Wall clock time and date at job start Tue Mar 31 2020 06:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47312 * 2 1 4 4 H 1.08996 * 109.47016 * 175.71976 * 3 2 1 5 5 C 1.50691 * 109.46968 * 55.71567 * 3 2 1 6 6 H 1.08002 * 120.00609 * 245.50575 * 5 3 2 7 7 C 1.37882 * 119.99986 * 65.51228 * 5 3 2 8 8 N 1.31511 * 119.99829 * 6.52199 * 7 5 3 9 9 Si 1.86798 * 120.00308 * 186.52505 * 7 5 3 10 10 H 1.48494 * 109.47507 * 179.97438 * 9 7 5 11 11 H 1.48510 * 109.47047 * 299.99863 * 9 7 5 12 12 H 1.48503 * 109.47328 * 59.99559 * 9 7 5 13 13 N 1.46898 * 109.46964 * 295.71989 * 3 2 1 14 14 C 1.46902 * 110.99828 * 279.35317 * 13 3 2 15 15 C 1.50707 * 109.46971 * 184.94591 * 14 13 3 16 16 C 1.38286 * 119.97376 * 269.72047 * 15 14 13 17 17 C 1.38237 * 120.11484 * 179.76712 * 16 15 14 18 18 C 1.38169 * 120.05366 * 0.51233 * 17 16 15 19 19 C 1.38710 * 119.94492 * 359.74550 * 18 17 16 20 20 O 1.35898 * 120.05958 * 180.02562 * 19 18 17 21 21 C 1.42901 * 116.99715 * 6.23542 * 20 19 18 22 22 C 1.54044 * 113.81524 * 252.65525 * 21 20 19 23 23 O 1.44178 * 85.51631 * 223.19597 * 22 21 20 24 24 C 1.44177 * 93.34082 * 24.19419 * 23 22 21 25 25 C 1.38127 * 119.96882 * 90.00139 * 15 14 13 26 26 H 1.09003 * 109.47293 * 184.83499 * 1 2 3 27 27 H 1.09008 * 109.47099 * 304.83648 * 1 2 3 28 28 H 1.08999 * 109.47019 * 64.83194 * 1 2 3 29 29 H 1.09000 * 109.46878 * 240.00421 * 2 1 3 30 30 H 1.08998 * 109.47150 * 120.00267 * 2 1 3 31 31 H 0.97004 * 120.00057 * 355.45127 * 8 7 5 32 32 H 1.00900 * 111.00192 * 155.39784 * 13 3 2 33 33 H 1.08997 * 109.47354 * 304.94100 * 14 13 3 34 34 H 1.08993 * 109.47356 * 64.94484 * 14 13 3 35 35 H 1.08005 * 119.94176 * 0.02562 * 16 15 14 36 36 H 1.08000 * 119.97808 * 180.25526 * 17 16 15 37 37 H 1.07997 * 120.02992 * 179.72648 * 18 17 16 38 38 H 1.08997 * 113.00213 * 24.64273 * 21 20 19 39 39 H 1.09001 * 113.86408 * 337.34268 * 22 21 20 40 40 H 1.08996 * 113.86320 * 109.04956 * 22 21 20 41 41 H 1.09004 * 113.86494 * 221.66050 * 24 23 22 42 42 H 1.09001 * 113.98562 * 89.96333 * 24 23 22 43 43 H 1.07997 * 120.02997 * 359.95241 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1273 1.4434 0.0767 5 6 1.4529 2.1828 1.1739 6 1 0.7700 3.0030 1.0084 7 6 1.7877 1.8132 2.4594 8 7 2.7146 0.9024 2.6614 9 14 0.9246 2.6061 3.9140 10 1 1.4614 2.0393 5.1772 11 1 1.1592 4.0723 3.8897 12 1 -0.5334 2.3367 3.8314 13 7 1.6366 2.1045 -1.2478 14 6 2.5410 1.7479 -2.3491 15 6 2.1707 2.5368 -3.5786 16 6 1.2550 2.0237 -4.4789 17 6 0.9096 2.7469 -5.6052 18 6 1.4868 3.9802 -5.8395 19 6 2.4095 4.4948 -4.9408 20 8 2.9782 5.7079 -5.1687 21 6 2.4811 6.4594 -6.2778 22 6 3.4492 6.5163 -7.4746 23 8 3.0977 7.9127 -7.5474 24 6 2.7188 7.9765 -6.1578 25 6 2.7506 3.7692 -3.8083 26 1 -0.3634 -1.0240 0.0866 27 1 -0.3634 0.5871 0.8436 28 1 -0.3633 0.4370 -0.9301 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.1159 0.4432 1.9071 32 1 1.5902 3.1052 -1.1276 33 1 3.5678 1.9784 -2.0652 34 1 2.4531 0.6824 -2.5610 35 1 0.8058 1.0580 -4.2996 36 1 0.1912 2.3459 -6.3048 37 1 1.2200 4.5430 -6.7218 38 1 1.4590 6.1940 -6.5482 39 1 4.4908 6.3371 -7.2081 40 1 3.1212 5.9335 -8.3353 41 1 1.8113 8.5519 -5.9741 42 1 3.5359 8.2432 -5.4875 43 1 3.4685 4.1679 -3.1068 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154845.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:03 Heat of formation + Delta-G solvation = -45.386472 kcal Electronic energy + Delta-G solvation = -22768.628998 eV Core-core repulsion = 19393.504932 eV Total energy + Delta-G solvation = -3375.124066 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.92280 -40.54596 -38.78392 -37.80251 -34.92857 -33.01899 -31.75395 -31.15597 -29.58906 -28.06220 -27.65194 -25.88544 -25.24804 -23.52445 -23.10200 -21.32801 -21.04365 -19.46907 -18.78177 -17.83677 -17.40228 -17.08789 -16.85142 -16.25497 -16.04328 -15.83333 -15.60707 -15.45494 -15.30828 -14.85058 -14.37895 -13.99592 -13.88766 -13.70865 -13.50965 -13.25238 -13.07885 -12.90850 -12.64228 -12.59860 -12.38665 -11.98310 -11.95236 -11.94904 -11.72417 -11.65181 -11.52062 -10.83039 -10.61770 -10.39010 -9.89695 -9.20340 -9.14978 -8.56038 -6.28031 0.29616 0.45624 1.54577 1.61704 1.80449 2.08196 2.51998 2.57624 2.72779 3.10239 3.23203 3.60754 3.66949 3.83457 3.86870 4.04949 4.11480 4.24513 4.30652 4.38613 4.39428 4.46605 4.48337 4.55289 4.62773 4.70585 4.74998 4.78589 4.86600 4.93917 5.03432 5.04365 5.20630 5.27785 5.38311 5.45044 5.50982 5.68188 5.71736 5.77087 5.89225 6.09573 6.38929 6.47894 6.59957 6.77945 7.50863 8.81129 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021075 B = 0.003139 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.245724 B = 8919.281991 C = 9763.835174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.102 4.102 3 C 0.207 3.793 4 H -0.043 1.043 5 C -0.596 4.596 6 H 0.049 0.951 7 C -0.024 4.024 8 N -0.938 5.938 9 Si 1.109 2.891 10 H -0.287 1.287 11 H -0.274 1.274 12 H -0.271 1.271 13 N -0.664 5.664 14 C 0.099 3.901 15 C -0.044 4.044 16 C -0.143 4.143 17 C -0.075 4.075 18 C -0.207 4.207 19 C 0.117 3.883 20 O -0.317 6.317 21 C 0.005 3.995 22 C 0.022 3.978 23 O -0.391 6.391 24 C 0.043 3.957 25 C -0.164 4.164 26 H 0.040 0.960 27 H 0.039 0.961 28 H 0.055 0.945 29 H 0.039 0.961 30 H 0.032 0.968 31 H 0.260 0.740 32 H 0.331 0.669 33 H 0.017 0.983 34 H 0.077 0.923 35 H 0.130 0.870 36 H 0.157 0.843 37 H 0.155 0.845 38 H 0.128 0.872 39 H 0.091 0.909 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.094 0.906 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.822 8.281 -21.127 22.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.141 4.141 3 C 0.098 3.902 4 H -0.025 1.025 5 C -0.634 4.634 6 H 0.067 0.933 7 C -0.223 4.223 8 N -0.576 5.576 9 Si 0.932 3.068 10 H -0.213 1.213 11 H -0.199 1.199 12 H -0.196 1.196 13 N -0.294 5.294 14 C -0.030 4.030 15 C -0.044 4.044 16 C -0.162 4.162 17 C -0.093 4.093 18 C -0.226 4.226 19 C 0.073 3.927 20 O -0.232 6.232 21 C -0.051 4.051 22 C -0.054 4.054 23 O -0.310 6.310 24 C -0.034 4.034 25 C -0.183 4.183 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.148 0.852 33 H 0.035 0.965 34 H 0.096 0.904 35 H 0.148 0.852 36 H 0.174 0.826 37 H 0.172 0.828 38 H 0.146 0.854 39 H 0.109 0.891 40 H 0.137 0.863 41 H 0.140 0.860 42 H 0.112 0.888 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.146 8.138 -19.741 21.583 hybrid contribution 1.241 0.111 -1.023 1.612 sum -1.905 8.249 -20.764 22.424 Atomic orbital electron populations 1.21330 0.94953 0.98969 1.01435 1.21411 0.97604 0.97131 0.97932 1.19132 0.90888 0.92690 0.87474 1.02527 1.22182 1.30147 1.18343 0.92723 0.93253 1.27011 0.95416 0.96711 1.03191 1.70907 1.24993 1.26568 1.35086 0.83024 0.75567 0.75527 0.72698 1.21299 1.19924 1.19617 1.60632 1.50666 1.13198 1.04941 1.20910 0.93497 0.99226 0.89402 1.19602 0.96023 0.93604 0.95213 1.21141 0.98472 1.01566 0.94972 1.21262 0.98141 0.93286 0.96590 1.21474 1.00791 0.98854 1.01433 1.18967 0.93893 0.85556 0.94330 1.86190 1.59301 1.27901 1.49766 1.26485 1.00855 0.92056 0.85721 1.24745 0.99996 0.82254 0.98411 1.89727 1.86457 1.28187 1.26649 1.24448 1.02561 0.93227 0.83125 1.20339 1.04606 0.95678 0.97693 0.94088 0.94236 0.92556 0.94279 0.94977 0.92960 0.85176 0.96468 0.90440 0.85187 0.82581 0.82781 0.85446 0.89130 0.86316 0.86047 0.88816 0.86836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.69 9.53 71.98 0.69 -4.01 16 2 C -0.10 -4.78 5.47 30.59 0.17 -4.61 16 3 C 0.21 10.34 1.92 44.17 0.08 10.42 16 4 H -0.04 -2.39 7.27 -2.39 -0.02 -2.41 16 5 C -0.60 -32.61 6.95 25.60 0.18 -32.43 16 6 H 0.05 2.70 7.75 -2.91 -0.02 2.68 16 7 C -0.02 -1.37 5.27 84.66 0.45 -0.93 16 8 N -0.94 -56.50 13.18 21.45 0.28 -56.22 16 9 Si 1.11 49.98 29.91 68.60 2.05 52.03 16 10 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 11 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 12 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 13 N -0.66 -27.95 5.82 -499.48 -2.91 -30.86 16 14 C 0.10 3.53 5.64 85.56 0.48 4.01 16 15 C -0.04 -1.33 5.34 -19.88 -0.11 -1.44 16 16 C -0.14 -3.66 9.70 22.28 0.22 -3.45 16 17 C -0.08 -1.50 10.04 22.25 0.22 -1.28 16 18 C -0.21 -4.08 9.01 22.37 0.20 -3.87 16 19 C 0.12 2.91 6.68 22.51 0.15 3.06 16 20 O -0.32 -7.28 10.17 -92.41 -0.94 -8.21 16 21 C 0.01 0.08 3.94 31.30 0.12 0.20 16 22 C 0.02 0.32 9.05 72.28 0.65 0.97 16 23 O -0.39 -7.00 12.45 -148.98 -1.86 -8.85 16 24 C 0.04 0.62 9.05 72.27 0.65 1.28 16 25 C -0.16 -4.86 9.64 22.37 0.22 -4.65 16 26 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.04 1.86 6.91 -2.38 -0.02 1.84 16 28 H 0.06 2.27 7.87 -2.39 -0.02 2.25 16 29 H 0.04 1.65 7.17 -2.39 -0.02 1.63 16 30 H 0.03 1.66 6.23 -2.39 -0.01 1.64 16 31 H 0.26 15.81 5.70 -92.71 -0.53 15.28 16 32 H 0.33 14.29 8.29 -89.69 -0.74 13.55 16 33 H 0.02 0.66 7.89 -2.39 -0.02 0.64 16 34 H 0.08 2.70 7.17 -2.39 -0.02 2.68 16 35 H 0.13 3.15 8.06 -2.91 -0.02 3.13 16 36 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 37 H 0.15 2.01 5.92 -2.91 -0.02 2.00 16 38 H 0.13 1.57 5.95 -2.39 -0.01 1.55 16 39 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.12 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.11 3.56 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -65.66 349.07 1.51 -64.15 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: 0.51 Total: 24.67 kcal Atomic # 6 Polarization: -41.08 SS G_CDS: 4.38 Total: -36.70 kcal Atomic # 7 Polarization: -84.45 SS G_CDS: -2.63 Total: -87.08 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -2.79 Total: -17.07 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 2.05 Total: 52.03 kcal Total: -65.66 1.51 -64.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154845.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.759 kcal (2) G-P(sol) polarization free energy of solvation -65.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds