Wall clock time and date at job start Tue Mar 31 2020 06:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47312 * 2 1 4 4 H 1.08996 * 109.47016 * 175.71976 * 3 2 1 5 5 C 1.50691 * 109.46968 * 55.71567 * 3 2 1 6 6 H 1.08002 * 120.00609 * 245.50575 * 5 3 2 7 7 C 1.37882 * 119.99986 * 65.51228 * 5 3 2 8 8 N 1.31511 * 119.99829 * 6.52199 * 7 5 3 9 9 Si 1.86798 * 120.00308 * 186.52505 * 7 5 3 10 10 H 1.48494 * 109.47507 * 179.97438 * 9 7 5 11 11 H 1.48510 * 109.47047 * 299.99863 * 9 7 5 12 12 H 1.48503 * 109.47328 * 59.99559 * 9 7 5 13 13 N 1.46898 * 109.46964 * 295.71989 * 3 2 1 14 14 C 1.46902 * 110.99828 * 279.35317 * 13 3 2 15 15 C 1.50707 * 109.46971 * 184.94591 * 14 13 3 16 16 C 1.38286 * 119.97376 * 269.72047 * 15 14 13 17 17 C 1.38237 * 120.11484 * 179.76712 * 16 15 14 18 18 C 1.38169 * 120.05366 * 0.51233 * 17 16 15 19 19 C 1.38710 * 119.94492 * 359.74550 * 18 17 16 20 20 O 1.35898 * 120.05958 * 180.02562 * 19 18 17 21 21 C 1.42901 * 116.99715 * 6.23542 * 20 19 18 22 22 C 1.54044 * 113.81524 * 252.65525 * 21 20 19 23 23 O 1.44178 * 85.51631 * 223.19597 * 22 21 20 24 24 C 1.44177 * 93.34082 * 24.19419 * 23 22 21 25 25 C 1.38127 * 119.96882 * 90.00139 * 15 14 13 26 26 H 1.09003 * 109.47293 * 184.83499 * 1 2 3 27 27 H 1.09008 * 109.47099 * 304.83648 * 1 2 3 28 28 H 1.08999 * 109.47019 * 64.83194 * 1 2 3 29 29 H 1.09000 * 109.46878 * 240.00421 * 2 1 3 30 30 H 1.08998 * 109.47150 * 120.00267 * 2 1 3 31 31 H 0.97004 * 120.00057 * 355.45127 * 8 7 5 32 32 H 1.00900 * 111.00192 * 155.39784 * 13 3 2 33 33 H 1.08997 * 109.47354 * 304.94100 * 14 13 3 34 34 H 1.08993 * 109.47356 * 64.94484 * 14 13 3 35 35 H 1.08005 * 119.94176 * 0.02562 * 16 15 14 36 36 H 1.08000 * 119.97808 * 180.25526 * 17 16 15 37 37 H 1.07997 * 120.02992 * 179.72648 * 18 17 16 38 38 H 1.08997 * 113.00213 * 24.64273 * 21 20 19 39 39 H 1.09001 * 113.86408 * 337.34268 * 22 21 20 40 40 H 1.08996 * 113.86320 * 109.04956 * 22 21 20 41 41 H 1.09004 * 113.86494 * 221.66050 * 24 23 22 42 42 H 1.09001 * 113.98562 * 89.96333 * 24 23 22 43 43 H 1.07997 * 120.02997 * 359.95241 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1273 1.4434 0.0767 5 6 1.4529 2.1828 1.1739 6 1 0.7700 3.0030 1.0084 7 6 1.7877 1.8132 2.4594 8 7 2.7146 0.9024 2.6614 9 14 0.9246 2.6061 3.9140 10 1 1.4614 2.0393 5.1772 11 1 1.1592 4.0723 3.8897 12 1 -0.5334 2.3367 3.8314 13 7 1.6366 2.1045 -1.2478 14 6 2.5410 1.7479 -2.3491 15 6 2.1707 2.5368 -3.5786 16 6 1.2550 2.0237 -4.4789 17 6 0.9096 2.7469 -5.6052 18 6 1.4868 3.9802 -5.8395 19 6 2.4095 4.4948 -4.9408 20 8 2.9782 5.7079 -5.1687 21 6 2.4811 6.4594 -6.2778 22 6 3.4492 6.5163 -7.4746 23 8 3.0977 7.9127 -7.5474 24 6 2.7188 7.9765 -6.1578 25 6 2.7506 3.7692 -3.8083 26 1 -0.3634 -1.0240 0.0866 27 1 -0.3634 0.5871 0.8436 28 1 -0.3633 0.4370 -0.9301 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.1159 0.4432 1.9071 32 1 1.5902 3.1052 -1.1276 33 1 3.5678 1.9784 -2.0652 34 1 2.4531 0.6824 -2.5610 35 1 0.8058 1.0580 -4.2996 36 1 0.1912 2.3459 -6.3048 37 1 1.2200 4.5430 -6.7218 38 1 1.4590 6.1940 -6.5482 39 1 4.4908 6.3371 -7.2081 40 1 3.1212 5.9335 -8.3353 41 1 1.8113 8.5519 -5.9741 42 1 3.5359 8.2432 -5.4875 43 1 3.4685 4.1679 -3.1068 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154845.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:03 Heat of formation + Delta-G solvation = -26.465761 kcal Electronic energy + Delta-G solvation = -22767.808535 eV Core-core repulsion = 19393.504932 eV Total energy + Delta-G solvation = -3374.303602 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.16038 -39.61110 -37.54372 -36.28285 -33.26936 -31.28711 -30.64759 -29.82859 -28.78901 -27.05582 -26.31299 -24.18502 -23.45226 -22.53035 -22.09494 -20.32372 -19.29255 -18.39003 -17.07362 -16.96654 -16.63256 -16.21550 -15.84149 -15.03959 -14.69777 -14.32593 -14.23762 -14.04369 -13.72700 -13.50128 -13.14170 -13.12209 -12.58807 -12.32205 -12.05676 -12.00222 -11.85238 -11.59711 -11.31321 -11.11291 -10.95437 -10.77650 -10.72090 -10.17323 -10.14750 -10.09230 -9.90423 -9.73661 -8.87119 -8.52711 -8.30745 -8.19588 -7.40790 -6.35564 -4.07209 1.33342 1.46707 2.92369 3.15882 3.42987 3.45274 3.63334 3.67010 3.86601 4.32448 4.51021 4.65401 4.78430 4.82349 4.91615 5.03259 5.09488 5.18506 5.34346 5.36978 5.40757 5.44043 5.55831 5.57803 5.64596 5.85106 6.04781 6.15512 6.26317 6.31727 6.40347 6.44735 6.59663 6.73086 6.80554 6.93909 7.04246 7.24303 7.30888 7.42811 7.55936 7.85060 8.08417 8.48711 8.56486 8.86549 9.63465 11.01247 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021075 B = 0.003139 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.245724 B = 8919.281991 C = 9763.835174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.107 4.107 3 C 0.203 3.797 4 H -0.008 1.008 5 C -0.592 4.592 6 H 0.054 0.946 7 C 0.023 3.977 8 N -0.912 5.912 9 Si 1.066 2.934 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.287 1.287 13 N -0.671 5.671 14 C 0.092 3.908 15 C -0.028 4.028 16 C -0.133 4.133 17 C -0.083 4.083 18 C -0.217 4.217 19 C 0.120 3.880 20 O -0.303 6.303 21 C 0.012 3.988 22 C 0.021 3.979 23 O -0.373 6.373 24 C 0.044 3.956 25 C -0.144 4.144 26 H 0.017 0.983 27 H 0.063 0.937 28 H 0.045 0.955 29 H 0.020 0.980 30 H 0.058 0.942 31 H 0.271 0.729 32 H 0.335 0.665 33 H 0.031 0.969 34 H 0.075 0.925 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.974 7.581 -18.992 20.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.146 4.146 3 C 0.095 3.905 4 H 0.009 0.991 5 C -0.630 4.630 6 H 0.072 0.928 7 C -0.182 4.182 8 N -0.548 5.548 9 Si 0.895 3.105 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.213 1.213 13 N -0.302 5.302 14 C -0.037 4.037 15 C -0.029 4.029 16 C -0.152 4.152 17 C -0.101 4.101 18 C -0.235 4.235 19 C 0.076 3.924 20 O -0.217 6.217 21 C -0.045 4.045 22 C -0.055 4.055 23 O -0.292 6.292 24 C -0.032 4.032 25 C -0.163 4.163 26 H 0.036 0.964 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.039 0.961 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.153 0.847 33 H 0.049 0.951 34 H 0.093 0.907 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.130 0.870 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.121 0.879 42 H 0.113 0.887 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.297 7.428 -17.572 19.121 hybrid contribution 0.625 0.264 -1.548 1.691 sum -0.672 7.692 -19.120 20.620 Atomic orbital electron populations 1.21452 0.96400 0.97844 1.02060 1.21518 0.96467 0.98253 0.98341 1.19293 0.93114 0.91676 0.86369 0.99056 1.21909 1.30823 1.18612 0.91680 0.92780 1.25707 0.95507 0.96791 1.00182 1.70801 1.23393 1.25091 1.35521 0.83579 0.75716 0.75507 0.75734 1.20883 1.21559 1.21347 1.60684 1.50022 1.13783 1.05747 1.20979 0.94793 0.98613 0.89289 1.19858 0.94237 0.93242 0.95535 1.21001 0.98731 1.00995 0.94436 1.20894 0.98368 0.93695 0.97146 1.21113 1.02333 0.98919 1.01176 1.18918 0.93678 0.85201 0.94616 1.86196 1.58917 1.28154 1.48443 1.26204 0.99913 0.92073 0.86313 1.24634 1.00161 0.82751 0.97992 1.89740 1.86276 1.27277 1.25878 1.24311 1.01739 0.93412 0.83783 1.20377 1.04048 0.95213 0.96657 0.96420 0.91820 0.93573 0.96124 0.92392 0.91748 0.84700 0.95144 0.90714 0.85671 0.85963 0.85968 0.87029 0.88870 0.88437 0.87920 0.88671 0.85407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.63 9.53 37.16 0.35 -2.27 16 2 C -0.11 -2.48 5.47 -26.73 -0.15 -2.63 16 3 C 0.20 4.94 1.92 -68.87 -0.13 4.81 16 4 H -0.01 -0.21 7.27 -51.93 -0.38 -0.59 16 5 C -0.59 -15.90 6.95 -34.44 -0.24 -16.14 16 6 H 0.05 1.47 7.75 -52.49 -0.41 1.06 16 7 C 0.02 0.63 5.27 -17.82 -0.09 0.54 16 8 N -0.91 -26.73 13.18 55.43 0.73 -26.00 16 9 Si 1.07 24.77 29.91 -169.99 -5.08 19.69 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 12 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 13 N -0.67 -13.89 5.82 -109.23 -0.64 -14.52 16 14 C 0.09 1.62 5.64 -4.97 -0.03 1.59 16 15 C -0.03 -0.43 5.34 -104.64 -0.56 -0.99 16 16 C -0.13 -1.83 9.70 -39.56 -0.38 -2.21 16 17 C -0.08 -0.98 10.04 -39.61 -0.40 -1.37 16 18 C -0.22 -2.50 9.01 -39.43 -0.36 -2.85 16 19 C 0.12 1.58 6.68 -39.21 -0.26 1.32 16 20 O -0.30 -3.67 10.17 -19.42 -0.20 -3.87 16 21 C 0.01 0.11 3.94 -25.65 -0.10 0.01 16 22 C 0.02 0.18 9.05 37.61 0.34 0.52 16 23 O -0.37 -3.70 12.45 -35.23 -0.44 -4.14 16 24 C 0.04 0.36 9.05 37.61 0.34 0.70 16 25 C -0.14 -2.12 9.64 -39.43 -0.38 -2.50 16 26 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 1.52 6.91 -51.92 -0.36 1.16 16 28 H 0.05 0.96 7.87 -51.93 -0.41 0.55 16 29 H 0.02 0.43 7.17 -51.93 -0.37 0.06 16 30 H 0.06 1.46 6.23 -51.93 -0.32 1.14 16 31 H 0.27 7.90 5.70 -40.82 -0.23 7.67 16 32 H 0.34 7.06 8.29 -39.29 -0.33 6.73 16 33 H 0.03 0.55 7.89 -51.93 -0.41 0.14 16 34 H 0.07 1.29 7.17 -51.93 -0.37 0.92 16 35 H 0.13 1.64 8.06 -52.48 -0.42 1.22 16 36 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.12 1.09 5.92 -52.49 -0.31 0.78 16 38 H 0.11 0.89 5.95 -51.93 -0.31 0.58 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.13 1.89 8.06 -52.49 -0.42 1.46 16 LS Contribution 349.07 15.07 5.26 5.26 Total: -1.00 -30.00 349.07 -8.79 -38.79 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -6.39 Total: 6.28 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -2.04 Total: -21.49 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.09 Total: -40.52 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: -0.64 Total: -8.01 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.08 Total: 19.69 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.00 -8.79 -38.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154845.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.324 kcal (2) G-P(sol) polarization free energy of solvation -29.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds