3.1446 9.2347 7.4351 42 1 1.4137 6.4778 4.1671 43 1 1.8835 5.3220 2.0442 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154716.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:42 Heat of formation + Delta-G solvation = -89.693566 kcal Electronic energy + Delta-G solvation = -22556.415175 eV Core-core repulsion = 19179.369809 eV Total energy + Delta-G solvation = -3377.045366 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.57874 -40.26312 -38.32998 -37.46785 -35.02648 -34.10226 -32.48206 -31.80017 -30.20725 -29.01420 -27.80920 -25.39870 -24.08344 -23.61704 -22.44677 -21.58490 -21.22456 -19.04638 -18.64264 -17.72584 -17.58479 -16.98626 -16.71772 -16.41428 -15.99373 -15.91978 -15.52737 -14.74020 -14.60453 -14.48629 -14.38510 -14.24262 -14.06339 -13.58787 -13.54357 -13.27306 -13.10624 -12.90167 -12.80085 -12.77757 -12.47792 -12.06321 -12.01554 -11.80919 -11.78254 -11.67586 -11.57082 -11.54093 -11.21989 -10.65167 -9.76638 -9.54552 -8.90163 -8.24512 -6.24575 0.33534 0.56499 1.20521 1.32416 1.33195 1.43135 1.84504 2.34783 2.87061 3.08527 3.61255 3.74188 3.89225 4.03864 4.09635 4.15515 4.21113 4.31602 4.32541 4.34210 4.39025 4.48365 4.54507 4.59472 4.63979 4.71938 4.74051 4.77317 4.84769 5.09079 5.11920 5.17230 5.21170 5.25123 5.40464 5.48557 5.51704 5.62274 5.74661 5.80666 6.06577 6.14648 6.68405 6.75712 6.78412 6.89455 7.38977 8.93353 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027506 B = 0.002973 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.721464 B = 9415.363046 C = 9755.056663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 C 0.189 3.811 4 H 0.025 0.975 5 C -0.489 4.489 6 H 0.029 0.971 7 C 0.007 3.993 8 N -0.953 5.953 9 Si 0.936 3.064 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.243 1.243 13 N -0.679 5.679 14 C 0.099 3.901 15 C -0.080 4.080 16 C -0.120 4.120 17 C -0.106 4.106 18 C -0.090 4.090 19 C -0.065 4.065 20 C 0.462 3.538 21 O -0.538 6.538 22 O -0.362 6.362 23 C 0.028 3.972 24 C -0.111 4.111 25 C -0.119 4.119 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.263 0.737 32 H 0.334 0.666 33 H 0.055 0.945 34 H 0.044 0.956 35 H 0.134 0.866 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.138 0.862 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.102 9.741 17.275 27.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.177 4.177 3 C 0.080 3.920 4 H 0.043 0.957 5 C -0.528 4.528 6 H 0.048 0.952 7 C -0.189 4.189 8 N -0.594 5.594 9 Si 0.761 3.239 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.166 1.166 13 N -0.310 5.310 14 C -0.030 4.030 15 C -0.080 4.080 16 C -0.138 4.138 17 C -0.124 4.124 18 C -0.091 4.091 19 C -0.102 4.102 20 C 0.306 3.694 21 O -0.427 6.427 22 O -0.279 6.279 23 C -0.065 4.065 24 C -0.129 4.129 25 C -0.138 4.138 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.152 0.848 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.152 0.848 36 H 0.163 0.837 37 H 0.163 0.837 38 H 0.156 0.844 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -18.605 10.266 16.800 27.088 hybrid contribution -0.439 -0.179 -1.501 1.574 sum -19.044 10.087 15.299 26.429 Atomic orbital electron populations 1.21841 0.95007 1.02112 1.01392 1.22170 0.95589 0.98738 1.01195 1.19560 0.93394 0.90790 0.88234 0.95696 1.21265 0.91707 1.47016 0.92789 0.95238 1.25853 0.95977 0.95232 1.01880 1.70061 1.11954 1.52832 1.24575 0.85907 0.80186 0.79066 0.78786 1.19907 1.21325 1.16618 1.60623 1.41884 1.16490 1.12038 1.20933 0.93768 0.94279 0.94015 1.19929 0.96023 0.95673 0.96416 1.21175 0.97626 1.00472 0.94573 1.21220 0.99179 0.95377 0.96633 1.19476 0.96924 0.96482 0.96194 1.20397 0.98213 0.94935 0.96633 1.24185 0.81555 0.81462 0.82171 1.90709 1.56457 1.68815 1.26726 1.86498 1.55865 1.46158 1.39375 1.23507 0.89399 0.89141 1.04442 1.21170 0.98110 0.99753 0.93841 1.21111 0.99099 0.96096 0.97455 0.91413 0.92088 0.93677 0.93706 0.92447 0.92775 0.84761 0.92676 0.93802 0.84791 0.83665 0.83748 0.84374 0.92451 0.92200 0.84972 0.84771 0.87114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.41 9.21 71.98 0.66 -3.75 16 2 C -0.14 -5.45 5.19 30.60 0.16 -5.29 16 3 C 0.19 8.68 1.83 44.17 0.08 8.76 16 4 H 0.03 1.17 4.62 -2.39 -0.01 1.15 16 5 C -0.49 -28.38 9.19 25.60 0.24 -28.15 16 6 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 7 C 0.01 0.40 5.47 84.65 0.46 0.86 16 8 N -0.95 -60.85 13.96 21.45 0.30 -60.55 16 9 Si 0.94 44.91 27.06 68.60 1.86 46.77 16 10 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 12 H -0.24 -10.60 6.72 99.48 0.67 -9.93 16 13 N -0.68 -27.55 6.07 -499.46 -3.03 -30.58 16 14 C 0.10 3.47 5.38 85.56 0.46 3.93 16 15 C -0.08 -2.50 5.43 -19.87 -0.11 -2.60 16 16 C -0.12 -3.09 9.70 22.27 0.22 -2.87 16 17 C -0.11 -2.34 9.70 22.27 0.22 -2.12 16 18 C -0.09 -1.97 4.37 -19.86 -0.09 -2.05 16 19 C -0.07 -0.91 5.94 29.10 0.17 -0.74 16 20 C 0.46 8.86 7.95 71.24 0.57 9.43 16 21 O -0.54 -14.71 15.78 21.96 0.35 -14.36 16 22 O -0.36 -5.76 10.56 -51.33 -0.54 -6.30 16 23 C 0.03 0.33 10.56 113.37 1.20 1.53 16 24 C -0.11 -2.84 9.70 22.27 0.22 -2.62 16 25 C -0.12 -3.72 9.70 22.27 0.22 -3.51 16 26 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 27 H 0.06 1.63 7.00 -2.39 -0.02 1.62 16 28 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.06 2.25 8.07 -2.39 -0.02 2.23 16 31 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 32 H 0.33 12.21 7.57 -89.70 -0.68 11.53 16 33 H 0.05 2.12 8.02 -2.39 -0.02 2.10 16 34 H 0.04 1.38 7.18 -2.39 -0.02 1.36 16 35 H 0.13 2.93 8.06 -2.92 -0.02 2.90 16 36 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 37 H 0.14 1.17 8.09 -2.38 -0.02 1.15 16 38 H 0.14 1.32 8.09 -2.39 -0.02 1.30 16 39 H 0.06 0.74 8.13 -2.38 -0.02 0.72 16 40 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 41 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.13 2.85 8.06 -2.91 -0.02 2.83 16 43 H 0.11 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -75.07 359.76 3.87 -71.20 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: 0.28 Total: 23.03 kcal Atomic # 6 Polarization: -33.87 SS G_CDS: 4.67 Total: -29.21 kcal Atomic # 7 Polarization: -88.40 SS G_CDS: -2.73 Total: -91.13 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.20 Total: -20.66 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.86 Total: 46.77 kcal Total: -75.07 3.87 -71.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154716.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.496 kcal (2) G-P(sol) polarization free energy of solvation -75.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds